Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 N 1.46504 * 109.47124 * 119.99755 * 2 1 3 5 5 C 1.34773 * 120.00133 * 275.00081 * 4 2 1 6 6 O 1.21282 * 120.00097 * 0.02562 * 5 4 2 7 7 C 1.50707 * 120.00003 * 179.97438 * 5 4 2 8 8 C 1.50695 * 109.46927 * 180.02562 * 7 5 4 9 9 C 1.37639 * 120.13049 * 264.99732 * 8 7 5 10 10 C 1.38608 * 120.25012 * 179.97438 * 9 8 7 11 11 C 1.38659 * 120.50249 * 0.02934 * 10 9 8 12 12 C 1.37595 * 120.24703 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.12548 * 84.72749 * 8 7 5 14 14 C 1.41395 * 120.24884 * 359.97438 * 13 8 7 15 15 H 1.08001 * 119.99468 * 333.90084 * 14 13 8 16 16 C 1.39946 * 120.00176 * 153.89828 * 14 13 8 17 17 N 1.30818 * 119.99934 * 343.70724 * 16 14 13 18 18 Si 1.86803 * 119.99948 * 163.71533 * 16 14 13 19 19 H 1.48501 * 109.47069 * 89.99836 * 18 16 14 20 20 H 1.48494 * 109.46865 * 209.99926 * 18 16 14 21 21 H 1.48507 * 109.46984 * 330.00093 * 18 16 14 22 22 C 1.50699 * 109.47398 * 239.99946 * 2 1 3 23 23 N 1.31072 * 126.66173 * 285.02473 * 22 2 1 24 24 N 1.28839 * 107.99179 * 179.97438 * 23 22 2 25 25 N 1.28746 * 109.39560 * 359.97438 * 24 23 22 26 26 N 1.29014 * 108.80864 * 359.74581 * 25 24 23 27 27 C 1.46498 * 126.43807 * 180.24234 * 26 25 24 28 28 C 1.53003 * 117.49960 * 8.93140 * 27 26 25 29 29 C 1.53006 * 117.50076 * 300.27125 * 27 26 25 30 30 H 1.08999 * 109.47648 * 299.99675 * 1 2 3 31 31 H 1.09005 * 109.47435 * 60.00231 * 1 2 3 32 32 H 1.09007 * 109.47084 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99981 * 95.00318 * 4 2 1 34 34 H 1.09002 * 109.46787 * 299.99854 * 7 5 4 35 35 H 1.08995 * 109.47061 * 60.00126 * 7 5 4 36 36 H 1.08002 * 119.87470 * 0.02562 * 9 8 7 37 37 H 1.08001 * 119.74992 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.87523 * 179.97438 * 11 10 9 39 39 H 1.08003 * 120.12902 * 179.97438 * 12 11 10 40 40 H 0.97006 * 119.99989 * 179.97438 * 17 16 14 41 41 H 1.09007 * 115.55354 * 154.59887 * 27 26 25 42 42 H 1.09005 * 117.49558 * 359.97438 * 28 27 26 43 43 H 1.08997 * 117.49850 * 145.01981 * 28 27 26 44 44 H 1.08998 * 117.49434 * 214.97591 * 29 27 26 45 45 H 1.08992 * 117.49704 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6488 -0.7288 3.5878 8 6 2.6990 0.2395 4.7415 9 6 3.8714 0.8943 5.0434 10 6 3.9202 1.7858 6.1036 11 6 2.7916 2.0281 6.8719 12 6 1.6092 1.3839 6.5890 13 6 1.5460 0.4818 5.5106 14 6 0.3344 -0.1803 5.2061 15 1 0.1445 -0.5228 4.1996 16 6 -0.6186 -0.3919 6.2088 17 7 -0.2806 -0.2768 7.4673 18 14 -2.3735 -0.8388 5.7501 19 1 -2.5013 -2.3157 5.6623 20 1 -3.3028 -0.3222 6.7867 21 1 -2.7112 -0.2338 4.4366 22 6 2.0323 -0.7104 -1.2304 23 7 2.0363 -2.0042 -1.4404 24 7 2.5435 -2.2168 -2.6055 25 7 2.8627 -1.0920 -3.1445 26 7 2.5579 -0.1390 -2.3300 27 6 2.7513 1.2952 -2.5574 28 6 3.1772 1.7372 -3.9589 29 6 4.1798 1.7852 -2.8032 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1527 34 1 1.9758 -1.5505 3.8326 35 1 3.6479 -1.1213 3.3987 36 1 4.7564 0.7134 4.4514 37 1 4.8445 2.2949 6.3336 38 1 2.8412 2.7245 7.6959 39 1 0.7314 1.5738 7.1890 40 1 -0.9413 -0.4231 8.1623 41 1 2.0816 1.9536 -2.0039 42 1 3.3139 0.9607 -4.7117 43 1 2.7881 2.6863 -4.3273 44 1 4.4497 2.7660 -2.4117 45 1 4.9756 1.0406 -2.7952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791224246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 126.096969 kcal Electronic energy + Delta-G solvation = -29201.676670 eV Core-core repulsion = 25222.525052 eV Total energy + Delta-G solvation = -3979.151618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.44855 -39.50971 -38.33061 -37.48578 -35.75179 -33.97397 -33.62165 -32.48087 -31.68044 -30.10679 -29.43730 -26.80129 -25.66860 -25.13887 -24.74429 -23.16552 -22.45397 -21.41696 -20.93441 -20.38521 -19.44432 -18.20611 -17.35606 -17.18917 -16.80103 -16.23879 -15.73279 -15.44962 -14.75550 -14.64973 -14.49319 -13.95966 -13.79504 -13.56850 -13.44492 -13.19263 -12.85703 -12.64519 -12.56719 -12.41469 -12.24139 -12.22466 -11.81165 -11.72440 -11.57102 -11.35796 -11.21215 -11.15553 -11.03697 -10.97636 -10.72667 -10.70336 -10.40063 -10.23742 -9.49309 -9.40311 -9.29822 -9.15112 -9.01132 -7.32011 -7.29795 -6.73534 -4.34465 0.87693 1.50620 1.98338 2.77751 2.90973 2.96312 3.07505 3.11820 3.16828 3.27088 3.38838 3.56071 3.73686 3.93990 4.01553 4.12454 4.30482 4.66196 4.76341 4.93391 4.96470 5.04618 5.13376 5.28153 5.36103 5.41871 5.46517 5.54809 5.71758 5.79056 5.87695 6.00137 6.10591 6.12838 6.27618 6.42111 6.50453 6.53967 6.79371 7.08824 7.29249 7.41914 7.62647 7.76295 7.92639 8.06609 8.12854 8.31255 8.36003 8.63810 8.70077 8.91589 9.01278 10.20526 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003116 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.960394 B = 8983.286793 C =10247.820413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.108 0.892 4 N -0.735 5.735 5 C 0.521 3.479 6 O -0.517 6.517 7 C -0.069 4.069 8 C -0.182 4.182 9 C -0.081 4.081 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.130 3.870 14 C -0.456 4.456 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.901 3.099 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.261 1.261 22 C 0.187 3.813 23 N -0.293 5.293 24 N -0.074 5.074 25 N -0.097 5.097 26 N -0.273 5.273 27 C 0.042 3.958 28 C -0.152 4.152 29 C -0.161 4.161 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.406 0.594 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 41 H 0.164 0.836 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 2.891 -17.200 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.124 3.876 3 H 0.126 0.874 4 N -0.392 5.392 5 C 0.310 3.690 6 O -0.390 6.390 7 C -0.109 4.109 8 C -0.184 4.184 9 C -0.099 4.099 10 C -0.260 4.260 11 C -0.125 4.125 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.486 4.486 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.420 5.420 18 Si 0.726 3.274 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.092 4.092 23 N -0.142 5.142 24 N -0.067 5.067 25 N -0.082 5.082 26 N -0.074 5.074 27 C -0.061 4.061 28 C -0.190 4.190 29 C -0.199 4.199 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.181 0.819 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.466 2.536 -17.669 18.184 hybrid contribution -0.849 0.150 0.229 0.892 sum 2.617 2.685 -17.441 17.839 Atomic orbital electron populations 1.22230 0.92316 1.03930 1.03598 1.19096 0.95080 0.95441 0.77990 0.87381 1.46186 1.70038 1.14534 1.08397 1.21376 0.76447 0.87644 0.83575 1.90680 1.47996 1.16115 1.84245 1.20264 1.01139 0.99000 0.90475 1.19020 0.94218 1.04310 1.00864 1.20293 0.95838 0.96946 0.96810 1.20295 0.97622 1.06503 1.01533 1.20678 0.94135 0.99403 0.98300 1.21300 0.96970 0.98606 1.00987 1.17330 0.91023 0.88955 0.89938 1.19466 1.00027 1.33025 0.96053 0.90718 1.25876 1.00503 0.93191 0.94450 1.69817 1.35594 1.36164 1.00418 0.86423 0.81956 0.79367 0.79691 1.19468 1.20131 1.18511 1.26251 0.99478 0.90376 0.93097 1.74996 1.17786 1.11262 1.10175 1.78642 1.11435 1.15156 1.01491 1.78811 1.19048 0.92126 1.18211 1.47843 1.39312 1.08738 1.11487 1.22483 1.03000 0.75197 1.05402 1.23469 1.00973 1.04209 0.90361 1.23568 0.91078 1.04122 1.01128 0.89385 0.91883 0.91018 0.75842 0.88195 0.90435 0.89838 0.89724 0.89618 0.86531 0.90953 0.81921 0.86534 0.86176 0.85935 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.47 37.15 0.35 -1.56 16 2 C 0.23 2.86 2.94 -69.08 -0.20 2.66 16 3 H 0.11 1.28 6.67 -51.93 -0.35 0.93 16 4 N -0.73 -10.37 5.07 -54.93 -0.28 -10.65 16 5 C 0.52 9.39 7.40 -10.98 -0.08 9.31 16 6 O -0.52 -11.13 15.70 5.56 0.09 -11.04 16 7 C -0.07 -1.30 5.18 -29.03 -0.15 -1.45 16 8 C -0.18 -4.24 4.43 -103.91 -0.46 -4.70 16 9 C -0.08 -1.81 9.66 -39.66 -0.38 -2.19 16 10 C -0.24 -5.47 10.05 -39.29 -0.39 -5.86 16 11 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.16 -4.17 8.69 -38.87 -0.34 -4.51 16 13 C 0.13 3.38 5.56 -106.82 -0.59 2.78 16 14 C -0.46 -11.64 8.14 -37.74 -0.31 -11.95 16 15 H 0.07 1.84 6.67 -52.49 -0.35 1.49 16 16 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 17 N -0.79 -20.20 10.96 55.55 0.61 -19.59 16 18 Si 0.90 18.49 29.59 -169.99 -5.03 13.46 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C 0.19 2.29 6.91 -155.43 -1.07 1.22 16 23 N -0.29 -4.19 12.09 32.70 0.40 -3.80 16 24 N -0.07 -1.09 13.43 60.35 0.81 -0.28 16 25 N -0.10 -1.24 12.69 60.35 0.77 -0.48 16 26 N -0.27 -2.97 3.67 -51.80 -0.19 -3.16 16 27 C 0.04 0.30 6.43 -67.93 -0.44 -0.14 16 28 C -0.15 -0.76 10.16 -26.69 -0.27 -1.03 16 29 C -0.16 -0.90 10.46 -26.69 -0.28 -1.18 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.41 5.20 8.38 -40.82 -0.34 4.86 16 34 H 0.10 1.86 7.08 -51.93 -0.37 1.50 16 35 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 36 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 3.14 6.20 -52.48 -0.33 2.82 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.16 0.82 7.61 -51.93 -0.39 0.43 16 42 H 0.12 0.71 7.85 -51.93 -0.41 0.30 16 43 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -31.70 385.01 -8.03 -39.73 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.89 Total: 9.73 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -5.11 Total: -19.73 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 2.11 Total: -37.95 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.70 -8.03 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791224246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.827 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds