Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47015 * 120.00082 * 9 7 5 12 12 H 1.48507 * 109.47126 * 239.99903 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 O 1.45200 * 109.47207 * 180.28017 * 15 13 3 17 17 C 1.34231 * 117.00542 * 180.02562 * 16 15 13 18 18 O 1.20828 * 119.99365 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00499 * 179.97438 * 17 16 15 20 20 H 1.08995 * 109.46906 * 59.99444 * 19 17 16 21 21 C 1.53002 * 109.46838 * 299.99554 * 19 17 16 22 22 C 1.52997 * 109.46767 * 179.97438 * 21 19 17 23 23 C 1.52997 * 109.47293 * 60.00720 * 22 21 19 24 24 C 1.53008 * 109.46770 * 299.99651 * 23 22 21 25 25 H 1.09000 * 109.47038 * 180.02562 * 24 23 22 26 26 C 1.50699 * 109.46852 * 299.99773 * 24 23 22 27 27 O 1.20825 * 119.99794 * 120.00087 * 26 24 23 28 28 O 1.34228 * 120.00409 * 299.99978 * 26 24 23 29 29 C 1.52997 * 109.47252 * 59.99926 * 24 23 22 30 30 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 31 31 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 33 33 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 34 34 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 35 35 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 36 36 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 37 37 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 38 38 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 39 39 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 40 40 H 1.08995 * 109.47291 * 300.00217 * 21 19 17 41 41 H 1.09006 * 109.47115 * 60.00306 * 21 19 17 42 42 H 1.09001 * 109.47144 * 180.02562 * 22 21 19 43 43 H 1.08995 * 109.47608 * 300.00287 * 22 21 19 44 44 H 1.09001 * 109.47350 * 59.98882 * 23 22 21 45 45 H 1.08997 * 109.47550 * 180.02562 * 23 22 21 46 46 H 0.96693 * 117.00241 * 180.02562 * 28 26 24 47 47 H 1.09001 * 109.47468 * 180.02562 * 29 24 23 48 48 H 1.09003 * 109.47138 * 59.99708 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.6016 1.2425 -2.4156 11 1 5.9217 1.4170 -4.7371 12 1 6.6206 3.3981 -3.5255 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 8 2.2953 2.1997 3.5759 17 6 2.1191 1.7179 4.8163 18 8 1.7192 0.5888 4.9746 19 6 2.4202 2.5852 6.0114 20 1 1.7909 3.4747 5.9825 21 6 3.8924 3.0007 5.9820 22 6 4.1979 3.8817 7.1950 23 6 3.9147 3.0986 8.4784 24 6 2.4425 2.6829 8.5078 25 1 2.2405 2.1253 9.4224 26 6 1.5724 3.9127 8.4675 27 8 0.7884 4.0686 7.5615 28 8 1.6685 4.8350 9.4380 29 6 2.1369 1.8019 7.2949 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0283 36 1 2.0957 3.1410 -1.1384 37 1 3.6753 3.5162 -4.4439 38 1 0.9376 1.0142 2.5258 39 1 2.6158 0.4209 2.5344 40 1 4.5217 2.1112 6.0108 41 1 4.0941 3.5591 5.0678 42 1 5.2466 4.1782 7.1738 43 1 3.5686 4.7712 7.1658 44 1 4.5439 2.2090 8.5076 45 1 4.1319 3.7263 9.3426 46 1 1.0897 5.6065 9.3693 47 1 1.0880 1.5062 7.3155 48 1 2.7662 0.9124 7.3240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829693155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = -252.089646 kcal Electronic energy + Delta-G solvation = -30542.406470 eV Core-core repulsion = 26174.961027 eV Total energy + Delta-G solvation = -4367.445443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.27434 -41.48146 -40.59735 -38.71272 -37.56399 -37.01646 -36.99489 -34.95495 -32.85891 -31.98693 -31.75183 -30.60360 -28.44101 -25.51792 -25.46627 -24.70228 -24.06771 -22.85690 -21.83313 -20.68294 -20.29889 -19.00431 -18.88427 -18.65500 -18.17305 -17.78830 -17.54890 -17.15052 -17.03644 -16.54171 -16.33328 -15.99993 -15.81573 -15.05442 -14.89175 -14.67546 -14.57833 -14.50083 -14.20526 -13.85567 -13.68316 -13.64556 -13.43296 -13.32529 -13.30246 -13.07988 -13.03376 -12.71024 -12.66773 -12.53163 -12.24955 -12.19077 -12.07995 -12.01583 -11.86804 -11.80818 -11.70731 -11.28321 -11.22111 -11.06517 -10.75414 -10.66454 -9.57231 -8.24566 -6.39235 1.03106 1.23836 1.25588 1.36169 1.38747 1.50417 1.58854 2.16194 2.30200 2.43074 3.05522 3.35779 3.42402 3.56453 3.69551 3.79158 3.91686 3.93124 4.01900 4.12016 4.14580 4.21340 4.34945 4.35259 4.45902 4.56063 4.59704 4.65568 4.85634 4.89637 4.91602 4.95218 5.00179 5.06240 5.10530 5.15559 5.18022 5.24030 5.29652 5.33250 5.36614 5.52497 5.70121 5.77802 6.02333 6.50265 6.62760 6.69915 7.02357 7.18781 7.34670 8.83305 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.002412 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.442738 B =11606.599113 C =12423.381951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.060 3.940 16 O -0.350 6.350 17 C 0.467 3.533 18 O -0.524 6.524 19 C -0.089 4.089 20 H 0.115 0.885 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.107 4.107 24 C -0.074 4.074 25 H 0.149 0.851 26 C 0.483 3.517 27 O -0.551 6.551 28 O -0.509 6.509 29 C -0.085 4.085 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.030 0.970 36 H -0.002 1.002 37 H 0.268 0.732 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.425 0.575 47 H 0.068 0.932 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -5.038 28.845 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.017 4.017 16 O -0.266 6.266 17 C 0.311 3.689 18 O -0.414 6.414 19 C -0.108 4.108 20 H 0.133 0.867 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.093 4.093 25 H 0.166 0.834 26 C 0.327 3.673 27 O -0.442 6.442 28 O -0.322 6.322 29 C -0.123 4.123 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.286 0.714 47 H 0.087 0.913 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.540 -4.992 28.467 28.942 hybrid contribution -0.081 0.796 -1.315 1.540 sum -1.622 -4.195 27.152 27.522 Atomic orbital electron populations 1.22180 0.94408 1.03821 1.01743 1.21867 0.95501 0.80962 1.04448 1.48212 1.63563 1.15289 1.05663 1.18810 0.95748 0.91611 0.79728 1.21715 0.97699 1.32184 1.06587 0.92718 1.25872 1.02521 0.94394 0.96378 1.70057 1.37764 1.34130 1.14834 0.85336 0.78825 0.78022 0.78428 1.19043 1.19322 1.20775 1.20541 0.78350 0.86631 0.85846 1.90676 1.47174 1.20152 1.87755 1.22826 1.04524 0.92162 0.82149 1.86590 1.78890 1.45713 1.15395 1.24421 0.73104 0.87043 0.84285 1.90610 1.43379 1.20675 1.86701 1.21495 1.01020 0.99218 0.89097 0.86697 1.21605 0.92116 1.01414 1.00123 1.21612 1.03150 0.97489 0.93537 1.21647 0.92061 1.02519 0.98218 1.21228 0.95649 0.90674 1.01742 0.83362 1.23923 0.80681 0.84758 0.77931 1.90698 1.38888 1.78123 1.36486 1.84485 1.64124 1.34414 1.49183 1.21354 1.03442 0.97752 0.89722 0.93645 0.88260 0.92684 0.89806 0.88448 0.95196 0.98358 0.92336 0.86451 0.86345 0.89845 0.92250 0.89009 0.93144 0.87826 0.88418 0.71390 0.91296 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.24 71.98 0.74 -3.47 16 2 C 0.09 2.92 5.93 86.38 0.51 3.44 16 3 N -0.59 -25.98 2.46 -826.15 -2.03 -28.01 16 4 C 0.26 14.35 5.16 85.64 0.44 14.79 16 5 C -0.54 -31.62 9.39 25.60 0.24 -31.37 16 6 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 9 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 C 0.50 22.28 7.75 87.66 0.68 22.96 16 14 O -0.58 -32.08 16.08 15.76 0.25 -31.82 16 15 C 0.06 2.01 4.50 71.24 0.32 2.33 16 16 O -0.35 -12.45 9.66 -45.07 -0.44 -12.89 16 17 C 0.47 13.82 7.26 71.24 0.52 14.34 16 18 O -0.52 -16.10 15.73 21.96 0.35 -15.75 16 19 C -0.09 -2.05 2.33 -11.54 -0.03 -2.08 16 20 H 0.12 3.08 5.52 -2.39 -0.01 3.07 16 21 C -0.11 -2.23 5.14 30.59 0.16 -2.07 16 22 C -0.12 -1.60 5.70 30.59 0.17 -1.43 16 23 C -0.11 -0.84 5.39 30.60 0.16 -0.67 16 24 C -0.07 -0.78 3.11 -11.54 -0.04 -0.81 16 25 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 26 C 0.48 7.29 6.11 71.24 0.44 7.73 16 27 O -0.55 -13.00 14.42 21.97 0.32 -12.68 16 28 O -0.51 -4.92 13.33 -51.40 -0.68 -5.61 16 29 C -0.09 -1.40 3.66 30.59 0.11 -1.29 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.37 7.20 -2.39 -0.02 1.35 16 33 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 34 H 0.10 2.39 6.45 -2.39 -0.02 2.38 16 35 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 36 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.12 3.36 7.15 -2.38 -0.02 3.34 16 39 H 0.12 3.38 7.40 -2.39 -0.02 3.36 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.46 8.11 -2.38 -0.02 1.44 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 0.80 7.22 -2.39 -0.02 0.78 16 44 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.51 8.11 -2.39 -0.02 0.49 16 46 H 0.42 1.37 9.10 -74.06 -0.67 0.69 16 47 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 48 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -84.55 393.89 5.27 -79.27 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.31 Total: 13.26 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 4.89 Total: 23.28 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.74 Total: -84.27 kcal Atomic # 8 Polarization: -78.54 SS G_CDS: -0.20 Total: -78.74 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -84.55 5.27 -79.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.817 kcal (2) G-P(sol) polarization free energy of solvation -84.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds