Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 109.47097 * 2 1 4 4 C 1.34225 * 116.99956 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99729 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00085 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.70429 * 352.90056 * 6 4 3 8 8 C 1.53195 * 109.58639 * 232.54997 * 6 4 3 9 9 C 1.53039 * 109.31365 * 185.57614 * 8 6 4 10 10 C 1.53045 * 109.53689 * 61.36255 * 9 8 6 11 11 C 1.53189 * 109.31366 * 298.63178 * 10 9 8 12 12 N 1.46919 * 109.59165 * 113.25806 * 6 4 3 13 13 C 1.34780 * 120.62916 * 353.41908 * 12 6 4 14 14 O 1.21280 * 119.99887 * 4.08929 * 13 12 6 15 15 C 1.50705 * 120.00323 * 184.08959 * 13 12 6 16 16 O 1.45192 * 109.46879 * 179.97438 * 15 13 12 17 17 C 1.34235 * 116.99585 * 179.97438 * 16 15 13 18 18 O 1.20823 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99876 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47078 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47078 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00210 * 0.02562 * 21 20 19 23 23 C 1.37882 * 120.00208 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99288 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00371 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47102 * 59.99865 * 25 23 21 27 27 H 1.48496 * 109.47033 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46999 * 299.99906 * 25 23 21 29 29 H 1.09004 * 109.47322 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47196 * 60.00266 * 1 2 3 31 31 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.46789 * 239.99871 * 2 1 3 33 33 H 1.08997 * 109.46804 * 119.99827 * 2 1 3 34 34 H 1.09000 * 109.49901 * 305.52269 * 8 6 4 35 35 H 1.09004 * 109.50019 * 65.62622 * 8 6 4 36 36 H 1.09001 * 109.46066 * 301.34239 * 9 8 6 37 37 H 1.08997 * 109.45100 * 181.37778 * 9 8 6 38 38 H 1.09003 * 109.49428 * 178.68304 * 10 9 8 39 39 H 1.08996 * 109.52141 * 58.60475 * 10 9 8 40 40 H 1.08995 * 109.58859 * 294.85066 * 11 10 9 41 41 H 1.09000 * 109.58843 * 174.42198 * 11 10 9 42 42 H 1.09002 * 109.46758 * 300.00104 * 15 13 12 43 43 H 1.08996 * 109.46874 * 59.99854 * 15 13 12 44 44 H 1.09002 * 109.47693 * 300.00316 * 19 17 16 45 45 H 1.09003 * 109.47186 * 60.00241 * 19 17 16 46 46 H 1.08997 * 109.47313 * 300.00016 * 20 19 17 47 47 H 1.09003 * 109.46789 * 60.00152 * 20 19 17 48 48 H 0.97009 * 119.99678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.1201 3.6662 -0.1279 8 6 4.9276 3.0761 -1.1474 9 6 5.6103 4.4429 -1.0587 10 6 6.3686 4.5513 0.2662 11 6 5.3781 4.4294 1.4284 12 7 4.6145 3.1841 1.2702 13 6 4.5522 2.2849 2.2722 14 8 3.9816 1.2280 2.1039 15 6 5.1915 2.5926 3.6018 16 8 4.9878 1.4757 4.5068 17 6 5.5003 1.5911 5.7421 18 8 6.0995 2.5920 6.0565 19 6 5.3281 0.4721 6.7368 20 6 6.0014 0.8547 8.0564 21 6 5.8299 -0.2644 9.0508 22 1 5.2945 -1.1593 8.7697 23 6 6.3563 -0.1460 10.3197 24 7 7.0086 0.9435 10.6618 25 14 6.1443 -1.5336 11.5522 26 1 6.7700 -2.7700 11.0181 27 1 6.7966 -1.1616 12.8333 28 1 4.6971 -1.7720 11.7850 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.6778 2.2892 -1.0699 35 1 4.4071 2.9907 -2.1013 36 1 4.8571 5.2291 -1.1114 37 1 6.3095 4.5539 -1.8875 38 1 6.8738 5.5158 0.3184 39 1 7.1055 3.7507 0.3306 40 1 4.6964 5.2798 1.4182 41 1 5.9230 4.4065 2.3721 42 1 6.2599 2.7573 3.4618 43 1 4.7380 3.4893 4.0241 44 1 4.2658 0.2979 6.9076 45 1 5.7868 -0.4359 6.3452 46 1 7.0638 1.0285 7.8853 47 1 5.5432 1.7629 8.4481 48 1 7.3786 1.0270 11.5546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -232.422172 kcal Electronic energy + Delta-G solvation = -30426.539944 eV Core-core repulsion = 26059.947347 eV Total energy + Delta-G solvation = -4366.592597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44850 -41.59730 -40.45105 -38.71396 -37.63801 -37.44339 -35.67326 -34.26555 -33.27592 -33.12548 -32.25029 -30.16531 -27.94824 -26.90567 -25.36127 -24.33627 -23.80808 -22.47931 -22.03392 -21.55328 -20.23349 -19.34500 -18.96142 -18.31163 -18.17598 -17.98235 -17.65174 -17.37306 -16.90206 -16.51622 -16.44261 -16.37644 -15.48186 -15.26398 -15.05705 -14.92502 -14.76383 -14.47563 -14.27395 -14.19077 -13.93499 -13.82707 -13.74961 -13.50816 -13.20280 -12.86798 -12.81812 -12.65765 -12.55998 -12.47817 -12.22523 -12.05182 -11.94762 -11.82724 -11.79999 -11.72725 -11.54709 -11.50448 -11.33146 -11.28279 -10.87516 -10.57731 -9.97405 -8.21155 -6.34545 0.83156 1.10782 1.17006 1.36667 1.43373 1.46434 1.54369 1.65699 2.10284 2.42772 3.12505 3.14491 3.53590 3.67126 3.71156 3.81334 3.88880 3.93543 3.97519 3.98008 4.00191 4.09412 4.15244 4.33059 4.38611 4.39640 4.41727 4.59164 4.69828 4.77021 4.82152 4.82904 4.89817 4.95849 5.07028 5.11258 5.18492 5.18912 5.28392 5.41033 5.44816 5.53554 5.53931 5.78871 5.90965 6.12091 6.63923 6.70538 6.82644 6.89614 7.35240 8.91149 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.002338 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.103997 B =11972.330362 C =13650.161330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 O -0.365 6.365 4 C 0.469 3.531 5 O -0.530 6.530 6 C 0.156 3.844 7 H 0.137 0.863 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.138 4.138 11 C 0.095 3.905 12 N -0.596 5.596 13 C 0.509 3.491 14 O -0.537 6.537 15 C 0.048 3.952 16 O -0.349 6.349 17 C 0.471 3.529 18 O -0.530 6.530 19 C -0.096 4.096 20 C 0.042 3.958 21 C -0.548 4.548 22 H 0.073 0.927 23 C -0.001 4.001 24 N -0.933 5.933 25 Si 0.973 3.027 26 H -0.265 1.265 27 H -0.285 1.285 28 H -0.264 1.264 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.111 0.889 46 H -0.006 1.006 47 H -0.004 1.004 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 10.307 -29.828 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.011 4.011 3 O -0.282 6.282 4 C 0.313 3.687 5 O -0.419 6.419 6 C 0.053 3.947 7 H 0.154 0.846 8 C -0.159 4.159 9 C -0.148 4.148 10 C -0.176 4.176 11 C -0.025 4.025 12 N -0.333 5.333 13 C 0.297 3.703 14 O -0.415 6.415 15 C -0.029 4.029 16 O -0.266 6.266 17 C 0.316 3.684 18 O -0.419 6.419 19 C -0.133 4.133 20 C 0.004 3.996 21 C -0.586 4.586 22 H 0.091 0.909 23 C -0.199 4.199 24 N -0.572 5.572 25 Si 0.796 3.204 26 H -0.190 1.190 27 H -0.210 1.210 28 H -0.188 1.188 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.012 0.988 47 H 0.014 0.986 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.877 9.829 -29.716 32.534 hybrid contribution 0.404 -0.830 1.004 1.364 sum -8.473 8.999 -28.712 31.259 Atomic orbital electron populations 1.21799 0.90087 1.04286 1.03717 1.23090 0.97017 0.79497 1.01495 1.86395 1.24221 1.33347 1.84198 1.23454 0.81012 0.92798 0.71483 1.90636 1.60972 1.44196 1.46077 1.21100 0.96661 0.91138 0.85828 0.84559 1.21951 0.97433 1.00426 0.96104 1.21531 1.00391 0.94871 0.97961 1.22001 0.97536 1.04123 0.93960 1.22353 0.94847 0.84228 1.01029 1.48107 1.52069 1.21648 1.11519 1.20504 0.80313 0.83548 0.85963 1.90782 1.44617 1.25179 1.80884 1.22851 1.03416 0.89799 0.86820 1.86607 1.72114 1.44367 1.23465 1.24492 0.74120 0.88835 0.80943 1.90620 1.40117 1.32506 1.78669 1.21544 1.04976 0.94811 0.91955 1.18787 0.94549 0.95999 0.90222 1.21596 1.35966 1.03368 0.97639 0.90862 1.26051 0.94498 0.98629 1.00742 1.70135 1.37245 1.29052 1.20803 0.85391 0.78921 0.78775 0.77291 1.18964 1.21004 1.18841 0.91963 0.90213 0.88474 0.91300 0.93664 0.92691 0.88231 0.88746 0.89358 0.87190 0.92766 0.86999 0.88618 0.86663 0.85824 0.86870 0.87137 0.98762 0.98591 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.06 1.45 6.19 71.98 0.45 1.89 16 3 O -0.36 -9.27 10.22 -48.66 -0.50 -9.77 16 4 C 0.47 12.67 4.48 71.23 0.32 12.99 16 5 O -0.53 -18.69 14.31 29.80 0.43 -18.27 16 6 C 0.16 2.67 3.35 44.23 0.15 2.82 16 7 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 8 C -0.12 -1.47 5.28 30.67 0.16 -1.31 16 9 C -0.11 -0.61 5.88 30.62 0.18 -0.43 16 10 C -0.14 -0.96 6.08 30.67 0.19 -0.77 16 11 C 0.10 0.89 6.33 86.36 0.55 1.44 16 12 N -0.60 -11.01 2.97 -799.19 -2.38 -13.39 16 13 C 0.51 14.18 7.65 87.66 0.67 14.85 16 14 O -0.54 -20.09 12.08 28.18 0.34 -19.75 16 15 C 0.05 1.28 4.33 71.24 0.31 1.59 16 16 O -0.35 -12.64 9.75 -45.11 -0.44 -13.08 16 17 C 0.47 19.06 7.96 71.23 0.57 19.63 16 18 O -0.53 -23.73 15.73 21.97 0.35 -23.38 16 19 C -0.10 -4.06 5.75 29.85 0.17 -3.88 16 20 C 0.04 2.28 4.26 29.85 0.13 2.41 16 21 C -0.55 -31.15 9.11 25.60 0.23 -30.91 16 22 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 23 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 24 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 25 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 28 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.05 1.01 7.84 -2.39 -0.02 0.99 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.09 0.33 8.14 -2.39 -0.02 0.32 16 38 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.10 0.89 5.96 -2.39 -0.01 0.88 16 42 H 0.12 2.72 7.51 -2.39 -0.02 2.70 16 43 H 0.12 2.74 8.08 -2.39 -0.02 2.73 16 44 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 45 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 46 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 47 H 0.00 -0.26 8.10 -2.39 -0.02 -0.28 16 48 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -85.99 397.24 6.33 -79.67 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.95 Total: 9.95 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 5.27 Total: 19.32 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -2.09 Total: -70.97 kcal Atomic # 8 Polarization: -84.43 SS G_CDS: 0.18 Total: -84.26 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -85.99 6.33 -79.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.757 kcal (2) G-P(sol) polarization free energy of solvation -85.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds