Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47445 * 2 1 4 4 C 1.46499 * 120.00113 * 275.00370 * 3 2 1 5 5 C 1.50701 * 109.47242 * 274.43456 * 4 3 2 6 6 H 1.08003 * 119.99734 * 5.06263 * 5 4 3 7 7 C 1.37878 * 120.00050 * 185.06428 * 5 4 3 8 8 N 1.31509 * 119.99906 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00114 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47055 * 90.00228 * 9 7 5 11 11 H 1.48497 * 109.47488 * 210.00217 * 9 7 5 12 12 H 1.48503 * 109.47152 * 330.00528 * 9 7 5 13 13 S 1.65603 * 119.99742 * 94.99665 * 3 2 1 14 14 O 1.42088 * 106.40593 * 335.25522 * 13 3 2 15 15 O 1.42106 * 106.40002 * 202.33097 * 13 3 2 16 16 N 1.65600 * 107.21383 * 88.79653 * 13 3 2 17 17 C 1.46498 * 120.00069 * 294.26856 * 16 13 3 18 18 H 1.08999 * 109.46806 * 359.11575 * 17 16 13 19 19 C 1.50707 * 109.47174 * 119.11251 * 17 16 13 20 20 C 1.38228 * 119.61659 * 244.98092 * 19 17 16 21 21 C 1.38628 * 119.15616 * 180.02562 * 20 19 17 22 22 C 1.38675 * 118.42113 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.16674 * 359.97438 * 22 21 20 24 24 N 1.31852 * 119.61595 * 65.00204 * 19 17 16 25 25 C 1.52994 * 109.47396 * 239.11645 * 17 16 13 26 26 C 1.52995 * 109.47421 * 59.11353 * 25 17 16 27 27 C 1.52999 * 109.47227 * 179.11675 * 25 17 16 28 28 H 1.09005 * 109.46898 * 59.99602 * 1 2 3 29 29 H 1.08992 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47252 * 300.00227 * 1 2 3 31 31 H 1.08999 * 109.47269 * 240.00330 * 2 1 3 32 32 H 1.08998 * 109.47555 * 120.00316 * 2 1 3 33 33 H 1.09004 * 109.47158 * 34.43365 * 4 3 2 34 34 H 1.09007 * 109.47265 * 154.43156 * 4 3 2 35 35 H 0.97001 * 120.00107 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99800 * 114.27168 * 16 13 3 37 37 H 1.07996 * 120.42237 * 359.97438 * 20 19 17 38 38 H 1.08002 * 120.79214 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.41847 * 179.97438 * 22 21 20 40 40 H 1.07993 * 119.62173 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.47390 * 299.11427 * 25 17 16 42 42 H 1.09005 * 109.46943 * 57.30311 * 26 25 17 43 43 H 1.09001 * 109.47442 * 177.29867 * 26 25 17 44 44 H 1.09005 * 109.47513 * 297.30294 * 26 25 17 45 45 H 1.09003 * 109.47291 * 59.99812 * 27 25 17 46 46 H 1.08997 * 109.47172 * 179.97438 * 27 25 17 47 47 H 1.08998 * 109.47485 * 299.99757 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5005 1.7996 -1.8755 6 1 4.1473 1.0667 -1.4163 7 6 3.9027 2.4525 -3.0214 8 7 5.0741 2.1832 -3.5549 9 14 2.7837 3.7197 -3.8161 10 1 3.0729 5.0610 -3.2481 11 1 3.0220 3.7409 -5.2816 12 1 1.3664 3.3648 -3.5500 13 16 2.4122 2.1202 1.4288 14 8 1.6652 1.4600 2.4412 15 8 2.3334 3.5191 1.1920 16 7 4.0058 1.7860 1.7304 17 6 4.4272 0.4091 2.0003 18 1 3.5580 -0.2482 1.9759 19 6 5.4172 -0.0280 0.9514 20 6 5.0857 -1.0517 0.0836 21 6 6.0037 -1.4465 -0.8771 22 6 7.2265 -0.7944 -0.9291 23 6 7.4873 0.2204 -0.0283 24 7 6.5896 0.5701 0.8724 25 6 5.0821 0.3375 3.3811 26 6 4.0843 0.8023 4.4436 27 6 5.5024 -1.1045 3.6721 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3676 1.8024 -1.9489 34 1 2.0822 3.1799 -1.0769 35 1 5.3570 2.6422 -4.3612 36 1 4.6603 2.5020 1.7284 37 1 4.1241 -1.5382 0.1538 38 1 5.7722 -2.2430 -1.5688 39 1 7.9657 -1.0761 -1.6644 40 1 8.4373 0.7329 -0.0619 41 1 5.9604 0.9828 3.4006 42 1 3.1859 0.1871 4.3921 43 1 4.5343 0.7059 5.4317 44 1 3.8215 1.8448 4.2641 45 1 6.2134 -1.4357 2.9151 46 1 5.9694 -1.1555 4.6556 47 1 4.6242 -1.7499 3.6527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800056955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = -72.063409 kcal Electronic energy + Delta-G solvation = -30501.462223 eV Core-core repulsion = 26616.868926 eV Total energy + Delta-G solvation = -3884.593297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18049 -38.52868 -37.94523 -37.73228 -36.88926 -34.60080 -33.86827 -33.15088 -32.04837 -31.76585 -28.88465 -27.89199 -26.87891 -24.66384 -24.29323 -23.22748 -23.06010 -21.11070 -20.33154 -18.98917 -18.65499 -18.38739 -17.97127 -17.35860 -16.87489 -16.62206 -16.44341 -16.11979 -15.54659 -15.33545 -14.88938 -14.81758 -14.56075 -14.40940 -14.13161 -13.89388 -13.71668 -13.61641 -13.57018 -13.48343 -13.20477 -13.13119 -13.07198 -12.85604 -12.78095 -12.63343 -12.48237 -12.30317 -12.15649 -12.10072 -11.85102 -11.69667 -11.56347 -11.50719 -10.75448 -10.67762 -10.56646 -10.05837 -9.82409 -9.67244 -8.22026 -6.22889 -0.30593 0.36198 0.57184 1.33447 1.39141 1.43965 1.97051 2.36480 2.59180 3.04724 3.12600 3.39028 3.41692 3.58521 3.91438 3.97983 4.10219 4.17792 4.21530 4.36991 4.39502 4.43103 4.45778 4.47738 4.71688 4.75131 4.79177 4.85925 4.89740 4.93239 4.95976 5.01995 5.03948 5.06627 5.15097 5.25928 5.34312 5.41680 5.43415 5.44483 5.49525 5.54167 5.57905 5.79876 5.95254 6.09672 6.38631 6.84652 7.21954 7.39840 8.91346 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009627 B = 0.006774 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.642865 B = 4132.524830 C = 5737.359269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.989 5.989 4 C 0.224 3.776 5 C -0.527 4.527 6 H 0.070 0.930 7 C 0.029 3.971 8 N -0.926 5.926 9 Si 0.909 3.091 10 H -0.282 1.282 11 H -0.282 1.282 12 H -0.246 1.246 13 S 2.794 3.206 14 O -0.987 6.987 15 O -1.021 7.021 16 N -1.106 6.106 17 C 0.216 3.784 18 H 0.103 0.897 19 C 0.115 3.885 20 C -0.162 4.162 21 C -0.075 4.075 22 C -0.171 4.171 23 C 0.084 3.916 24 N -0.488 5.488 25 C -0.092 4.092 26 C -0.145 4.145 27 C -0.137 4.137 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.417 0.583 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -10.741 10.295 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.829 5.829 4 C 0.099 3.901 5 C -0.566 4.566 6 H 0.088 0.912 7 C -0.171 4.171 8 N -0.566 5.566 9 Si 0.735 3.265 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.170 1.170 13 S 2.803 3.197 14 O -0.970 6.970 15 O -1.006 7.006 16 N -0.864 5.864 17 C 0.108 3.892 18 H 0.121 0.879 19 C -0.025 4.025 20 C -0.183 4.183 21 C -0.101 4.101 22 C -0.190 4.190 23 C -0.073 4.073 24 N -0.197 5.197 25 C -0.113 4.113 26 C -0.202 4.202 27 C -0.195 4.195 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.251 0.749 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.181 0.819 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.610 -9.645 11.285 14.857 hybrid contribution 0.328 0.575 -2.015 2.121 sum -0.282 -9.070 9.270 12.972 Atomic orbital electron populations 1.22204 0.95310 1.03495 1.01717 1.21384 0.95072 0.81021 1.03327 1.57474 1.79272 1.24165 1.22010 1.19273 0.96947 0.91540 0.82338 1.21702 1.01916 1.23429 1.09569 0.91177 1.25455 0.95856 0.98104 0.97655 1.69995 1.20932 1.43866 1.21826 0.86293 0.81613 0.80538 0.78072 1.20824 1.20762 1.16995 1.01360 0.73320 0.72137 0.72918 1.93556 1.70129 1.76646 1.56708 1.93522 1.86930 1.33735 1.86403 1.55803 1.28126 1.15303 1.87135 1.19784 0.95194 0.81467 0.92706 0.87882 1.21367 0.92570 0.92486 0.96036 1.22073 1.00975 0.98869 0.96351 1.21762 0.93021 0.98987 0.96338 1.22292 0.98881 0.97739 1.00128 1.22923 0.98587 0.94506 0.91243 1.67253 1.02527 1.26815 1.23139 1.21355 0.98894 0.98951 0.92081 1.21830 0.99034 1.00793 0.98557 1.21744 1.01557 0.94346 1.01881 0.92901 0.88963 0.93153 0.89863 0.89764 0.93682 0.95817 0.92945 0.74907 0.83723 0.83363 0.83538 0.81932 0.90524 0.92051 0.90765 0.94246 0.93711 0.90930 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.12 3.48 6.06 86.38 0.52 4.00 16 3 N -0.99 -37.51 2.82 -519.83 -1.47 -38.97 16 4 C 0.22 10.15 4.49 85.63 0.38 10.53 16 5 C -0.53 -27.27 9.94 25.60 0.25 -27.01 16 6 H 0.07 3.81 7.43 -2.91 -0.02 3.79 16 7 C 0.03 1.57 5.47 84.66 0.46 2.04 16 8 N -0.93 -53.61 13.96 21.45 0.30 -53.31 16 9 Si 0.91 42.87 27.37 68.60 1.88 44.74 16 10 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.25 -10.76 6.69 99.48 0.67 -10.09 16 13 S 2.79 106.92 5.98 -56.49 -0.34 106.58 16 14 O -0.99 -36.05 16.62 -128.00 -2.13 -38.18 16 15 O -1.02 -47.32 16.67 -128.00 -2.13 -49.45 16 16 N -1.11 -37.84 4.67 -172.53 -0.81 -38.64 16 17 C 0.22 6.31 2.22 44.25 0.10 6.41 16 18 H 0.10 2.72 5.87 -2.39 -0.01 2.71 16 19 C 0.12 3.66 4.54 42.56 0.19 3.86 16 20 C -0.16 -4.85 9.10 22.36 0.20 -4.64 16 21 C -0.08 -2.20 10.18 22.47 0.23 -1.97 16 22 C -0.17 -5.08 10.11 22.36 0.23 -4.85 16 23 C 0.08 2.68 11.18 84.67 0.95 3.63 16 24 N -0.49 -16.61 9.86 -183.89 -1.81 -18.42 16 25 C -0.09 -2.28 2.56 -10.80 -0.03 -2.31 16 26 C -0.14 -3.44 8.93 71.98 0.64 -2.80 16 27 C -0.14 -2.77 8.96 71.98 0.64 -2.13 16 28 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 2.46 8.11 -2.39 -0.02 2.44 16 32 H 0.08 2.12 6.16 -2.39 -0.01 2.10 16 33 H 0.05 1.95 7.51 -2.39 -0.02 1.93 16 34 H 0.02 1.17 6.06 -2.38 -0.01 1.15 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.42 14.64 8.96 -96.74 -0.87 13.77 16 37 H 0.15 3.58 7.95 -2.91 -0.02 3.56 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.08 2.05 7.92 -2.38 -0.02 2.03 16 42 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.04 7.67 -2.38 -0.02 1.02 16 45 H 0.04 0.99 7.24 -2.39 -0.02 0.98 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.37 393.21 -0.94 -69.31 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.06 Total: 35.24 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 5.52 Total: -18.91 kcal Atomic # 7 Polarization: -145.56 SS G_CDS: -3.79 Total: -149.35 kcal Atomic # 8 Polarization: -83.37 SS G_CDS: -4.26 Total: -87.63 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: 106.92 SS G_CDS: -0.34 Total: 106.58 kcal Total: -68.37 -0.94 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800056955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.752 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds