Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46804 * 2 1 4 4 C 1.53003 * 109.47174 * 119.99284 * 2 1 3 5 5 H 1.09002 * 109.47273 * 300.24199 * 4 2 1 6 6 N 1.46504 * 109.46668 * 60.23464 * 4 2 1 7 7 S 1.65594 * 119.99964 * 214.65341 * 6 4 2 8 8 O 1.42099 * 106.40526 * 312.32692 * 7 6 4 9 9 O 1.42105 * 106.40000 * 179.40664 * 7 6 4 10 10 N 1.65603 * 107.21706 * 65.87013 * 7 6 4 11 11 C 1.46493 * 120.00145 * 270.29551 * 10 7 6 12 12 C 1.46502 * 119.99763 * 90.29602 * 10 7 6 13 13 H 1.09001 * 109.47560 * 358.92493 * 12 10 7 14 14 C 1.52998 * 109.46846 * 238.92962 * 12 10 7 15 15 C 1.50700 * 109.47090 * 118.93016 * 12 10 7 16 16 H 1.07996 * 120.00112 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99950 * 179.97438 * 15 12 10 18 18 N 1.31515 * 119.99753 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00116 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47277 * 89.99803 * 19 17 15 21 21 H 1.48504 * 109.47122 * 210.00130 * 19 17 15 22 22 H 1.48500 * 109.47110 * 330.00078 * 19 17 15 23 23 C 1.50697 * 109.47198 * 180.23700 * 4 2 1 24 24 C 1.38224 * 119.61823 * 124.73296 * 23 4 2 25 25 C 1.38624 * 119.16406 * 179.75655 * 24 23 4 26 26 C 1.38682 * 118.41688 * 0.50417 * 25 24 23 27 27 C 1.38181 * 119.16131 * 359.73486 * 26 25 24 28 28 N 1.31850 * 119.61843 * 305.00415 * 23 4 2 29 29 H 1.09004 * 109.47663 * 302.62685 * 1 2 3 30 30 H 1.08997 * 109.47440 * 62.63258 * 1 2 3 31 31 H 1.09005 * 109.47343 * 182.62930 * 1 2 3 32 32 H 1.08992 * 109.47484 * 240.00047 * 2 1 3 33 33 H 1.08992 * 109.47400 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.47065 * 299.99858 * 3 2 1 35 35 H 1.08998 * 109.47342 * 59.99458 * 3 2 1 36 36 H 0.97002 * 119.99488 * 34.66873 * 6 4 2 37 37 H 1.09001 * 109.46847 * 274.80636 * 11 10 7 38 38 H 1.09003 * 109.46904 * 34.80245 * 11 10 7 39 39 H 1.08999 * 109.47321 * 154.80201 * 11 10 7 40 40 H 1.09001 * 109.47200 * 174.27762 * 14 12 10 41 41 H 1.09000 * 109.47750 * 54.27619 * 14 12 10 42 42 H 1.08998 * 109.47411 * 294.27129 * 14 12 10 43 43 H 0.97011 * 119.99555 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.41778 * 359.97438 * 24 23 4 45 45 H 1.08003 * 120.79433 * 180.26416 * 25 24 23 46 46 H 1.08000 * 120.41770 * 179.70993 * 26 25 24 47 47 H 1.07994 * 119.61567 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6731 -0.2097 2.1393 6 7 1.5562 -2.1040 1.2466 7 16 1.1702 -2.8489 2.6742 8 8 2.2511 -2.5993 3.5623 9 8 0.7271 -4.1565 2.3375 10 7 -0.1424 -2.0573 3.3010 11 6 0.0505 -0.9127 4.1946 12 6 -1.4965 -2.5018 2.9617 13 1 -1.4404 -3.3472 2.2760 14 6 -2.2578 -1.3542 2.2950 15 6 -2.2172 -2.9203 4.2173 16 1 -1.7166 -2.8615 5.1724 17 6 -3.5158 -3.3782 4.1466 18 7 -4.1253 -3.4502 2.9835 19 14 -4.4090 -3.8976 5.7029 20 1 -5.1160 -2.7272 6.2820 21 1 -5.3944 -4.9597 5.3770 22 1 -3.4265 -4.4190 6.6868 23 6 3.5470 -0.7160 1.2523 24 6 4.2262 -0.2022 2.3409 25 6 5.6125 -0.2068 2.3359 26 6 6.2667 -0.7209 1.2264 27 6 5.5203 -1.2129 0.1727 28 7 4.2022 -1.1969 0.2141 29 1 -0.3634 0.5541 0.8655 30 1 -0.3634 0.4724 -0.9126 31 1 -0.3634 -1.0266 0.0471 32 1 1.8933 -0.5138 -0.8899 33 1 3.1298 1.4426 0.0005 34 1 1.6765 1.9564 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.4623 -2.5832 0.4085 37 1 0.1885 -1.2682 5.2158 38 1 0.9320 -0.3527 3.8826 39 1 -0.8255 -0.2656 4.1505 40 1 -3.2280 -1.7131 1.9513 41 1 -1.6853 -0.9839 1.4447 42 1 -2.4027 -0.5481 3.0142 43 1 -5.0391 -3.7721 2.9339 44 1 3.6838 0.1947 3.1864 45 1 6.1698 0.1841 3.1744 46 1 7.3458 -0.7360 1.1863 47 1 6.0222 -1.6145 -0.6951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800914310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = -68.999336 kcal Electronic energy + Delta-G solvation = -29837.947136 eV Core-core repulsion = 25953.486707 eV Total energy + Delta-G solvation = -3884.460429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29276 -38.45940 -38.21086 -37.75719 -36.87923 -34.50570 -33.91510 -33.26614 -32.13656 -30.90801 -28.01007 -27.18540 -27.08031 -26.80155 -24.46328 -23.23940 -22.58350 -21.14537 -20.25548 -18.77499 -18.59872 -18.30346 -17.72996 -17.54857 -16.94314 -16.67638 -16.51069 -16.07196 -15.36900 -15.19591 -14.92910 -14.84797 -14.57565 -14.41833 -14.00502 -13.81020 -13.70555 -13.68100 -13.33421 -13.20915 -13.19995 -13.10189 -12.97395 -12.89088 -12.74819 -12.57853 -12.56614 -12.28271 -12.13064 -12.05274 -11.81028 -11.78699 -11.52601 -11.04242 -10.83808 -10.72176 -10.48171 -10.14459 -9.89751 -9.64109 -8.09762 -6.22456 -0.36439 0.23196 0.44438 1.41894 1.44437 1.53481 2.04564 2.44166 2.61386 2.95381 3.18802 3.30317 3.42235 3.59286 3.90817 3.99294 4.08635 4.11873 4.24936 4.30809 4.32879 4.42277 4.65919 4.70791 4.71127 4.82452 4.86014 4.88574 4.90041 5.04318 5.07843 5.09623 5.12864 5.20378 5.22665 5.27579 5.30501 5.33574 5.52009 5.55697 5.65246 5.74158 5.84748 5.92244 6.04611 6.21050 6.33568 6.85037 7.11785 7.46159 8.94355 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003778 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.819964 B = 7409.897892 C = 8005.194316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.137 4.137 4 C 0.209 3.791 5 H 0.101 0.899 6 N -1.106 6.106 7 S 2.791 3.209 8 O -1.003 7.003 9 O -1.022 7.022 10 N -0.992 5.992 11 C 0.101 3.899 12 C 0.275 3.725 13 H 0.021 0.979 14 C -0.138 4.138 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.019 3.981 18 N -0.912 5.912 19 Si 0.952 3.048 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.100 3.900 24 C -0.167 4.167 25 C -0.082 4.082 26 C -0.171 4.171 27 C 0.079 3.921 28 N -0.491 5.491 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.420 0.580 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.263 0.737 44 H 0.141 0.859 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.113 13.302 -6.026 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.195 4.195 4 C 0.101 3.899 5 H 0.119 0.881 6 N -0.866 5.866 7 S 2.800 3.200 8 O -0.986 6.986 9 O -1.006 7.006 10 N -0.834 5.834 11 C -0.044 4.044 12 C 0.171 3.829 13 H 0.038 0.962 14 C -0.197 4.197 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.039 4.039 24 C -0.188 4.188 25 C -0.108 4.108 26 C -0.190 4.190 27 C -0.078 4.078 28 N -0.201 5.201 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.255 0.745 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.159 0.841 45 H 0.177 0.823 46 H 0.182 0.818 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 16.934 12.256 -6.227 21.811 hybrid contribution -0.509 -0.460 1.047 1.251 sum 16.425 11.796 -5.180 20.875 Atomic orbital electron populations 1.21966 0.94128 1.01992 1.02689 1.21252 0.96068 0.96765 0.96259 1.21747 1.00391 0.94313 1.03080 1.19887 0.87257 0.81212 1.01510 0.88140 1.55881 1.81325 1.23994 1.25391 1.01391 0.72667 0.72512 0.73406 1.93517 1.54113 1.86112 1.64837 1.93546 1.82721 1.39476 1.84845 1.57542 1.20291 1.45705 1.59890 1.21428 1.02348 0.87660 0.92992 1.18385 0.77023 0.92890 0.94578 0.96158 1.22021 1.01278 0.97628 0.98765 1.21672 0.98293 1.43636 0.94272 0.92735 1.25600 0.98143 0.95479 0.98890 1.69994 1.13087 1.47166 1.24881 0.85648 0.78250 0.78218 0.80052 1.19367 1.21050 1.20148 1.21570 0.96709 0.94995 0.90593 1.22220 0.96307 1.01079 0.99154 1.21955 0.93895 0.95984 0.98921 1.22502 1.02935 0.99300 0.94312 1.23251 0.89151 0.96080 0.99357 1.67363 1.10894 1.14976 1.26826 0.91980 0.91224 0.93340 0.90094 0.93460 0.91106 0.91596 0.74457 0.93986 0.90450 0.89791 0.92190 0.92795 0.94053 0.92741 0.84107 0.82275 0.81818 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.00 71.98 0.58 -2.79 16 2 C -0.08 -1.77 2.48 -10.79 -0.03 -1.80 16 3 C -0.14 -2.38 8.94 71.98 0.64 -1.73 16 4 C 0.21 5.29 2.08 44.24 0.09 5.38 16 5 H 0.10 2.36 5.76 -2.39 -0.01 2.35 16 6 N -1.11 -34.00 4.71 -172.51 -0.81 -34.81 16 7 S 2.79 111.40 6.02 -56.49 -0.34 111.06 16 8 O -1.00 -41.02 17.06 -128.00 -2.18 -43.21 16 9 O -1.02 -50.61 16.70 -128.00 -2.14 -52.75 16 10 N -0.99 -39.91 3.12 -520.46 -1.62 -41.54 16 11 C 0.10 3.30 9.38 127.77 1.20 4.50 16 12 C 0.28 13.38 2.61 44.24 0.12 13.50 16 13 H 0.02 1.15 6.92 -2.39 -0.02 1.13 16 14 C -0.14 -5.93 8.73 71.98 0.63 -5.30 16 15 C -0.54 -29.22 8.38 25.60 0.21 -29.01 16 16 H 0.05 2.95 7.68 -2.91 -0.02 2.93 16 17 C 0.02 1.03 5.30 84.65 0.45 1.48 16 18 N -0.91 -51.27 11.38 21.45 0.24 -51.03 16 19 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 C 0.10 2.54 4.48 42.55 0.19 2.74 16 24 C -0.17 -3.79 9.71 22.36 0.22 -3.57 16 25 C -0.08 -1.47 10.18 22.47 0.23 -1.24 16 26 C -0.17 -2.75 10.11 22.36 0.23 -2.53 16 27 C 0.08 1.54 11.18 84.67 0.95 2.48 16 28 N -0.49 -12.29 9.88 -183.90 -1.82 -14.11 16 29 H 0.06 1.37 7.66 -2.39 -0.02 1.35 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.28 6.40 -2.38 -0.02 1.27 16 32 H 0.08 1.82 7.95 -2.39 -0.02 1.80 16 33 H 0.05 0.87 7.21 -2.39 -0.02 0.85 16 34 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.42 12.22 8.83 -96.74 -0.85 11.37 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.95 6.15 -2.39 -0.01 1.94 16 39 H 0.08 2.61 6.49 -2.39 -0.02 2.60 16 40 H 0.06 2.95 6.24 -2.39 -0.01 2.93 16 41 H 0.05 1.93 5.07 -2.39 -0.01 1.92 16 42 H 0.04 1.68 6.86 -2.39 -0.02 1.66 16 43 H 0.26 14.11 8.31 -92.70 -0.77 13.33 16 44 H 0.14 2.86 7.95 -2.91 -0.02 2.84 16 45 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -72.22 383.55 -0.82 -73.04 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.13 Total: 25.68 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.70 Total: -17.90 kcal Atomic # 7 Polarization: -137.47 SS G_CDS: -4.01 Total: -141.49 kcal Atomic # 8 Polarization: -91.63 SS G_CDS: -4.32 Total: -95.95 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 111.40 SS G_CDS: -0.34 Total: 111.06 kcal Total: -72.22 -0.82 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.036 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds