Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47907 * 2 1 4 4 N 1.46499 * 109.47325 * 239.99293 * 2 1 3 5 5 C 1.34774 * 120.00005 * 85.00669 * 4 2 1 6 6 O 1.21278 * 119.99526 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00256 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47556 * 179.97438 * 7 5 4 9 9 C 1.37630 * 120.12796 * 265.00188 * 8 7 5 10 10 C 1.38619 * 120.24694 * 180.29070 * 9 8 7 11 11 C 1.38655 * 120.49866 * 359.44683 * 10 9 8 12 12 C 1.37604 * 120.25111 * 0.55480 * 11 10 9 13 13 C 1.40697 * 120.12236 * 85.01918 * 8 7 5 14 14 C 1.41390 * 120.25030 * 359.96070 * 13 8 7 15 15 H 1.08004 * 119.99865 * 334.08548 * 14 13 8 16 16 C 1.39940 * 120.00399 * 154.08926 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.61139 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.62242 * 16 14 13 19 19 H 1.48494 * 109.47012 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47407 * 119.99663 * 18 16 14 21 21 H 1.48508 * 109.46756 * 239.99409 * 18 16 14 22 22 C 1.50708 * 109.46531 * 119.99732 * 2 1 3 23 23 N 1.31073 * 126.65724 * 74.68367 * 22 2 1 24 24 N 1.28851 * 107.98624 * 179.89352 * 23 22 2 25 25 N 1.28732 * 109.39553 * 0.37918 * 24 23 22 26 26 N 1.29016 * 108.81377 * 359.76282 * 25 24 23 27 27 C 1.46501 * 126.44305 * 179.97438 * 26 25 24 28 28 C 1.53001 * 117.49549 * 8.77873 * 27 26 25 29 29 C 1.52992 * 117.50158 * 300.11909 * 27 26 25 30 30 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47260 * 300.00720 * 1 2 3 32 32 H 1.09007 * 109.46615 * 60.00381 * 1 2 3 33 33 H 0.97004 * 120.00509 * 265.00730 * 4 2 1 34 34 H 1.09003 * 109.47324 * 59.99832 * 7 5 4 35 35 H 1.09000 * 109.47440 * 299.99911 * 7 5 4 36 36 H 1.07995 * 119.88141 * 0.02562 * 9 8 7 37 37 H 1.07999 * 119.74930 * 179.69896 * 10 9 8 38 38 H 1.08004 * 119.87487 * 180.29445 * 11 10 9 39 39 H 1.07992 * 120.12974 * 179.74704 * 12 11 10 40 40 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 41 41 H 1.09001 * 115.54966 * 154.43879 * 27 26 25 42 42 H 1.09003 * 117.50141 * 0.02562 * 28 27 26 43 43 H 1.08998 * 117.49579 * 145.01536 * 28 27 26 44 44 H 1.09002 * 117.49997 * 214.97758 * 29 27 26 45 45 H 1.09006 * 117.49661 * 359.97033 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3571 6 8 1.8584 1.1581 -2.4117 7 6 2.6491 -0.7291 -3.5876 8 6 2.6995 0.2390 -4.7414 9 6 1.6441 0.3210 -5.6210 10 6 1.6904 1.2063 -6.6866 11 6 2.7928 2.0264 -6.8728 12 6 3.8594 1.9614 -6.0059 13 6 3.8258 1.0621 -4.9237 14 6 4.9158 0.9870 -4.0263 15 1 4.7581 0.6501 -3.0123 16 6 6.1988 1.3491 -4.4517 17 7 6.4611 1.4462 -5.7297 18 14 7.5371 1.6936 -3.1948 19 1 6.9885 1.5162 -1.8264 20 1 8.6655 0.7509 -3.4022 21 1 8.0211 3.0882 -3.3568 22 6 2.0322 -0.7104 1.2306 23 7 2.0311 -2.0039 1.4427 24 7 2.5427 -2.2167 2.6060 25 7 2.8627 -1.0921 3.1446 26 7 2.5636 -0.1395 2.3276 27 6 2.7639 1.2943 2.5518 28 6 3.5713 1.7107 3.7830 29 6 2.0563 1.9274 3.7515 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6320 -1.1525 34 1 1.9761 -1.5509 -3.8324 35 1 3.6481 -1.1218 -3.3984 36 1 0.7784 -0.3098 -5.4829 37 1 0.8598 1.2605 -7.3747 38 1 2.8162 2.7158 -7.7038 39 1 4.7188 2.5981 -6.1551 40 1 7.3503 1.6975 -6.0247 41 1 2.8695 1.9006 1.6522 42 1 3.9537 0.9178 4.4259 43 1 4.2075 2.5911 3.6934 44 1 1.6965 2.9504 3.6412 45 1 1.4412 1.2772 4.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791224247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = 125.590532 kcal Electronic energy + Delta-G solvation = -29308.851249 eV Core-core repulsion = 25329.677670 eV Total energy + Delta-G solvation = -3979.173579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.41638 -39.51716 -38.28960 -37.49773 -35.75643 -33.93795 -33.64106 -32.47120 -31.68296 -30.12391 -29.45552 -26.81801 -25.62612 -25.14199 -24.76120 -23.16671 -22.42506 -21.36484 -20.94156 -20.39132 -19.44894 -18.24019 -17.23806 -17.20038 -16.84754 -16.27816 -15.65605 -15.40059 -14.87271 -14.66253 -14.48176 -13.92818 -13.79831 -13.58838 -13.43775 -13.19478 -12.84691 -12.62920 -12.58909 -12.44588 -12.25387 -12.19512 -11.82631 -11.74148 -11.59298 -11.32068 -11.20209 -11.18289 -11.05825 -11.01709 -10.71463 -10.67386 -10.41635 -10.21781 -9.50116 -9.41091 -9.30439 -9.18685 -9.02037 -7.32720 -7.31190 -6.76022 -4.36696 0.91611 1.54297 2.00907 2.74828 2.92739 2.98167 3.03955 3.07568 3.16496 3.24304 3.39143 3.55130 3.77943 3.90270 4.05687 4.19423 4.33113 4.63908 4.76829 4.90546 5.00254 5.07236 5.14753 5.31770 5.33826 5.45486 5.49766 5.52099 5.66860 5.78432 5.89596 5.99079 6.02640 6.10439 6.28064 6.41281 6.50226 6.53172 6.78611 7.06586 7.28123 7.40677 7.61373 7.75630 7.91770 8.04912 8.11932 8.29721 8.38837 8.62300 8.69207 8.89542 8.99699 10.18263 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.003529 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.099998 B = 7932.256380 C = 9359.999427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.232 3.768 3 H 0.109 0.891 4 N -0.735 5.735 5 C 0.522 3.478 6 O -0.518 6.518 7 C -0.070 4.070 8 C -0.181 4.181 9 C -0.080 4.080 10 C -0.239 4.239 11 C -0.106 4.106 12 C -0.159 4.159 13 C 0.129 3.871 14 C -0.457 4.457 15 H 0.073 0.927 16 C 0.078 3.922 17 N -0.794 5.794 18 Si 0.901 3.099 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.272 1.272 22 C 0.186 3.814 23 N -0.294 5.294 24 N -0.074 5.074 25 N -0.096 5.096 26 N -0.272 5.272 27 C 0.042 3.958 28 C -0.152 4.152 29 C -0.161 4.161 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.407 0.593 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.165 0.835 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 0.607 15.086 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.123 3.877 3 H 0.126 0.874 4 N -0.392 5.392 5 C 0.310 3.690 6 O -0.391 6.391 7 C -0.109 4.109 8 C -0.183 4.183 9 C -0.098 4.098 10 C -0.258 4.258 11 C -0.125 4.125 12 C -0.179 4.179 13 C 0.127 3.873 14 C -0.487 4.487 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.419 5.419 18 Si 0.726 3.274 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.092 4.092 23 N -0.144 5.144 24 N -0.067 5.067 25 N -0.081 5.081 26 N -0.072 5.072 27 C -0.061 4.061 28 C -0.190 4.190 29 C -0.199 4.199 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.242 0.758 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.182 0.818 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.079 0.327 15.633 16.777 hybrid contribution 0.767 0.547 0.149 0.954 sum -5.312 0.874 15.782 16.675 Atomic orbital electron populations 1.22184 0.92392 1.03620 1.03443 1.19100 0.94974 0.95572 0.78009 0.87360 1.46201 1.70047 1.14545 1.08418 1.21371 0.76220 0.87647 0.83786 1.90678 1.48030 1.15852 1.84526 1.20268 1.02276 0.97616 0.90757 1.19023 0.98338 1.02516 0.98429 1.20307 0.96099 0.98089 0.95345 1.20314 0.99429 1.04372 1.01719 1.20684 0.94667 0.98675 0.98476 1.21289 0.97923 1.00997 0.97647 1.17330 0.90685 0.88008 0.91279 1.19475 0.91520 1.39367 0.98309 0.90895 1.25856 0.99942 0.92708 0.95462 1.69822 1.22427 1.34503 1.15170 0.86383 0.80404 0.78938 0.81717 1.18761 1.19970 1.19673 1.26208 0.99314 0.90418 0.93303 1.74975 1.17889 1.11222 1.10271 1.78628 1.11399 1.15168 1.01547 1.78809 1.18966 0.92096 1.18246 1.47828 1.38966 1.08794 1.11636 1.22514 1.10861 0.74960 0.97785 1.23469 0.94681 1.04278 0.96585 1.23560 0.96023 1.02894 0.97413 0.91159 0.91758 0.89790 0.75828 0.90179 0.88388 0.89665 0.89646 0.89597 0.86575 0.90993 0.81826 0.86500 0.86108 0.85990 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.47 37.16 0.35 -1.33 16 2 C 0.23 2.87 2.96 -69.08 -0.20 2.66 16 3 H 0.11 1.34 6.42 -51.93 -0.33 1.01 16 4 N -0.74 -10.40 5.07 -54.93 -0.28 -10.68 16 5 C 0.52 9.40 7.43 -10.99 -0.08 9.32 16 6 O -0.52 -11.13 15.70 5.56 0.09 -11.04 16 7 C -0.07 -1.31 5.18 -29.04 -0.15 -1.46 16 8 C -0.18 -4.21 4.43 -103.92 -0.46 -4.67 16 9 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 10 C -0.24 -5.43 10.05 -39.29 -0.39 -5.82 16 11 C -0.11 -2.54 10.02 -39.66 -0.40 -2.94 16 12 C -0.16 -4.16 8.68 -38.87 -0.34 -4.50 16 13 C 0.13 3.36 5.56 -106.83 -0.59 2.77 16 14 C -0.46 -11.71 8.14 -37.75 -0.31 -12.02 16 15 H 0.07 1.82 6.68 -52.48 -0.35 1.47 16 16 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 17 N -0.79 -20.18 10.97 55.55 0.61 -19.57 16 18 Si 0.90 18.57 29.59 -169.99 -5.03 13.54 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C 0.19 2.37 6.91 -155.43 -1.07 1.29 16 23 N -0.29 -4.27 12.10 32.70 0.40 -3.88 16 24 N -0.07 -1.13 13.43 60.35 0.81 -0.32 16 25 N -0.10 -1.30 12.69 60.35 0.77 -0.53 16 26 N -0.27 -3.16 3.67 -51.81 -0.19 -3.35 16 27 C 0.04 0.34 6.59 -67.93 -0.45 -0.11 16 28 C -0.15 -0.94 10.16 -26.69 -0.27 -1.21 16 29 C -0.16 -0.89 10.46 -26.70 -0.28 -1.17 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.41 5.22 8.38 -40.82 -0.34 4.87 16 34 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.10 1.85 7.06 -51.93 -0.37 1.48 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.12 3.12 6.22 -52.49 -0.33 2.80 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 41 H 0.16 1.14 7.23 -51.93 -0.38 0.76 16 42 H 0.12 0.84 7.85 -51.93 -0.41 0.43 16 43 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -31.72 384.60 -8.01 -39.73 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.86 Total: 9.83 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -5.12 Total: -19.53 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 2.11 Total: -38.32 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.72 -8.01 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791224247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.324 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds