Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47445 * 2 1 4 4 C 1.46499 * 120.00113 * 275.00370 * 3 2 1 5 5 C 1.50701 * 109.47242 * 274.43456 * 4 3 2 6 6 H 1.08003 * 119.99734 * 5.06263 * 5 4 3 7 7 C 1.37878 * 120.00050 * 185.06428 * 5 4 3 8 8 N 1.31509 * 119.99906 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00114 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47055 * 90.00228 * 9 7 5 11 11 H 1.48497 * 109.47488 * 210.00217 * 9 7 5 12 12 H 1.48503 * 109.47152 * 330.00528 * 9 7 5 13 13 S 1.65603 * 119.99742 * 94.99665 * 3 2 1 14 14 O 1.42088 * 106.40593 * 335.25522 * 13 3 2 15 15 O 1.42106 * 106.40002 * 202.33097 * 13 3 2 16 16 N 1.65600 * 107.21383 * 88.79653 * 13 3 2 17 17 C 1.46498 * 120.00069 * 294.26856 * 16 13 3 18 18 H 1.08999 * 109.46806 * 359.11575 * 17 16 13 19 19 C 1.50707 * 109.47174 * 119.11251 * 17 16 13 20 20 C 1.38228 * 119.61659 * 244.98092 * 19 17 16 21 21 C 1.38628 * 119.15616 * 180.02562 * 20 19 17 22 22 C 1.38675 * 118.42113 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.16674 * 359.97438 * 22 21 20 24 24 N 1.31852 * 119.61595 * 65.00204 * 19 17 16 25 25 C 1.52994 * 109.47396 * 239.11645 * 17 16 13 26 26 C 1.52995 * 109.47421 * 59.11353 * 25 17 16 27 27 C 1.52999 * 109.47227 * 179.11675 * 25 17 16 28 28 H 1.09005 * 109.46898 * 59.99602 * 1 2 3 29 29 H 1.08992 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47252 * 300.00227 * 1 2 3 31 31 H 1.08999 * 109.47269 * 240.00330 * 2 1 3 32 32 H 1.08998 * 109.47555 * 120.00316 * 2 1 3 33 33 H 1.09004 * 109.47158 * 34.43365 * 4 3 2 34 34 H 1.09007 * 109.47265 * 154.43156 * 4 3 2 35 35 H 0.97001 * 120.00107 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99800 * 114.27168 * 16 13 3 37 37 H 1.07996 * 120.42237 * 359.97438 * 20 19 17 38 38 H 1.08002 * 120.79214 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.41847 * 179.97438 * 22 21 20 40 40 H 1.07993 * 119.62173 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.47390 * 299.11427 * 25 17 16 42 42 H 1.09005 * 109.46943 * 57.30311 * 26 25 17 43 43 H 1.09001 * 109.47442 * 177.29867 * 26 25 17 44 44 H 1.09005 * 109.47513 * 297.30294 * 26 25 17 45 45 H 1.09003 * 109.47291 * 59.99812 * 27 25 17 46 46 H 1.08997 * 109.47172 * 179.97438 * 27 25 17 47 47 H 1.08998 * 109.47485 * 299.99757 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5005 1.7996 -1.8755 6 1 4.1473 1.0667 -1.4163 7 6 3.9027 2.4525 -3.0214 8 7 5.0741 2.1832 -3.5549 9 14 2.7837 3.7197 -3.8161 10 1 3.0729 5.0610 -3.2481 11 1 3.0220 3.7409 -5.2816 12 1 1.3664 3.3648 -3.5500 13 16 2.4122 2.1202 1.4288 14 8 1.6652 1.4600 2.4412 15 8 2.3334 3.5191 1.1920 16 7 4.0058 1.7860 1.7304 17 6 4.4272 0.4091 2.0003 18 1 3.5580 -0.2482 1.9759 19 6 5.4172 -0.0280 0.9514 20 6 5.0857 -1.0517 0.0836 21 6 6.0037 -1.4465 -0.8771 22 6 7.2265 -0.7944 -0.9291 23 6 7.4873 0.2204 -0.0283 24 7 6.5896 0.5701 0.8724 25 6 5.0821 0.3375 3.3811 26 6 4.0843 0.8023 4.4436 27 6 5.5024 -1.1045 3.6721 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3676 1.8024 -1.9489 34 1 2.0822 3.1799 -1.0769 35 1 5.3570 2.6422 -4.3612 36 1 4.6603 2.5020 1.7284 37 1 4.1241 -1.5382 0.1538 38 1 5.7722 -2.2430 -1.5688 39 1 7.9657 -1.0761 -1.6644 40 1 8.4373 0.7329 -0.0619 41 1 5.9604 0.9828 3.4006 42 1 3.1859 0.1871 4.3921 43 1 4.5343 0.7059 5.4317 44 1 3.8215 1.8448 4.2641 45 1 6.2134 -1.4357 2.9151 46 1 5.9694 -1.1555 4.6556 47 1 4.6242 -1.7499 3.6527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800056955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = -50.025304 kcal Electronic energy + Delta-G solvation = -30500.506579 eV Core-core repulsion = 26616.868926 eV Total energy + Delta-G solvation = -3883.637653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99344 -37.17764 -36.52178 -36.17928 -35.26793 -32.69283 -32.61344 -31.95435 -30.83074 -30.23987 -27.14944 -26.90924 -25.70556 -23.29081 -22.85818 -21.97913 -21.55795 -19.98731 -18.84273 -17.29396 -16.93954 -16.90933 -16.52188 -16.04888 -15.53305 -15.30585 -15.22979 -14.30111 -14.25121 -13.97802 -13.70685 -13.50683 -13.16906 -12.80074 -12.74830 -12.53853 -12.53650 -12.38903 -12.09942 -11.98321 -11.92670 -11.75758 -11.52627 -11.45546 -11.35188 -11.15877 -11.09554 -10.97812 -10.80587 -10.59928 -10.44803 -10.36792 -10.18673 -9.60026 -9.42308 -9.32589 -8.81623 -8.61011 -8.55890 -8.10458 -6.12577 -4.11683 1.21498 1.58365 1.77052 3.26885 3.33507 3.38003 3.45814 4.09909 4.26840 4.37708 4.56845 4.73190 4.87415 5.05853 5.15912 5.21534 5.25444 5.28454 5.36126 5.43278 5.53629 5.58117 5.66191 5.68743 5.75879 5.84835 5.91837 5.98016 5.99113 6.02031 6.06000 6.16287 6.20073 6.24942 6.42881 6.48504 6.53754 6.55895 6.60684 6.64668 6.85823 7.09223 7.11800 7.31801 7.52673 7.59268 8.43119 8.44451 8.93948 9.49035 10.99169 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009627 B = 0.006774 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.642865 B = 4132.524830 C = 5737.359269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.986 5.986 4 C 0.217 3.783 5 C -0.537 4.537 6 H 0.086 0.914 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.784 3.216 14 O -0.992 6.992 15 O -0.983 6.983 16 N -1.108 6.108 17 C 0.221 3.779 18 H 0.093 0.907 19 C 0.127 3.873 20 C -0.152 4.152 21 C -0.063 4.063 22 C -0.162 4.162 23 C 0.105 3.895 24 N -0.468 5.468 25 C -0.097 4.097 26 C -0.145 4.145 27 C -0.143 4.143 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.419 0.581 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -9.265 9.720 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.827 5.827 4 C 0.093 3.907 5 C -0.576 4.576 6 H 0.104 0.896 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.692 3.308 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.190 1.190 13 S 2.792 3.208 14 O -0.975 6.975 15 O -0.967 6.967 16 N -0.865 5.865 17 C 0.112 3.888 18 H 0.110 0.890 19 C -0.013 4.013 20 C -0.173 4.173 21 C -0.090 4.090 22 C -0.182 4.182 23 C -0.053 4.053 24 N -0.178 5.178 25 C -0.118 4.118 26 C -0.203 4.203 27 C -0.201 4.201 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.448 -8.142 10.694 13.448 hybrid contribution -0.046 0.191 -1.898 1.908 sum 0.403 -7.952 8.796 11.864 Atomic orbital electron populations 1.22216 0.96761 1.01571 1.02433 1.21064 0.93792 0.82866 1.02150 1.57536 1.78838 1.22808 1.23485 1.19547 0.98291 0.91979 0.80865 1.21490 1.01125 1.24754 1.10276 0.89589 1.24814 0.94742 0.96266 0.96693 1.69888 1.19367 1.42409 1.21150 0.87025 0.81985 0.83039 0.78767 1.19860 1.21205 1.18981 1.01786 0.72975 0.73068 0.72973 1.93559 1.69856 1.77039 1.57093 1.93578 1.86152 1.31085 1.85870 1.55936 1.29001 1.14197 1.87331 1.19520 0.94813 0.82740 0.91720 0.88951 1.21176 0.92523 0.92076 0.95498 1.21771 1.00040 0.98892 0.96549 1.21388 0.93060 0.98456 0.96047 1.21982 0.98196 0.98064 0.99990 1.22523 0.97906 0.93849 0.90982 1.67265 1.01901 1.26161 1.22425 1.21399 0.99410 0.97720 0.93270 1.21826 0.99057 1.01874 0.97529 1.21786 1.01197 0.95752 1.01362 0.92241 0.92167 0.92395 0.90015 0.91942 0.94777 0.94207 0.92773 0.74702 0.85621 0.85441 0.85512 0.83465 0.89548 0.91902 0.92882 0.92729 0.92743 0.92517 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.13 2.04 6.06 -4.04 -0.02 2.02 16 3 N -0.99 -19.30 2.82 -115.66 -0.33 -19.63 16 4 C 0.22 5.01 4.49 -5.19 -0.02 4.98 16 5 C -0.54 -14.00 9.94 -34.44 -0.34 -14.34 16 6 H 0.09 2.34 7.43 -52.48 -0.39 1.95 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 9 Si 0.86 21.03 27.37 -169.99 -4.65 16.38 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.16 6.69 56.52 0.38 -5.78 16 13 S 2.78 54.14 5.98 -107.50 -0.64 53.49 16 14 O -0.99 -18.84 16.62 -57.17 -0.95 -19.79 16 15 O -0.98 -22.63 16.67 -57.17 -0.95 -23.58 16 16 N -1.11 -19.10 4.67 -5.88 -0.03 -19.13 16 17 C 0.22 3.33 2.22 -69.08 -0.15 3.18 16 18 H 0.09 1.31 5.87 -51.93 -0.30 1.00 16 19 C 0.13 2.06 4.54 -82.58 -0.37 1.69 16 20 C -0.15 -2.36 9.10 -39.44 -0.36 -2.72 16 21 C -0.06 -0.96 10.18 -39.28 -0.40 -1.36 16 22 C -0.16 -2.46 10.11 -39.44 -0.40 -2.86 16 23 C 0.10 1.67 11.18 -17.55 -0.20 1.47 16 24 N -0.47 -7.97 9.86 -9.47 -0.09 -8.06 16 25 C -0.10 -1.27 2.56 -90.63 -0.23 -1.50 16 26 C -0.15 -1.85 8.93 37.16 0.33 -1.52 16 27 C -0.14 -1.59 8.96 37.16 0.33 -1.25 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.31 8.11 -51.93 -0.42 0.88 16 32 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 33 H 0.03 0.77 7.51 -51.93 -0.39 0.38 16 34 H 0.04 0.99 6.06 -51.93 -0.31 0.67 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.42 7.22 8.96 -34.47 -0.31 6.91 16 37 H 0.13 1.68 7.95 -52.49 -0.42 1.26 16 38 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.15 1.99 8.06 -52.49 -0.42 1.56 16 41 H 0.09 1.18 7.92 -51.93 -0.41 0.77 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 45 H 0.05 0.64 7.24 -51.93 -0.38 0.27 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -32.27 393.21 -9.94 -42.22 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.44 Total: 9.22 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.56 Total: -12.24 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: 0.33 Total: -71.63 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.90 Total: -43.37 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.65 Total: 16.38 kcal Atomic # 16 Polarization: 54.14 SS G_CDS: -0.64 Total: 53.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.27 -9.94 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800056955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.808 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds