Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45202 * 109.47062 * 2 1 4 4 C 1.34228 * 117.00221 * 175.08247 * 3 2 1 5 5 O 1.20838 * 119.99738 * 5.11311 * 4 3 2 6 6 C 1.50699 * 120.00375 * 185.11139 * 4 3 2 7 7 C 1.50696 * 110.01592 * 297.66212 * 6 4 3 8 8 O 1.21296 * 119.99983 * 121.35577 * 7 6 4 9 9 N 1.34773 * 120.00006 * 301.35240 * 7 6 4 10 10 C 1.37098 * 120.00048 * 5.58850 * 9 7 6 11 11 H 1.07993 * 120.00223 * 314.71006 * 10 9 7 12 12 C 1.38953 * 119.99739 * 134.70728 * 10 9 7 13 13 N 1.31414 * 119.99998 * 1.92276 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 181.91776 * 12 10 9 15 15 H 1.48505 * 109.46776 * 65.02750 * 14 12 10 16 16 H 1.48500 * 109.47322 * 185.02794 * 14 12 10 17 17 H 1.48494 * 109.47208 * 305.02715 * 14 12 10 18 18 C 1.46505 * 119.99842 * 185.59244 * 9 7 6 19 19 C 1.53000 * 109.46998 * 94.07640 * 18 9 7 20 20 C 1.50706 * 109.46889 * 179.97438 * 19 18 9 21 21 O 1.20823 * 120.00163 * 0.02562 * 20 19 18 22 22 O 1.34232 * 119.99793 * 179.97438 * 20 19 18 23 23 C 1.45200 * 116.99920 * 179.97438 * 22 20 19 24 24 C 1.54262 * 110.03040 * 59.10354 * 6 4 3 25 25 C 1.54890 * 104.19643 * 142.89263 * 24 6 4 26 26 C 1.54882 * 102.74860 * 322.06148 * 25 24 6 27 27 C 1.53873 * 110.03134 * 176.27041 * 6 4 3 28 28 H 1.08996 * 109.47662 * 304.98122 * 1 2 3 29 29 H 1.09005 * 109.47367 * 64.97626 * 1 2 3 30 30 H 1.08999 * 109.47183 * 184.97335 * 1 2 3 31 31 H 1.09001 * 109.47511 * 240.00191 * 2 1 3 32 32 H 1.09003 * 109.47365 * 119.99675 * 2 1 3 33 33 H 0.96998 * 119.99904 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.46972 * 214.07185 * 18 9 7 35 35 H 1.08990 * 109.47220 * 334.07177 * 18 9 7 36 36 H 1.09004 * 109.46888 * 299.99597 * 19 18 9 37 37 H 1.09002 * 109.47700 * 60.00158 * 19 18 9 38 38 H 1.08995 * 109.47221 * 179.97438 * 23 22 20 39 39 H 1.08994 * 109.47471 * 300.00764 * 23 22 20 40 40 H 1.09003 * 109.46702 * 60.00443 * 23 22 20 41 41 H 1.09008 * 110.48887 * 24.21896 * 24 6 4 42 42 H 1.09001 * 110.48890 * 261.57597 * 24 6 4 43 43 H 1.08997 * 110.75965 * 203.73783 * 25 24 6 44 44 H 1.09000 * 110.75361 * 80.37543 * 25 24 6 45 45 H 1.09001 * 110.48920 * 156.62121 * 26 25 24 46 46 H 1.09002 * 110.48218 * 279.12344 * 26 25 24 47 47 H 1.08998 * 110.03131 * 121.43474 * 27 6 4 48 48 H 1.08997 * 110.03647 * 359.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3405 1.5464 0.1025 5 8 4.0800 0.5908 0.0963 6 6 3.9075 2.9372 0.2253 7 6 3.5807 3.7383 -1.0085 8 8 2.9484 4.7690 -0.9126 9 7 3.9910 3.3095 -2.2186 10 6 4.6048 2.0898 -2.3418 11 1 5.3764 1.8006 -1.6438 12 6 4.2339 1.2257 -3.3648 13 7 3.3218 1.5927 -4.2367 14 14 5.0321 -0.4577 -3.5008 15 1 4.6655 -1.2764 -2.3172 16 1 4.5574 -1.1324 -4.7355 17 1 6.5078 -0.3027 -3.5576 18 6 3.7812 4.1469 -3.4023 19 6 5.0323 4.9892 -3.6594 20 6 4.8167 5.8501 -4.8774 21 8 3.7696 5.7959 -5.4778 22 8 5.7875 6.6779 -5.2946 23 6 5.5106 7.4767 -6.4750 24 6 3.3329 3.6335 1.4762 25 6 4.5198 4.4608 2.0293 26 6 5.7309 3.5270 1.7844 27 6 5.4322 2.8694 0.4213 28 1 -0.3634 0.5891 0.8419 29 1 -0.3634 0.4347 -0.9312 30 1 -0.3633 -1.0238 0.0891 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0632 0.9896 -4.9510 34 1 3.5867 3.5119 -4.2667 35 1 2.9283 4.8047 -3.2354 36 1 5.2268 5.6241 -2.7950 37 1 5.8853 4.3314 -3.8263 38 1 6.3751 8.1001 -6.7029 39 1 5.3041 6.8186 -7.3189 40 1 4.6443 8.1116 -6.2889 41 1 3.0087 2.8946 2.2091 42 1 2.5060 4.2887 1.2022 43 1 4.3917 4.6562 3.0940 44 1 4.6324 5.3928 1.4754 45 1 6.6542 4.1043 1.7353 46 1 5.7954 2.7723 2.5684 47 1 5.9357 3.4167 -0.3756 48 1 5.7620 1.8306 0.4280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871348387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = -228.004575 kcal Electronic energy + Delta-G solvation = -32676.611598 eV Core-core repulsion = 28310.210563 eV Total energy + Delta-G solvation = -4366.401036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20497 -41.49522 -40.35916 -38.32945 -37.65132 -37.33234 -36.69070 -33.84834 -32.87190 -32.51270 -30.53567 -29.61122 -28.62462 -27.00050 -25.30718 -24.77174 -23.05034 -22.43379 -21.54850 -21.45757 -20.52027 -19.56792 -18.88008 -18.11902 -17.83141 -17.64337 -17.55031 -17.33089 -16.98035 -16.41509 -16.27510 -15.67973 -15.44975 -15.10590 -14.94100 -14.89704 -14.31706 -14.26072 -14.15617 -13.80780 -13.75208 -13.63494 -13.09523 -13.05159 -12.98297 -12.91470 -12.73735 -12.67169 -12.53758 -12.31437 -12.18817 -12.13231 -11.95834 -11.87679 -11.83566 -11.76842 -11.58541 -11.46884 -11.43044 -11.13817 -11.02515 -10.42787 -9.51719 -8.25590 -6.24493 1.14587 1.25478 1.36047 1.41588 1.46907 1.60445 1.76701 2.04087 2.27508 2.83245 3.02651 3.54811 3.60784 3.82113 3.87660 3.98650 4.07148 4.11983 4.20571 4.29252 4.31499 4.31844 4.32585 4.42094 4.50630 4.51959 4.58095 4.60995 4.69923 4.79978 4.82618 4.89721 4.99303 5.04310 5.09874 5.12068 5.16861 5.23194 5.29319 5.37253 5.39011 5.50352 5.59456 5.68360 6.00270 6.38158 6.71426 6.88675 7.06953 7.43727 7.86858 8.67757 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.004979 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.887379 B = 5622.245705 C = 6821.114007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 O -0.368 6.368 4 C 0.499 3.501 5 O -0.517 6.517 6 C -0.058 4.058 7 C 0.488 3.512 8 O -0.607 6.607 9 N -0.443 5.443 10 C -0.348 4.348 11 H 0.106 0.894 12 C 0.016 3.984 13 N -0.890 5.890 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.256 1.256 18 C 0.115 3.885 19 C -0.110 4.110 20 C 0.474 3.526 21 O -0.537 6.537 22 O -0.363 6.363 23 C 0.026 3.974 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.114 4.114 27 C -0.106 4.106 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.270 0.730 34 H 0.114 0.886 35 H 0.036 0.964 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.138 0.862 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 2.447 7.166 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 O -0.285 6.285 4 C 0.342 3.658 5 O -0.406 6.406 6 C -0.062 4.062 7 C 0.276 3.724 8 O -0.493 6.493 9 N -0.161 5.161 10 C -0.475 4.475 11 H 0.123 0.877 12 C -0.188 4.188 13 N -0.527 5.527 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.180 1.180 18 C -0.009 4.009 19 C -0.149 4.149 20 C 0.318 3.682 21 O -0.426 6.426 22 O -0.279 6.279 23 C -0.066 4.066 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.143 4.143 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.054 0.946 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.749 2.556 6.758 8.140 hybrid contribution -0.135 -0.999 -1.119 1.506 sum 3.614 1.557 5.640 6.877 Atomic orbital electron populations 1.21794 0.90475 1.04451 1.03152 1.23196 0.97153 0.79594 1.01833 1.86515 1.25022 1.33383 1.83542 1.22944 0.80374 0.91799 0.70639 1.90521 1.59907 1.43290 1.46861 1.21216 0.99270 0.89162 0.96554 1.20359 0.80204 0.86400 0.85404 1.90511 1.43652 1.28364 1.86728 1.43468 1.51692 1.16432 1.04480 1.19856 1.19779 0.91223 1.16658 0.87704 1.26152 0.95364 1.01589 0.95665 1.69710 1.30626 1.37008 1.15362 0.85470 0.79672 0.79106 0.77387 1.19815 1.20757 1.18027 1.21358 0.93723 0.93206 0.92601 1.21620 1.02553 0.97385 0.93345 1.23830 0.81151 0.77952 0.85311 1.90640 1.28687 1.66082 1.57217 1.86506 1.43673 1.51544 1.46181 1.23572 1.04523 0.94283 0.84269 1.22350 0.99908 0.99058 0.92695 1.22466 0.92962 0.97651 1.01941 1.22412 0.98924 0.98749 0.95075 1.22248 0.89182 1.03359 0.99542 0.90525 0.93023 0.87476 0.93579 0.90142 0.91975 0.86884 0.94587 0.87902 0.86721 0.84374 0.92248 0.92114 0.89944 0.90897 0.88221 0.92056 0.89317 0.89868 0.91472 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 10.29 71.98 0.74 -2.97 16 2 C 0.06 1.91 6.21 71.98 0.45 2.36 16 3 O -0.37 -15.57 10.12 -51.40 -0.52 -16.09 16 4 C 0.50 21.45 4.74 71.24 0.34 21.79 16 5 O -0.52 -23.12 13.91 21.93 0.30 -22.82 16 6 C -0.06 -2.31 0.56 -52.95 -0.03 -2.34 16 7 C 0.49 23.42 6.22 87.66 0.55 23.97 16 8 O -0.61 -31.47 14.89 -3.08 -0.05 -31.52 16 9 N -0.44 -22.06 2.49 -635.54 -1.58 -23.64 16 10 C -0.35 -17.32 6.36 84.04 0.53 -16.79 16 11 H 0.11 5.07 4.86 -2.91 -0.01 5.06 16 12 C 0.02 0.80 5.39 84.93 0.46 1.26 16 13 N -0.89 -48.27 10.76 21.66 0.23 -48.04 16 14 Si 0.96 41.78 29.55 68.60 2.03 43.81 16 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 C 0.11 5.72 4.43 86.38 0.38 6.10 16 19 C -0.11 -4.44 6.12 29.85 0.18 -4.26 16 20 C 0.47 18.45 7.96 71.24 0.57 19.01 16 21 O -0.54 -24.23 15.73 21.97 0.35 -23.88 16 22 O -0.36 -11.47 10.57 -51.43 -0.54 -12.01 16 23 C 0.03 0.62 10.56 113.37 1.20 1.81 16 24 C -0.10 -3.40 5.65 31.67 0.18 -3.22 16 25 C -0.11 -2.95 6.91 31.88 0.22 -2.73 16 26 C -0.11 -2.86 6.83 31.67 0.22 -2.64 16 27 C -0.11 -3.63 4.29 31.32 0.13 -3.50 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 33 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.11 6.24 5.12 -2.39 -0.01 6.23 16 35 H 0.04 1.95 7.20 -2.39 -0.02 1.93 16 36 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 38 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 40 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 41 H 0.08 2.41 7.85 -2.38 -0.02 2.39 16 42 H 0.07 2.74 6.84 -2.39 -0.02 2.72 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 2.43 7.17 -2.39 -0.02 2.41 16 48 H 0.08 3.08 6.06 -2.39 -0.01 3.07 16 Total: -1.00 -69.42 389.19 7.30 -62.12 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.97 Total: 34.22 kcal Atomic # 6 Polarization: 31.74 SS G_CDS: 6.11 Total: 37.85 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -1.35 Total: -71.68 kcal Atomic # 8 Polarization: -105.86 SS G_CDS: -0.46 Total: -106.32 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.42 7.30 -62.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871348387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.882 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds