Wall clock time and date at job start Sat Apr 11 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47237 * 2 1 4 4 C 1.34230 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99709 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.58665 * 1.54535 * 6 4 3 8 8 C 1.53188 * 109.58758 * 121.83476 * 6 4 3 9 9 C 1.53044 * 109.33848 * 174.39986 * 8 6 4 10 10 C 1.53037 * 109.54286 * 298.68548 * 9 8 6 11 11 C 1.53190 * 109.33867 * 61.31207 * 10 9 8 12 12 N 1.46928 * 109.58020 * 241.12218 * 6 4 3 13 13 C 1.34773 * 120.63533 * 6.58694 * 12 6 4 14 14 O 1.21280 * 120.00256 * 6.03083 * 13 12 6 15 15 C 1.50705 * 120.00159 * 186.03965 * 13 12 6 16 16 O 1.45195 * 109.46919 * 179.97438 * 15 13 12 17 17 C 1.34233 * 117.00066 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99662 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00239 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46853 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.46885 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00104 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00110 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00086 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00221 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46627 * 60.00404 * 25 23 21 27 27 H 1.48496 * 109.47030 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47183 * 300.00409 * 25 23 21 29 29 H 1.08997 * 109.46916 * 299.99754 * 1 2 3 30 30 H 1.09004 * 109.47054 * 59.99934 * 1 2 3 31 31 H 1.08993 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47116 * 240.00045 * 2 1 3 33 33 H 1.08992 * 109.47125 * 120.00520 * 2 1 3 34 34 H 1.09001 * 109.49942 * 294.37021 * 8 6 4 35 35 H 1.09007 * 109.49909 * 54.43828 * 8 6 4 36 36 H 1.08995 * 109.45524 * 58.67372 * 9 8 6 37 37 H 1.09001 * 109.46072 * 178.62558 * 9 8 6 38 38 H 1.09007 * 109.46859 * 301.36589 * 10 9 8 39 39 H 1.08998 * 109.52378 * 181.29902 * 10 9 8 40 40 H 1.09004 * 109.58869 * 185.59476 * 11 10 9 41 41 H 1.09000 * 109.58719 * 65.16797 * 11 10 9 42 42 H 1.08994 * 109.46923 * 299.99461 * 15 13 12 43 43 H 1.08999 * 109.47187 * 59.99755 * 15 13 12 44 44 H 1.09002 * 109.46318 * 299.99367 * 19 17 16 45 45 H 1.08994 * 109.47657 * 59.99291 * 19 17 16 46 46 H 1.09005 * 109.46882 * 299.99304 * 20 19 17 47 47 H 1.08997 * 109.47226 * 59.99496 * 20 19 17 48 48 H 0.97001 * 120.00405 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1118 3.6674 0.0285 8 6 4.8211 3.1203 1.2258 9 6 5.5120 4.4837 1.1483 10 6 6.3856 4.5442 -0.1068 11 6 5.5030 4.3774 -1.3477 12 7 4.7262 3.1376 -1.2124 13 6 4.7522 2.2017 -2.1819 14 8 4.0245 1.2342 -2.1105 15 6 5.6859 2.3574 -3.3546 16 8 5.5271 1.2277 -4.2529 17 6 6.2922 1.2138 -5.3557 18 8 7.0686 2.1160 -5.5637 19 6 6.1820 0.0736 -6.3349 20 6 7.1555 0.3004 -7.4933 21 6 7.0458 -0.8401 -8.4722 22 1 6.3509 -1.6459 -8.2869 23 6 7.8318 -0.8544 -9.6049 24 7 8.6776 0.1270 -9.8308 25 14 7.6963 -2.2685 -10.8180 26 1 6.3091 -2.3389 -11.3431 27 1 8.6411 -2.0483 -11.9423 28 1 8.0315 -3.5425 -10.1326 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.2171 3.0695 2.1317 35 1 5.5735 2.3318 1.2455 36 1 4.7589 5.2703 1.1042 37 1 6.1344 4.6262 2.0317 38 1 7.1236 3.7426 -0.0749 39 1 6.8954 5.5067 -0.1497 40 1 6.1302 4.3204 -2.2374 41 1 4.8244 5.2265 -1.4304 42 1 5.4516 3.2799 -3.8856 43 1 6.7150 2.3951 -2.9972 44 1 6.4276 -0.8618 -5.8323 45 1 5.1637 0.0226 -6.7202 46 1 6.9104 1.2360 -7.9960 47 1 8.1737 0.3511 -7.1076 48 1 9.2308 0.1168 -10.6275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:16 Heat of formation + Delta-G solvation = -210.466717 kcal Electronic energy + Delta-G solvation = -30415.357854 eV Core-core repulsion = 26049.717317 eV Total energy + Delta-G solvation = -4365.640537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49875 -40.13512 -39.40530 -37.82631 -36.53112 -36.03421 -33.59949 -33.50794 -32.49280 -31.56600 -31.18997 -29.00275 -26.44582 -25.69260 -24.71368 -23.20979 -22.39314 -21.44645 -21.34341 -19.89907 -19.40641 -18.19516 -17.55905 -17.12828 -16.80997 -16.67139 -16.43975 -16.09012 -15.90672 -15.39828 -15.12530 -14.81610 -14.49109 -14.45643 -14.11034 -13.98906 -13.78470 -13.49855 -13.29439 -13.08426 -12.86152 -12.39870 -12.26434 -12.24414 -12.10126 -11.95794 -11.71271 -11.69323 -11.39983 -11.24985 -11.21422 -10.93432 -10.66426 -10.61451 -10.56200 -10.34308 -10.04177 -10.02098 -9.87570 -9.56860 -9.19232 -9.17735 -8.36917 -6.01098 -4.05811 1.78999 2.22812 2.45191 2.52330 2.74500 3.23522 3.34260 3.38479 3.41421 4.04853 4.19481 4.31204 4.35031 4.42610 4.45520 4.57813 4.65302 4.78055 4.84511 4.86140 4.91325 4.98621 5.03389 5.14348 5.18371 5.24427 5.34059 5.34383 5.46022 5.46330 5.52304 5.54265 5.62352 5.75168 5.79153 5.90150 6.13182 6.20739 6.44199 6.54420 6.78539 6.86942 7.66014 7.67454 7.72728 7.86041 7.97927 8.20184 8.37446 9.00811 9.58197 11.09911 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002331 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.291754 B =12010.572236 C =13714.856408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 O -0.360 6.360 4 C 0.476 3.524 5 O -0.489 6.489 6 C 0.160 3.840 7 H 0.104 0.896 8 C -0.126 4.126 9 C -0.116 4.116 10 C -0.141 4.141 11 C 0.106 3.894 12 N -0.607 5.607 13 C 0.516 3.484 14 O -0.488 6.488 15 C 0.053 3.947 16 O -0.342 6.342 17 C 0.460 3.540 18 O -0.506 6.506 19 C -0.102 4.102 20 C 0.034 3.966 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.890 5.890 25 Si 0.896 3.104 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.181 11.298 26.643 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 O -0.278 6.278 4 C 0.318 3.682 5 O -0.375 6.375 6 C 0.055 3.945 7 H 0.122 0.878 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.179 4.179 11 C -0.016 4.016 12 N -0.347 5.347 13 C 0.304 3.696 14 O -0.360 6.360 15 C -0.025 4.025 16 O -0.259 6.259 17 C 0.304 3.696 18 O -0.392 6.392 19 C -0.139 4.139 20 C -0.003 4.003 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.143 4.143 24 N -0.529 5.529 25 Si 0.724 3.276 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.013 10.770 26.478 31.006 hybrid contribution 0.158 -0.629 -0.675 0.936 sum -11.855 10.141 25.803 30.152 Atomic orbital electron populations 1.21800 0.92850 1.02909 1.03245 1.22963 0.94862 0.79976 1.02787 1.86381 1.24168 1.32736 1.84472 1.22607 0.81205 0.91504 0.72890 1.90681 1.60140 1.42459 1.44236 1.20676 0.94137 0.93047 0.86594 0.87809 1.21925 0.99407 0.99591 0.95478 1.21502 0.99252 0.96158 0.98463 1.21986 0.98332 1.03454 0.94103 1.21941 0.94472 0.85433 0.99748 1.47966 1.48811 1.20330 1.17622 1.20369 0.83794 0.82124 0.83315 1.90757 1.40364 1.29647 1.75280 1.22481 0.99611 0.90734 0.89626 1.86676 1.61799 1.44366 1.33029 1.24962 0.76482 0.88563 0.79640 1.90632 1.36222 1.37725 1.74627 1.21804 1.04653 0.93142 0.94322 1.19027 0.93500 0.97814 0.89958 1.21122 1.22586 1.07005 1.05981 0.92303 1.25013 0.95159 0.96129 0.97990 1.69978 1.23935 1.31649 1.27311 0.86591 0.77931 0.82525 0.80560 1.20141 1.21257 1.20142 0.91785 0.91468 0.90269 0.90658 0.91668 0.89839 0.89886 0.91129 0.90607 0.90822 0.89760 0.88756 0.90133 0.88264 0.88209 0.88703 0.88714 0.95540 0.95542 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.78 16 2 C 0.07 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -4.50 10.22 -41.14 -0.42 -4.92 16 4 C 0.48 6.32 4.52 36.01 0.16 6.48 16 5 O -0.49 -8.20 14.33 -26.92 -0.39 -8.58 16 6 C 0.16 1.48 3.34 -68.75 -0.23 1.25 16 7 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.13 -0.85 5.31 -26.61 -0.14 -1.00 16 9 C -0.12 -0.51 5.89 -26.69 -0.16 -0.67 16 10 C -0.14 -0.69 6.08 -26.61 -0.16 -0.85 16 11 C 0.11 0.65 6.35 -3.71 -0.02 0.62 16 12 N -0.61 -6.08 2.97 -166.53 -0.49 -6.57 16 13 C 0.52 7.29 7.47 -10.98 -0.08 7.20 16 14 O -0.49 -8.84 12.26 -26.63 -0.33 -9.17 16 15 C 0.05 0.74 4.30 36.01 0.15 0.89 16 16 O -0.34 -6.24 9.75 -45.91 -0.45 -6.69 16 17 C 0.46 9.29 7.96 36.01 0.29 9.58 16 18 O -0.51 -11.21 15.73 -18.75 -0.29 -11.51 16 19 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 20 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 21 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 22 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 25 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.98 8.13 -51.92 -0.42 0.56 16 33 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.73 7.94 -51.92 -0.41 0.32 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.56 5.93 -51.93 -0.31 0.25 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 1.17 7.69 -51.93 -0.40 0.77 16 43 H 0.10 1.25 7.93 -51.93 -0.41 0.84 16 44 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 46 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -37.72 397.38 -8.77 -46.49 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -7.83 Total: -3.86 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.27 Total: 8.53 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.24 Total: -32.94 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.88 Total: -40.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.72 -8.77 -46.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.981 kcal (2) G-P(sol) polarization free energy of solvation -37.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds