Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47237 * 2 1 4 4 C 1.34230 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99709 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.58665 * 1.54535 * 6 4 3 8 8 C 1.53188 * 109.58758 * 121.83476 * 6 4 3 9 9 C 1.53044 * 109.33848 * 174.39986 * 8 6 4 10 10 C 1.53037 * 109.54286 * 298.68548 * 9 8 6 11 11 C 1.53190 * 109.33867 * 61.31207 * 10 9 8 12 12 N 1.46928 * 109.58020 * 241.12218 * 6 4 3 13 13 C 1.34773 * 120.63533 * 6.58694 * 12 6 4 14 14 O 1.21280 * 120.00256 * 6.03083 * 13 12 6 15 15 C 1.50705 * 120.00159 * 186.03965 * 13 12 6 16 16 O 1.45195 * 109.46919 * 179.97438 * 15 13 12 17 17 C 1.34233 * 117.00066 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99662 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00239 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46853 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.46885 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00104 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00110 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00086 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00221 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46627 * 60.00404 * 25 23 21 27 27 H 1.48496 * 109.47030 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47183 * 300.00409 * 25 23 21 29 29 H 1.08997 * 109.46916 * 299.99754 * 1 2 3 30 30 H 1.09004 * 109.47054 * 59.99934 * 1 2 3 31 31 H 1.08993 * 109.46956 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47116 * 240.00045 * 2 1 3 33 33 H 1.08992 * 109.47125 * 120.00520 * 2 1 3 34 34 H 1.09001 * 109.49942 * 294.37021 * 8 6 4 35 35 H 1.09007 * 109.49909 * 54.43828 * 8 6 4 36 36 H 1.08995 * 109.45524 * 58.67372 * 9 8 6 37 37 H 1.09001 * 109.46072 * 178.62558 * 9 8 6 38 38 H 1.09007 * 109.46859 * 301.36589 * 10 9 8 39 39 H 1.08998 * 109.52378 * 181.29902 * 10 9 8 40 40 H 1.09004 * 109.58869 * 185.59476 * 11 10 9 41 41 H 1.09000 * 109.58719 * 65.16797 * 11 10 9 42 42 H 1.08994 * 109.46923 * 299.99461 * 15 13 12 43 43 H 1.08999 * 109.47187 * 59.99755 * 15 13 12 44 44 H 1.09002 * 109.46318 * 299.99367 * 19 17 16 45 45 H 1.08994 * 109.47657 * 59.99291 * 19 17 16 46 46 H 1.09005 * 109.46882 * 299.99304 * 20 19 17 47 47 H 1.08997 * 109.47226 * 59.99496 * 20 19 17 48 48 H 0.97001 * 120.00405 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1118 3.6674 0.0285 8 6 4.8211 3.1203 1.2258 9 6 5.5120 4.4837 1.1483 10 6 6.3856 4.5442 -0.1068 11 6 5.5030 4.3774 -1.3477 12 7 4.7262 3.1376 -1.2124 13 6 4.7522 2.2017 -2.1819 14 8 4.0245 1.2342 -2.1105 15 6 5.6859 2.3574 -3.3546 16 8 5.5271 1.2277 -4.2529 17 6 6.2922 1.2138 -5.3557 18 8 7.0686 2.1160 -5.5637 19 6 6.1820 0.0736 -6.3349 20 6 7.1555 0.3004 -7.4933 21 6 7.0458 -0.8401 -8.4722 22 1 6.3509 -1.6459 -8.2869 23 6 7.8318 -0.8544 -9.6049 24 7 8.6776 0.1270 -9.8308 25 14 7.6963 -2.2685 -10.8180 26 1 6.3091 -2.3389 -11.3431 27 1 8.6411 -2.0483 -11.9423 28 1 8.0315 -3.5425 -10.1326 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.2171 3.0695 2.1317 35 1 5.5735 2.3318 1.2455 36 1 4.7589 5.2703 1.1042 37 1 6.1344 4.6262 2.0317 38 1 7.1236 3.7426 -0.0749 39 1 6.8954 5.5067 -0.1497 40 1 6.1302 4.3204 -2.2374 41 1 4.8244 5.2265 -1.4304 42 1 5.4516 3.2799 -3.8856 43 1 6.7150 2.3951 -2.9972 44 1 6.4276 -0.8618 -5.8323 45 1 5.1637 0.0226 -6.7202 46 1 6.9104 1.2360 -7.9960 47 1 8.1737 0.3511 -7.1076 48 1 9.2308 0.1168 -10.6275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = -232.939501 kcal Electronic energy + Delta-G solvation = -30416.332347 eV Core-core repulsion = 26049.717317 eV Total energy + Delta-G solvation = -4366.615030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45732 -41.60130 -40.45771 -38.71094 -37.65465 -37.44625 -35.67547 -34.25547 -33.28014 -33.13364 -32.25243 -30.16992 -27.95042 -26.91432 -25.34766 -24.34268 -23.81923 -22.48676 -22.02442 -21.55801 -20.23714 -19.34489 -18.96852 -18.32302 -18.19283 -17.98561 -17.66604 -17.39204 -16.89872 -16.50779 -16.43366 -16.35235 -15.46341 -15.28449 -15.06580 -14.94498 -14.79918 -14.48858 -14.27603 -14.18438 -13.92361 -13.84466 -13.71567 -13.51697 -13.20593 -12.85045 -12.81655 -12.67191 -12.56094 -12.48684 -12.22468 -12.05628 -11.95179 -11.83825 -11.80256 -11.72105 -11.54946 -11.50934 -11.33409 -11.29490 -10.91871 -10.57877 -9.96301 -8.21186 -6.34708 0.83245 1.10909 1.19825 1.34824 1.43125 1.46398 1.54304 1.62425 2.09155 2.42661 3.12392 3.15656 3.53160 3.65689 3.71925 3.80908 3.88730 3.93491 3.97117 3.97859 3.99613 4.09015 4.15065 4.32712 4.38360 4.39299 4.41669 4.58968 4.69713 4.77111 4.82018 4.82657 4.89779 4.95851 5.06716 5.11165 5.18445 5.19249 5.28682 5.41177 5.44566 5.52422 5.53236 5.78676 5.91466 6.11879 6.63725 6.70107 6.82383 6.87457 7.35123 8.91117 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.002331 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.291754 B =12010.572236 C =13714.856408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.469 3.531 5 O -0.533 6.533 6 C 0.157 3.843 7 H 0.136 0.864 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.139 4.139 11 C 0.096 3.904 12 N -0.597 5.597 13 C 0.511 3.489 14 O -0.538 6.538 15 C 0.048 3.952 16 O -0.349 6.349 17 C 0.471 3.529 18 O -0.531 6.531 19 C -0.095 4.095 20 C 0.042 3.958 21 C -0.548 4.548 22 H 0.073 0.927 23 C -0.001 4.001 24 N -0.933 5.933 25 Si 0.973 3.027 26 H -0.263 1.263 27 H -0.285 1.285 28 H -0.265 1.265 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.114 0.886 46 H -0.004 1.004 47 H -0.006 1.006 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 12.412 27.817 33.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.313 3.687 5 O -0.421 6.421 6 C 0.053 3.947 7 H 0.153 0.847 8 C -0.159 4.159 9 C -0.147 4.147 10 C -0.177 4.177 11 C -0.024 4.024 12 N -0.335 5.335 13 C 0.299 3.701 14 O -0.415 6.415 15 C -0.029 4.029 16 O -0.265 6.265 17 C 0.316 3.684 18 O -0.419 6.419 19 C -0.133 4.133 20 C 0.005 3.995 21 C -0.586 4.586 22 H 0.091 0.909 23 C -0.199 4.199 24 N -0.572 5.572 25 Si 0.796 3.204 26 H -0.188 1.188 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.014 0.986 47 H 0.012 0.988 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.304 11.934 27.703 32.968 hybrid contribution 0.543 -0.899 -0.920 1.396 sum -12.761 11.035 26.783 31.653 Atomic orbital electron populations 1.21798 0.89998 1.04301 1.03765 1.23106 0.97087 0.79464 1.01506 1.86394 1.24084 1.33359 1.84117 1.23494 0.81066 0.92775 0.71362 1.90648 1.61003 1.44289 1.46208 1.21059 0.95303 0.91181 0.87122 0.84691 1.21959 0.98654 1.00417 0.94889 1.21526 0.99670 0.94888 0.98648 1.22007 0.97890 1.04105 0.93681 1.22346 0.95072 0.84348 1.00635 1.48079 1.48356 1.20420 1.16623 1.20430 0.83393 0.82296 0.83990 1.90745 1.42422 1.31791 1.76554 1.22842 1.00660 0.90073 0.89302 1.86607 1.60926 1.46271 1.32735 1.24506 0.76174 0.87753 0.79987 1.90620 1.37364 1.38573 1.75387 1.21544 1.04100 0.94367 0.93262 1.18787 0.93062 0.96213 0.91484 1.21594 1.22817 1.07675 1.06479 0.90852 1.26052 0.94592 0.99047 1.00233 1.70132 1.24977 1.33976 1.28162 0.85388 0.78417 0.78850 0.77704 1.18814 1.20997 1.18978 0.90209 0.91869 0.88472 0.93638 0.91336 0.88074 0.92625 0.88800 0.89298 0.92671 0.87237 0.88646 0.87061 0.85835 0.86865 0.87168 0.86826 0.98580 0.98797 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 10.29 71.98 0.74 -1.32 16 2 C 0.06 1.42 6.19 71.98 0.45 1.86 16 3 O -0.36 -9.13 10.22 -49.62 -0.51 -9.64 16 4 C 0.47 12.65 4.52 71.24 0.32 12.98 16 5 O -0.53 -18.80 14.33 29.79 0.43 -18.37 16 6 C 0.16 2.69 3.34 44.23 0.15 2.84 16 7 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 8 C -0.12 -1.43 5.31 30.67 0.16 -1.27 16 9 C -0.11 -0.59 5.89 30.62 0.18 -0.41 16 10 C -0.14 -0.96 6.08 30.67 0.19 -0.77 16 11 C 0.10 0.91 6.35 86.36 0.55 1.46 16 12 N -0.60 -11.15 2.97 -799.17 -2.38 -13.53 16 13 C 0.51 14.43 7.47 87.66 0.65 15.08 16 14 O -0.54 -20.19 12.26 27.74 0.34 -19.85 16 15 C 0.05 1.32 4.30 71.24 0.31 1.62 16 16 O -0.35 -12.81 9.75 -45.09 -0.44 -13.25 16 17 C 0.47 19.24 7.96 71.24 0.57 19.81 16 18 O -0.53 -23.96 15.73 21.96 0.35 -23.61 16 19 C -0.10 -4.08 5.75 29.85 0.17 -3.91 16 20 C 0.04 2.29 4.26 29.85 0.13 2.42 16 21 C -0.55 -31.24 9.11 25.60 0.23 -31.00 16 22 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 23 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 24 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 25 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.29 8.13 -2.38 -0.02 1.27 16 33 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.98 7.94 -2.38 -0.02 0.96 16 36 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.10 0.91 5.93 -2.39 -0.01 0.89 16 41 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.12 2.77 7.69 -2.39 -0.02 2.75 16 43 H 0.11 2.80 7.93 -2.39 -0.02 2.78 16 44 H 0.11 4.37 8.14 -2.39 -0.02 4.35 16 45 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 46 H 0.00 -0.25 8.10 -2.38 -0.02 -0.27 16 47 H -0.01 -0.39 8.10 -2.39 -0.02 -0.41 16 48 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -86.13 397.38 6.30 -79.83 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.95 Total: 9.98 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 5.26 Total: 19.78 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.09 Total: -71.25 kcal Atomic # 8 Polarization: -84.89 SS G_CDS: 0.17 Total: -84.72 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -86.13 6.30 -79.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.113 kcal (2) G-P(sol) polarization free energy of solvation -86.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds