Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 109.47097 * 2 1 4 4 C 1.34225 * 116.99956 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99729 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00085 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.70429 * 352.90056 * 6 4 3 8 8 C 1.53195 * 109.58639 * 232.54997 * 6 4 3 9 9 C 1.53039 * 109.31365 * 185.57614 * 8 6 4 10 10 C 1.53045 * 109.53689 * 61.36255 * 9 8 6 11 11 C 1.53189 * 109.31366 * 298.63178 * 10 9 8 12 12 N 1.46919 * 109.59165 * 113.25806 * 6 4 3 13 13 C 1.34780 * 120.62916 * 353.41908 * 12 6 4 14 14 O 1.21280 * 119.99887 * 4.08929 * 13 12 6 15 15 C 1.50705 * 120.00323 * 184.08959 * 13 12 6 16 16 O 1.45192 * 109.46879 * 179.97438 * 15 13 12 17 17 C 1.34235 * 116.99585 * 179.97438 * 16 15 13 18 18 O 1.20823 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47078 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47078 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00210 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00208 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99288 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00371 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47102 * 59.99865 * 25 23 21 27 27 H 1.48496 * 109.47033 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46999 * 299.99906 * 25 23 21 29 29 H 1.09004 * 109.47322 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47196 * 60.00266 * 1 2 3 31 31 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.46789 * 239.99871 * 2 1 3 33 33 H 1.08997 * 109.46804 * 119.99827 * 2 1 3 34 34 H 1.09000 * 109.49901 * 305.52269 * 8 6 4 35 35 H 1.09004 * 109.50019 * 65.62622 * 8 6 4 36 36 H 1.09001 * 109.46066 * 301.34239 * 9 8 6 37 37 H 1.08997 * 109.45100 * 181.37778 * 9 8 6 38 38 H 1.09003 * 109.49428 * 178.68304 * 10 9 8 39 39 H 1.08996 * 109.52141 * 58.60475 * 10 9 8 40 40 H 1.08995 * 109.58859 * 294.85066 * 11 10 9 41 41 H 1.09000 * 109.58843 * 174.42198 * 11 10 9 42 42 H 1.09002 * 109.46758 * 300.00104 * 15 13 12 43 43 H 1.08996 * 109.46874 * 59.99854 * 15 13 12 44 44 H 1.09002 * 109.47693 * 300.00316 * 19 17 16 45 45 H 1.09003 * 109.47186 * 60.00241 * 19 17 16 46 46 H 1.08997 * 109.47313 * 300.00016 * 20 19 17 47 47 H 1.09003 * 109.46789 * 60.00152 * 20 19 17 48 48 H 0.97009 * 119.99678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.1201 3.6662 -0.1279 8 6 4.9276 3.0761 -1.1474 9 6 5.6103 4.4429 -1.0587 10 6 6.3686 4.5513 0.2662 11 6 5.3781 4.4294 1.4284 12 7 4.6145 3.1841 1.2702 13 6 4.5522 2.2849 2.2722 14 8 3.9816 1.2280 2.1039 15 6 5.1915 2.5926 3.6018 16 8 4.9878 1.4757 4.5068 17 6 5.5003 1.5911 5.7421 18 8 6.0995 2.5920 6.0565 19 6 5.3281 0.4721 6.7368 20 6 6.0014 0.8547 8.0564 21 6 5.8299 -0.2644 9.0508 22 1 5.2945 -1.1593 8.7697 23 6 6.3563 -0.1460 10.3197 24 7 7.0086 0.9435 10.6618 25 14 6.1443 -1.5336 11.5522 26 1 6.7700 -2.7700 11.0181 27 1 6.7966 -1.1616 12.8333 28 1 4.6971 -1.7720 11.7850 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.6778 2.2892 -1.0699 35 1 4.4071 2.9907 -2.1013 36 1 4.8571 5.2291 -1.1114 37 1 6.3095 4.5539 -1.8875 38 1 6.8738 5.5158 0.3184 39 1 7.1055 3.7507 0.3306 40 1 4.6964 5.2798 1.4182 41 1 5.9230 4.4065 2.3721 42 1 6.2599 2.7573 3.4618 43 1 4.7380 3.4893 4.0241 44 1 4.2658 0.2979 6.9076 45 1 5.7868 -0.4359 6.3452 46 1 7.0638 1.0285 7.8853 47 1 5.5432 1.7629 8.4481 48 1 7.3786 1.0270 11.5546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = -210.062909 kcal Electronic energy + Delta-G solvation = -30425.570373 eV Core-core repulsion = 26059.947347 eV Total energy + Delta-G solvation = -4365.623027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49322 -40.14197 -39.40122 -37.83107 -36.51171 -36.04779 -33.60583 -33.51921 -32.47758 -31.55610 -31.19584 -29.01016 -26.44322 -25.69273 -24.72384 -23.19085 -22.39358 -21.45787 -21.33663 -19.90721 -19.40151 -18.20136 -17.54432 -17.13281 -16.79538 -16.67930 -16.44061 -16.08140 -15.91741 -15.44277 -15.11597 -14.83528 -14.49549 -14.45644 -14.04034 -13.98892 -13.73318 -13.52141 -13.30945 -13.10947 -12.84381 -12.40469 -12.27341 -12.24827 -12.08543 -11.97701 -11.70202 -11.68961 -11.39068 -11.25056 -11.21855 -10.93775 -10.66763 -10.60646 -10.57672 -10.32567 -10.04751 -10.02380 -9.83514 -9.56922 -9.19835 -9.19524 -8.37328 -6.01578 -4.06235 1.78414 2.18364 2.45572 2.57885 2.73505 3.23259 3.33959 3.38214 3.41128 4.03110 4.19353 4.32188 4.35245 4.41981 4.45157 4.58591 4.65749 4.79369 4.83456 4.87277 4.92092 4.95659 5.04184 5.15579 5.18707 5.24429 5.33961 5.34133 5.45564 5.46739 5.53271 5.55160 5.63929 5.76759 5.79944 5.89688 6.12426 6.19960 6.46237 6.53400 6.77335 6.86014 7.65528 7.67125 7.72155 7.87957 7.97445 8.19302 8.36818 9.00378 9.57754 11.09439 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.002338 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.103997 B =11972.330362 C =13650.161330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 O -0.362 6.362 4 C 0.476 3.524 5 O -0.487 6.487 6 C 0.159 3.841 7 H 0.104 0.896 8 C -0.125 4.125 9 C -0.117 4.117 10 C -0.140 4.140 11 C 0.105 3.895 12 N -0.606 5.606 13 C 0.514 3.486 14 O -0.486 6.486 15 C 0.052 3.948 16 O -0.342 6.342 17 C 0.460 3.540 18 O -0.505 6.505 19 C -0.102 4.102 20 C 0.034 3.966 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.890 5.890 25 Si 0.897 3.103 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 9.287 -28.502 31.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.005 4.005 3 O -0.279 6.279 4 C 0.317 3.683 5 O -0.373 6.373 6 C 0.055 3.945 7 H 0.122 0.878 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.178 4.178 11 C -0.016 4.016 12 N -0.346 5.346 13 C 0.302 3.698 14 O -0.359 6.359 15 C -0.025 4.025 16 O -0.259 6.259 17 C 0.304 3.696 18 O -0.392 6.392 19 C -0.139 4.139 20 C -0.003 4.003 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.143 4.143 24 N -0.529 5.529 25 Si 0.724 3.276 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.844 8.762 -28.336 30.680 hybrid contribution 0.083 -0.583 0.716 0.927 sum -7.761 8.179 -27.621 29.833 Atomic orbital electron populations 1.21803 0.92872 1.02902 1.03244 1.22953 0.94842 0.79989 1.02758 1.86383 1.24247 1.32738 1.84531 1.22567 0.81182 0.91505 0.73003 1.90669 1.60127 1.42364 1.44140 1.20723 0.95315 0.92970 0.85501 0.87813 1.21922 0.98485 0.99571 0.96390 1.21507 0.99822 0.96182 0.97895 1.21979 0.98140 1.03460 0.94230 1.21945 0.94162 0.85298 1.00241 1.47992 1.52782 1.21446 1.12394 1.20428 0.80610 0.83533 0.85247 1.90791 1.42154 1.23040 1.79944 1.22490 1.01992 0.90565 0.87453 1.86677 1.72750 1.42462 1.24001 1.24962 0.74575 0.89720 0.80384 1.90632 1.38885 1.31673 1.77988 1.21807 1.04378 0.93859 0.93881 1.19026 0.96334 0.97391 0.87549 1.21122 1.36009 1.02597 0.96983 0.92303 1.25015 0.95048 0.95870 0.98365 1.69982 1.36108 1.26656 1.20115 0.86589 0.78390 0.82277 0.80338 1.20134 1.21255 1.20145 0.91464 0.91800 0.90278 0.91698 0.90660 0.89786 0.89912 0.91132 0.90624 0.89755 0.90844 0.90138 0.88765 0.88279 0.88123 0.88710 0.88697 0.95543 0.95537 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.07 0.76 6.19 37.16 0.23 0.99 16 3 O -0.36 -4.56 10.22 -42.08 -0.43 -4.99 16 4 C 0.48 6.33 4.48 36.00 0.16 6.49 16 5 O -0.49 -8.15 14.31 -26.93 -0.39 -8.53 16 6 C 0.16 1.48 3.35 -68.76 -0.23 1.25 16 7 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.13 -0.87 5.28 -26.61 -0.14 -1.01 16 9 C -0.12 -0.52 5.88 -26.69 -0.16 -0.68 16 10 C -0.14 -0.69 6.08 -26.61 -0.16 -0.85 16 11 C 0.11 0.64 6.33 -3.71 -0.02 0.62 16 12 N -0.61 -6.02 2.97 -166.54 -0.49 -6.52 16 13 C 0.51 7.18 7.65 -10.98 -0.08 7.10 16 14 O -0.49 -8.78 12.08 -27.08 -0.33 -9.10 16 15 C 0.05 0.72 4.33 36.01 0.16 0.88 16 16 O -0.34 -6.18 9.75 -45.92 -0.45 -6.62 16 17 C 0.46 9.22 7.96 36.00 0.29 9.51 16 18 O -0.51 -11.14 15.73 -18.75 -0.29 -11.43 16 19 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 20 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 21 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 22 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 25 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.55 5.96 -51.93 -0.31 0.24 16 42 H 0.10 1.20 7.51 -51.93 -0.39 0.81 16 43 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 44 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 45 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 46 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -37.62 397.24 -8.78 -46.40 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.83 Total: -3.81 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.27 Total: 8.32 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.24 Total: -32.84 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.89 Total: -40.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.62 -8.78 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.662 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds