Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47015 * 120.00082 * 9 7 5 12 12 H 1.48507 * 109.47126 * 239.99903 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 O 1.45200 * 109.47207 * 180.28017 * 15 13 3 17 17 C 1.34231 * 117.00542 * 180.02562 * 16 15 13 18 18 O 1.20828 * 119.99365 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00499 * 179.97438 * 17 16 15 20 20 H 1.08995 * 109.46906 * 59.99444 * 19 17 16 21 21 C 1.53002 * 109.46838 * 299.99554 * 19 17 16 22 22 C 1.52997 * 109.46767 * 179.97438 * 21 19 17 23 23 C 1.52997 * 109.47293 * 60.00720 * 22 21 19 24 24 C 1.53008 * 109.46770 * 299.99651 * 23 22 21 25 25 H 1.09000 * 109.47038 * 180.02562 * 24 23 22 26 26 C 1.50699 * 109.46852 * 299.99773 * 24 23 22 27 27 O 1.20825 * 119.99794 * 120.00087 * 26 24 23 28 28 O 1.34228 * 120.00409 * 299.99978 * 26 24 23 29 29 C 1.52997 * 109.47252 * 59.99926 * 24 23 22 30 30 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 31 31 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 33 33 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 34 34 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 35 35 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 36 36 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 37 37 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 38 38 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 39 39 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 40 40 H 1.08995 * 109.47291 * 300.00217 * 21 19 17 41 41 H 1.09006 * 109.47115 * 60.00306 * 21 19 17 42 42 H 1.09001 * 109.47144 * 180.02562 * 22 21 19 43 43 H 1.08995 * 109.47608 * 300.00287 * 22 21 19 44 44 H 1.09001 * 109.47350 * 59.98882 * 23 22 21 45 45 H 1.08997 * 109.47550 * 180.02562 * 23 22 21 46 46 H 0.96693 * 117.00241 * 180.02562 * 28 26 24 47 47 H 1.09001 * 109.47468 * 180.02562 * 29 24 23 48 48 H 1.09003 * 109.47138 * 59.99708 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.6016 1.2425 -2.4156 11 1 5.9217 1.4170 -4.7371 12 1 6.6206 3.3981 -3.5255 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 8 2.2953 2.1997 3.5759 17 6 2.1191 1.7179 4.8163 18 8 1.7192 0.5888 4.9746 19 6 2.4202 2.5852 6.0114 20 1 1.7909 3.4747 5.9825 21 6 3.8924 3.0007 5.9820 22 6 4.1979 3.8817 7.1950 23 6 3.9147 3.0986 8.4784 24 6 2.4425 2.6829 8.5078 25 1 2.2405 2.1253 9.4224 26 6 1.5724 3.9127 8.4675 27 8 0.7884 4.0686 7.5615 28 8 1.6685 4.8350 9.4380 29 6 2.1369 1.8019 7.2949 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0283 36 1 2.0957 3.1410 -1.1384 37 1 3.6753 3.5162 -4.4439 38 1 0.9376 1.0142 2.5258 39 1 2.6158 0.4209 2.5344 40 1 4.5217 2.1112 6.0108 41 1 4.0941 3.5591 5.0678 42 1 5.2466 4.1782 7.1738 43 1 3.5686 4.7712 7.1658 44 1 4.5439 2.2090 8.5076 45 1 4.1319 3.7263 9.3426 46 1 1.0897 5.6065 9.3693 47 1 1.0880 1.5062 7.3155 48 1 2.7662 0.9124 7.3240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829693155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = -228.418664 kcal Electronic energy + Delta-G solvation = -30541.380019 eV Core-core repulsion = 26174.961027 eV Total energy + Delta-G solvation = -4366.418992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43962 -40.40641 -39.00400 -37.93604 -36.41087 -36.27454 -35.27778 -32.84349 -32.09793 -31.31912 -30.16402 -29.07675 -26.59040 -24.91008 -24.34578 -23.06572 -22.52544 -22.21274 -20.80382 -20.00284 -18.66577 -18.30528 -17.79253 -16.95776 -16.61346 -16.48278 -16.36577 -16.15883 -15.74058 -15.50376 -14.97019 -14.71397 -14.25946 -14.21550 -13.93401 -13.53901 -13.38441 -13.25574 -12.92288 -12.74756 -12.69160 -12.48508 -12.39470 -12.07261 -12.04025 -12.02728 -11.62748 -11.47901 -11.34030 -11.23341 -11.09541 -10.92439 -10.85064 -10.60450 -10.59692 -10.51447 -10.41631 -10.22108 -10.14571 -9.63975 -8.97050 -8.44995 -7.73834 -6.05689 -4.10463 1.82796 2.22148 2.51211 2.64386 3.27529 3.29468 3.37291 3.41710 3.85117 4.17228 4.21210 4.36302 4.43914 4.60190 4.67839 4.85266 4.86049 4.91206 5.00769 5.05969 5.11576 5.20288 5.24859 5.29028 5.34280 5.39125 5.49731 5.58016 5.60298 5.63794 5.70800 5.74819 5.80564 5.92947 5.99547 6.01588 6.20139 6.21843 6.44381 6.46827 7.01035 7.40745 7.48518 7.52546 7.76695 7.90719 8.20794 8.31332 8.85813 9.00757 9.54578 11.02543 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.002412 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.442738 B =11606.599113 C =12423.381951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.327 6.327 17 C 0.469 3.531 18 O -0.515 6.515 19 C -0.092 4.092 20 H 0.131 0.869 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.078 4.078 25 H 0.116 0.884 26 C 0.481 3.519 27 O -0.507 6.507 28 O -0.516 6.516 29 C -0.089 4.089 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.410 0.590 47 H 0.082 0.918 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 -2.962 26.381 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.241 6.241 17 C 0.312 3.688 18 O -0.404 6.404 19 C -0.110 4.110 20 H 0.149 0.851 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.097 4.097 25 H 0.134 0.866 26 C 0.324 3.676 27 O -0.395 6.395 28 O -0.328 6.328 29 C -0.127 4.127 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.269 0.731 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.674 -2.875 25.967 26.262 hybrid contribution 0.348 0.114 -0.571 0.678 sum -2.326 -2.762 25.396 25.651 Atomic orbital electron populations 1.22235 0.96551 1.01677 1.02426 1.21501 0.93750 0.83972 1.02983 1.48206 1.63870 1.13408 1.07147 1.19336 0.96483 0.93726 0.77602 1.21464 0.96841 1.31978 1.06271 0.92358 1.24937 0.97922 0.94887 0.96372 1.69941 1.35627 1.33417 1.14340 0.86429 0.84555 0.78068 0.78289 1.19795 1.20959 1.20851 1.19721 0.79690 0.87137 0.84304 1.90713 1.44497 1.17475 1.86747 1.22959 1.02673 0.92653 0.84591 1.86570 1.78346 1.44862 1.14354 1.23718 0.73779 0.86690 0.84614 1.90632 1.42854 1.20136 1.86774 1.21352 1.00297 0.99985 0.89395 0.85127 1.21605 0.93089 1.00812 0.99931 1.21604 1.02617 0.98174 0.93593 1.21628 0.92771 1.01713 0.99047 1.21139 0.95323 0.91505 1.01750 0.86616 1.23541 0.81348 0.84227 0.78509 1.90701 1.36883 1.77120 1.34771 1.84522 1.63959 1.34086 1.50277 1.21349 1.03987 0.97150 0.90173 0.91784 0.91906 0.93131 0.89434 0.91781 0.94632 0.93706 0.92731 0.88839 0.88781 0.90989 0.89525 0.90323 0.91914 0.89802 0.90170 0.73091 0.89926 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.67 2.46 -175.06 -0.43 -13.10 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.51 11.01 7.75 -10.98 -0.09 10.93 16 14 O -0.52 -13.63 16.08 -14.11 -0.23 -13.85 16 15 C 0.05 0.83 4.50 36.01 0.16 0.99 16 16 O -0.33 -5.72 9.66 -45.91 -0.44 -6.16 16 17 C 0.47 6.99 7.26 36.00 0.26 7.25 16 18 O -0.52 -8.23 15.73 -18.75 -0.30 -8.53 16 19 C -0.09 -1.06 2.33 -91.77 -0.21 -1.27 16 20 H 0.13 1.68 5.52 -51.93 -0.29 1.39 16 21 C -0.12 -1.16 5.14 -26.73 -0.14 -1.29 16 22 C -0.12 -0.91 5.70 -26.73 -0.15 -1.06 16 23 C -0.11 -0.64 5.39 -26.73 -0.14 -0.78 16 24 C -0.08 -0.51 3.11 -91.77 -0.29 -0.80 16 25 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 26 C 0.48 3.96 6.11 36.01 0.22 4.18 16 27 O -0.51 -5.93 14.42 -18.75 -0.27 -6.20 16 28 O -0.52 -3.01 13.33 -39.25 -0.52 -3.54 16 29 C -0.09 -0.80 3.66 -26.73 -0.10 -0.90 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.67 7.20 -51.93 -0.37 0.30 16 33 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 34 H 0.06 0.88 6.45 -51.93 -0.33 0.54 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.41 7.15 -51.92 -0.37 1.04 16 39 H 0.09 1.44 7.40 -51.93 -0.38 1.05 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 7.22 -51.93 -0.37 0.14 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 46 H 0.41 0.95 9.10 45.56 0.41 1.37 16 47 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 48 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -36.86 393.89 -7.80 -44.66 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.70 Total: 0.03 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.56 Total: 9.74 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.31 Total: -38.94 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -1.76 Total: -38.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.86 -7.80 -44.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.760 kcal (2) G-P(sol) polarization free energy of solvation -36.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds