Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47314 * 120.00335 * 2 1 3 5 5 H 1.08994 * 109.46965 * 301.71024 * 4 2 1 6 6 N 1.46501 * 109.47171 * 61.71163 * 4 2 1 7 7 S 1.65600 * 119.99783 * 213.57596 * 6 4 2 8 8 O 1.42094 * 106.40326 * 308.40208 * 7 6 4 9 9 O 1.42097 * 106.40148 * 175.48205 * 7 6 4 10 10 N 1.65602 * 107.21758 * 61.94534 * 7 6 4 11 11 C 1.46501 * 119.99770 * 270.86142 * 10 7 6 12 12 C 1.46496 * 120.00586 * 90.86298 * 10 7 6 13 13 H 1.09005 * 109.47111 * 355.67977 * 12 10 7 14 14 C 1.53003 * 109.47083 * 115.67437 * 12 10 7 15 15 C 1.50696 * 109.47254 * 235.68073 * 12 10 7 16 16 H 1.07995 * 120.00215 * 354.75327 * 15 12 10 17 17 C 1.37886 * 120.00012 * 174.75683 * 15 12 10 18 18 N 1.31509 * 119.99928 * 179.97438 * 17 15 12 19 19 Si 1.86806 * 119.99707 * 359.97438 * 17 15 12 20 20 H 1.48503 * 109.46854 * 89.99861 * 19 17 15 21 21 H 1.48496 * 109.46796 * 209.99986 * 19 17 15 22 22 H 1.48501 * 109.47161 * 329.99994 * 19 17 15 23 23 C 1.50696 * 109.47070 * 181.71015 * 4 2 1 24 24 C 1.38232 * 119.62043 * 124.72951 * 23 4 2 25 25 C 1.38624 * 119.16272 * 179.75758 * 24 23 4 26 26 C 1.38677 * 118.42135 * 0.50568 * 25 24 23 27 27 C 1.38183 * 119.16161 * 359.72898 * 26 25 24 28 28 N 1.31862 * 119.61931 * 305.00151 * 23 4 2 29 29 H 1.09004 * 109.47145 * 304.50712 * 1 2 3 30 30 H 1.08991 * 109.47728 * 64.50899 * 1 2 3 31 31 H 1.09002 * 109.46793 * 184.51133 * 1 2 3 32 32 H 1.09004 * 109.47096 * 240.00409 * 2 1 3 33 33 H 1.09001 * 109.47207 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47577 * 300.00541 * 3 2 1 35 35 H 1.08999 * 109.47272 * 60.00182 * 3 2 1 36 36 H 0.96991 * 120.00256 * 33.57231 * 6 4 2 37 37 H 1.08994 * 109.47672 * 264.76320 * 11 10 7 38 38 H 1.09006 * 109.47236 * 24.76620 * 11 10 7 39 39 H 1.09005 * 109.47148 * 144.76432 * 11 10 7 40 40 H 1.09003 * 109.47122 * 180.02562 * 14 12 10 41 41 H 1.09000 * 109.47509 * 300.00258 * 14 12 10 42 42 H 1.08998 * 109.46712 * 60.00669 * 14 12 10 43 43 H 0.96997 * 119.99635 * 180.02562 * 18 17 15 44 44 H 1.07999 * 120.41775 * 359.97438 * 24 23 4 45 45 H 1.07998 * 120.79163 * 180.26063 * 25 24 23 46 46 H 1.07998 * 120.42453 * 179.71699 * 26 25 24 47 47 H 1.07996 * 119.62184 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6519 -0.2256 2.1389 6 7 1.5857 -2.1139 1.2287 7 16 1.2240 -2.8878 2.6473 8 8 2.3453 -2.7058 3.5009 9 8 0.7193 -4.1669 2.2893 10 7 -0.0337 -2.0678 3.3461 11 6 0.2352 -0.9512 4.2556 12 6 -1.4151 -2.4589 3.0550 13 1 -1.4183 -3.2509 2.3059 14 6 -2.0824 -2.9654 4.3353 15 6 -2.1744 -1.2678 2.5299 16 1 -1.7036 -0.2963 2.5032 17 6 -3.4704 -1.4184 2.0837 18 7 -4.1332 -0.3789 1.6260 19 14 -4.2845 -3.0991 2.1294 20 1 -4.9752 -3.2793 3.4316 21 1 -5.2735 -3.2001 1.0263 22 1 -3.2520 -4.1539 1.9666 23 6 3.5464 -0.6847 1.2705 24 6 4.2017 -0.1663 2.3717 25 6 5.5877 -0.1419 2.3834 26 6 6.2658 -0.6322 1.2776 27 6 5.5427 -1.1305 0.2107 28 7 4.2242 -1.1425 0.2362 29 1 -0.3634 0.5822 0.8469 30 1 -0.3634 0.4422 -0.9275 31 1 -0.3633 -1.0245 0.0808 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.4967 -2.5827 0.3842 37 1 0.2265 -1.3104 5.2846 38 1 1.2120 -0.5243 4.0280 39 1 -0.5329 -0.1879 4.1308 40 1 -3.1101 -3.2568 4.1186 41 1 -1.5332 -3.8269 4.7150 42 1 -2.0792 -2.1735 5.0843 43 1 -5.0449 -0.4848 1.3125 44 1 3.6410 0.2116 3.2138 45 1 6.1265 0.2533 3.2319 46 1 7.3454 -0.6245 1.2504 47 1 6.0633 -1.5146 -0.6540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800914304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = -63.839379 kcal Electronic energy + Delta-G solvation = -30147.486749 eV Core-core repulsion = 26263.250073 eV Total energy + Delta-G solvation = -3884.236676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28513 -38.46466 -38.27690 -37.88393 -36.93604 -34.43442 -33.90832 -33.25581 -32.11150 -31.74920 -27.89133 -27.23648 -26.98823 -26.85456 -24.44700 -23.20938 -22.66045 -21.18417 -20.26264 -19.05101 -18.57916 -18.29145 -17.77903 -17.62050 -16.99502 -16.74952 -16.49384 -16.10887 -15.34462 -15.28435 -14.98455 -14.81114 -14.51837 -14.44445 -14.15812 -14.00717 -13.84300 -13.73873 -13.63025 -13.43558 -13.25346 -13.11712 -13.10987 -12.95915 -12.91810 -12.65289 -12.56780 -12.35321 -12.01487 -11.91890 -11.80161 -11.60518 -11.54327 -11.19417 -10.81156 -10.70885 -10.67383 -10.12715 -9.88928 -9.71449 -8.20674 -6.21079 -0.38181 0.23866 0.46086 1.32628 1.42009 1.48155 1.93031 2.37058 2.54829 2.95498 3.14394 3.29869 3.39500 3.61095 3.90052 3.98248 4.08487 4.12460 4.22766 4.31294 4.33821 4.43698 4.50662 4.63455 4.69496 4.71404 4.71624 4.84068 4.86353 4.89144 4.91337 4.94962 5.11395 5.13666 5.16234 5.26874 5.28605 5.30932 5.34584 5.49894 5.53864 5.56482 5.67593 5.84241 5.86584 6.08553 6.43101 6.84379 7.13634 7.42538 8.93264 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.004535 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.588317 B = 6172.871419 C = 6954.034236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C -0.136 4.136 4 C 0.213 3.787 5 H 0.098 0.902 6 N -1.107 6.107 7 S 2.793 3.207 8 O -0.995 6.995 9 O -1.017 7.017 10 N -0.986 5.986 11 C 0.094 3.906 12 C 0.240 3.760 13 H 0.039 0.961 14 C -0.158 4.158 15 C -0.500 4.500 16 H 0.073 0.927 17 C 0.036 3.964 18 N -0.930 5.930 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.298 1.298 22 H -0.259 1.259 23 C 0.103 3.897 24 C -0.167 4.167 25 C -0.079 4.079 26 C -0.170 4.170 27 C 0.079 3.921 28 N -0.492 5.492 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.420 0.580 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.263 0.737 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.591 3.444 0.028 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.194 4.194 4 C 0.105 3.895 5 H 0.115 0.885 6 N -0.867 5.867 7 S 2.802 3.198 8 O -0.978 6.978 9 O -1.002 7.002 10 N -0.827 5.827 11 C -0.051 4.051 12 C 0.134 3.866 13 H 0.056 0.944 14 C -0.217 4.217 15 C -0.539 4.539 16 H 0.091 0.909 17 C -0.163 4.163 18 N -0.570 5.570 19 Si 0.732 3.268 20 H -0.191 1.191 21 H -0.225 1.225 22 H -0.183 1.183 23 C -0.036 4.036 24 C -0.188 4.188 25 C -0.105 4.105 26 C -0.190 4.190 27 C -0.078 4.078 28 N -0.202 5.202 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.159 0.841 45 H 0.179 0.821 46 H 0.183 0.817 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 18.419 2.473 -0.206 18.586 hybrid contribution -0.862 -0.399 0.061 0.951 sum 17.557 2.074 -0.145 17.680 Atomic orbital electron populations 1.21703 0.94049 1.01968 1.01359 1.21226 0.95492 0.96742 0.96579 1.21731 1.00409 0.94527 1.02726 1.19758 0.87517 0.81066 1.01167 0.88463 1.55790 1.82498 1.23041 1.25324 1.01365 0.72677 0.72538 0.73171 1.93549 1.51068 1.86702 1.66489 1.93535 1.81209 1.41043 1.84398 1.57368 1.18940 1.47648 1.58735 1.21537 1.01496 0.89134 0.92961 1.18879 0.78708 0.95241 0.93780 0.94355 1.22346 0.99147 1.00531 0.99720 1.21286 0.97303 0.95413 1.39911 0.90882 1.25339 0.97909 0.98113 0.94956 1.69955 1.11819 1.30984 1.44253 0.86518 0.79330 0.83334 0.77586 1.19072 1.22497 1.18348 1.21513 0.96377 0.95094 0.90635 1.22203 0.96544 1.00980 0.99048 1.21946 0.93591 0.95900 0.99085 1.22502 1.02934 0.99333 0.94225 1.23255 0.89271 0.95984 0.99288 1.67364 1.10195 1.15325 1.27304 0.93368 0.92888 0.93453 0.90025 0.92919 0.91578 0.92115 0.74499 0.91997 0.90629 0.90446 0.93990 0.93482 0.91115 0.92762 0.84105 0.82118 0.81727 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.11 71.98 0.66 -3.69 16 2 C -0.08 -2.17 2.46 -10.79 -0.03 -2.19 16 3 C -0.14 -3.12 8.92 71.98 0.64 -2.48 16 4 C 0.21 6.02 2.13 44.24 0.09 6.12 16 5 H 0.10 2.67 5.76 -2.39 -0.01 2.65 16 6 N -1.11 -35.41 4.75 -172.53 -0.82 -36.23 16 7 S 2.79 103.79 5.96 -56.49 -0.34 103.45 16 8 O -0.99 -37.46 16.96 -128.00 -2.17 -39.63 16 9 O -1.02 -44.75 16.72 -128.00 -2.14 -46.89 16 10 N -0.99 -36.86 3.12 -520.44 -1.62 -38.49 16 11 C 0.09 2.91 9.08 127.77 1.16 4.07 16 12 C 0.24 10.54 2.17 44.25 0.10 10.63 16 13 H 0.04 1.85 5.66 -2.38 -0.01 1.83 16 14 C -0.16 -6.44 8.83 71.98 0.64 -5.80 16 15 C -0.50 -24.57 8.64 25.60 0.22 -24.35 16 16 H 0.07 3.76 6.64 -2.91 -0.02 3.74 16 17 C 0.04 1.91 5.45 84.66 0.46 2.37 16 18 N -0.93 -52.68 13.96 21.45 0.30 -52.38 16 19 Si 0.90 42.42 24.65 68.60 1.69 44.11 16 20 H -0.26 -11.87 6.88 99.48 0.68 -11.19 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.26 -12.02 6.39 99.48 0.64 -11.38 16 23 C 0.10 2.74 4.41 42.55 0.19 2.93 16 24 C -0.17 -3.89 9.71 22.36 0.22 -3.68 16 25 C -0.08 -1.44 10.18 22.47 0.23 -1.21 16 26 C -0.17 -2.78 10.11 22.36 0.23 -2.55 16 27 C 0.08 1.59 11.18 84.67 0.95 2.54 16 28 N -0.49 -12.88 9.91 -183.88 -1.82 -14.71 16 29 H 0.05 1.71 7.78 -2.38 -0.02 1.70 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.73 7.52 -2.39 -0.02 1.72 16 32 H 0.08 2.22 7.99 -2.38 -0.02 2.20 16 33 H 0.05 1.17 7.16 -2.39 -0.02 1.15 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.42 12.76 8.82 -96.76 -0.85 11.91 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.96 6.21 -2.38 -0.01 1.94 16 39 H 0.08 2.54 6.55 -2.38 -0.02 2.52 16 40 H 0.04 1.76 3.98 -2.39 -0.01 1.75 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 2.65 7.78 -2.39 -0.02 2.63 16 43 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 44 H 0.14 2.92 7.95 -2.91 -0.02 2.90 16 45 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 47 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -67.09 381.83 -1.14 -68.23 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.03 Total: 29.81 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 5.75 Total: -17.29 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -3.97 Total: -141.81 kcal Atomic # 8 Polarization: -82.21 SS G_CDS: -4.31 Total: -86.52 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.69 Total: 44.11 kcal Atomic # 16 Polarization: 103.79 SS G_CDS: -0.34 Total: 103.45 kcal Total: -67.09 -1.14 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.392 kcal (2) G-P(sol) polarization free energy of solvation -67.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds