Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40293 * 126.09348 * 2 1 4 4 C 1.31078 * 108.27091 * 179.91300 * 3 2 1 5 5 C 1.39292 * 108.07771 * 359.97438 * 4 3 2 6 6 C 1.34325 * 126.09173 * 179.97438 * 2 1 3 7 7 C 1.50827 * 128.03106 * 0.24321 * 6 2 1 8 8 C 1.53366 * 108.38157 * 163.36573 * 7 6 2 9 9 C 1.53100 * 109.51002 * 49.93117 * 8 7 6 10 10 C 1.50841 * 127.90229 * 180.08994 * 5 4 3 11 11 H 1.08995 * 109.68667 * 283.18077 * 10 5 4 12 12 N 1.46506 * 109.67659 * 43.73540 * 10 5 4 13 13 C 1.34777 * 119.99788 * 273.92050 * 12 10 5 14 14 O 1.21573 * 120.00056 * 0.02562 * 13 12 10 15 15 N 1.34776 * 119.99928 * 180.02562 * 13 12 10 16 16 C 1.39243 * 119.99829 * 174.83551 * 15 13 12 17 17 C 1.39690 * 119.57595 * 185.71762 * 16 15 13 18 18 C 1.38638 * 119.49886 * 179.97438 * 17 16 15 19 19 C 1.38358 * 118.67051 * 0.02562 * 18 17 16 20 20 C 1.40568 * 119.12893 * 359.97438 * 19 18 17 21 21 C 1.41338 * 119.78767 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99503 * 5.69563 * 21 20 19 23 23 C 1.40027 * 119.99967 * 185.70668 * 21 20 19 24 24 N 1.30739 * 120.00003 * 354.91008 * 23 21 20 25 25 Si 1.86800 * 119.99662 * 174.91573 * 23 21 20 26 26 H 1.48501 * 109.47227 * 94.99708 * 25 23 21 27 27 H 1.48501 * 109.46886 * 214.99099 * 25 23 21 28 28 H 1.48495 * 109.47242 * 334.99661 * 25 23 21 29 29 N 1.31900 * 119.57942 * 5.45110 * 16 15 13 30 30 H 1.09002 * 109.47304 * 89.97163 * 1 2 3 31 31 H 1.09000 * 109.47558 * 209.97475 * 1 2 3 32 32 H 1.09004 * 109.47212 * 329.97853 * 1 2 3 33 33 H 1.07994 * 125.95841 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.68053 * 283.07339 * 7 6 2 35 35 H 1.08998 * 109.68433 * 43.59439 * 7 6 2 36 36 H 1.09002 * 109.45851 * 289.91635 * 8 7 6 37 37 H 1.08997 * 109.46326 * 169.94346 * 8 7 6 38 38 H 1.09003 * 109.46470 * 169.70640 * 9 8 7 39 39 H 1.09005 * 109.46670 * 49.72668 * 9 8 7 40 40 H 0.97003 * 119.99996 * 93.92389 * 12 10 5 41 41 H 0.96998 * 120.00197 * 354.84506 * 15 13 12 42 42 H 1.08008 * 120.24714 * 359.95903 * 17 16 15 43 43 H 1.08001 * 120.66921 * 180.02562 * 18 17 16 44 44 H 1.08002 * 120.43445 * 179.97438 * 19 18 17 45 45 H 0.97000 * 119.99744 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2914 1.1336 0.0000 4 6 3.5393 0.7325 0.0019 5 6 3.5455 -0.6604 0.0037 6 6 2.2562 -1.0854 0.0005 7 6 1.8436 -2.5362 -0.0039 8 6 3.0540 -3.3820 -0.4181 9 6 4.2694 -2.9814 0.4223 10 6 4.7398 -1.5818 0.0081 11 1 5.1761 -1.6221 -0.9899 12 7 5.7367 -1.0926 0.9638 13 6 6.6414 -0.1700 0.5809 14 8 6.6301 0.2566 -0.5575 15 7 7.5588 0.2796 1.4599 16 6 8.5595 1.1508 1.0373 17 6 9.5748 1.5168 1.9242 18 6 10.5706 2.3838 1.5016 19 6 10.5268 2.8634 0.2046 20 6 9.4789 2.4577 -0.6399 21 6 9.4208 2.9386 -1.9677 22 1 10.2272 3.5409 -2.3595 23 6 8.3179 2.6344 -2.7749 24 7 7.3900 1.8247 -2.3359 25 14 8.1724 3.3854 -4.4791 26 1 8.7209 2.4405 -5.4850 27 1 6.7436 3.6550 -4.7809 28 1 8.9370 4.6575 -4.5265 29 7 8.5397 1.6156 -0.1969 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 4.4105 1.3706 0.0028 34 1 1.5165 -2.8278 0.9941 35 1 1.0307 -2.6845 -0.7147 36 1 3.2705 -3.2140 -1.4731 37 1 2.8324 -4.4369 -0.2564 38 1 5.0748 -3.6979 0.2608 39 1 3.9953 -2.9747 1.4773 40 1 5.7455 -1.4328 1.8722 41 1 7.5221 -0.0037 2.3868 42 1 9.5837 1.1275 2.9316 43 1 11.3648 2.6790 2.1714 44 1 11.2878 3.5406 -0.1543 45 1 6.6262 1.6137 -2.8953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 111.541981 kcal Electronic energy + Delta-G solvation = -29993.138872 eV Core-core repulsion = 26013.356102 eV Total energy + Delta-G solvation = -3979.782770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41820 -39.34026 -37.77431 -36.57255 -34.23468 -33.71845 -32.91033 -32.69561 -30.21385 -29.60831 -29.26398 -28.13805 -26.54033 -25.41945 -23.42408 -22.02022 -21.79517 -21.11354 -20.53763 -19.64882 -18.72045 -17.89884 -17.11286 -16.70443 -16.11519 -15.72674 -14.97890 -14.67947 -14.44351 -14.40114 -14.21265 -14.03156 -13.83128 -13.51646 -13.34141 -13.01389 -12.94665 -12.81781 -12.69435 -12.49788 -12.01818 -11.87174 -11.79586 -11.31178 -11.11789 -11.02514 -10.87227 -10.74962 -10.56946 -10.38171 -10.34559 -9.85341 -9.59389 -9.06679 -9.00386 -8.93448 -8.41332 -8.07228 -7.86128 -7.11289 -6.84496 -6.02977 -4.29823 1.97485 2.61270 2.92462 2.99511 3.21258 3.24460 3.26686 3.35115 3.49260 4.14881 4.30262 4.42630 4.51456 4.68908 4.71119 4.96573 4.99038 5.02781 5.04872 5.20841 5.22160 5.31650 5.44222 5.52133 5.57361 5.71554 5.91048 5.97872 6.13586 6.14476 6.20311 6.27570 6.34777 6.56545 6.71232 6.89246 6.93551 6.97224 7.09604 7.19709 7.33839 7.47310 7.71007 7.84849 7.90067 7.95017 8.26576 8.39795 8.77628 8.90285 9.15473 9.71540 10.36271 10.58405 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003789 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.680231 B = 7388.308285 C = 8671.742870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.377 5.377 3 N -0.309 5.309 4 C 0.088 3.912 5 C -0.239 4.239 6 C 0.076 3.924 7 C -0.052 4.052 8 C -0.108 4.108 9 C -0.124 4.124 10 C 0.248 3.752 11 H 0.095 0.905 12 N -0.751 5.751 13 C 0.664 3.336 14 O -0.460 6.460 15 N -0.674 5.674 16 C 0.388 3.612 17 C -0.359 4.359 18 C -0.036 4.036 19 C -0.308 4.308 20 C 0.272 3.728 21 C -0.426 4.426 22 H 0.081 0.919 23 C 0.058 3.942 24 N -0.646 5.646 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.278 1.278 28 H -0.264 1.264 29 N -0.470 5.470 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.383 0.617 41 H 0.394 0.606 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -12.294 6.198 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.158 5.158 3 N -0.130 5.130 4 C -0.097 4.097 5 C -0.252 4.252 6 C -0.053 4.053 7 C -0.091 4.091 8 C -0.147 4.147 9 C -0.162 4.162 10 C 0.141 3.859 11 H 0.112 0.888 12 N -0.409 5.409 13 C 0.362 3.638 14 O -0.324 6.324 15 N -0.323 5.323 16 C 0.148 3.852 17 C -0.385 4.385 18 C -0.061 4.061 19 C -0.331 4.331 20 C 0.147 3.853 21 C -0.457 4.457 22 H 0.099 0.901 23 C -0.171 4.171 24 N -0.264 5.264 25 Si 0.716 3.284 26 H -0.198 1.198 27 H -0.204 1.204 28 H -0.188 1.188 29 N -0.188 5.188 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.203 0.797 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.215 0.785 41 H 0.226 0.774 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.901 -11.215 4.384 19.946 hybrid contribution 1.005 -0.233 0.894 1.365 sum -14.896 -11.448 5.277 19.514 Atomic orbital electron populations 1.21730 0.75143 1.03945 1.02958 1.48203 1.06079 1.03773 1.57787 1.77609 1.01865 1.06869 1.26681 1.23783 0.94731 0.94913 0.96305 1.20363 0.93759 0.94486 1.16606 1.20837 0.91089 0.90378 1.02994 1.20306 0.98895 0.87715 1.02221 1.21483 0.93456 0.98859 1.00902 1.21854 0.97936 0.96231 1.00216 1.18876 0.84191 0.88962 0.93860 0.88761 1.45338 1.34626 1.46488 1.14480 1.16450 0.80057 0.80966 0.86340 1.91389 1.70150 1.55481 1.15346 1.42589 1.29488 1.48701 1.11482 1.18340 0.85794 0.89223 0.91826 1.20437 1.02853 1.15414 0.99805 1.20534 0.95696 0.94748 0.95086 1.21616 1.04792 1.10979 0.95735 1.18378 0.86319 0.87651 0.92968 1.19549 1.03915 1.27070 0.95127 0.90123 1.26150 0.96300 0.95330 0.99363 1.70330 1.04544 1.18216 1.33319 0.86578 0.78235 0.80313 0.83305 1.19846 1.20361 1.18780 1.68700 1.26318 1.13876 1.09933 0.91145 0.90029 0.89547 0.79695 0.90144 0.90567 0.90900 0.90690 0.90752 0.91461 0.78509 0.77360 0.89279 0.88764 0.88712 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 11.32 59.84 0.68 1.57 16 2 N -0.38 -5.17 4.00 -63.88 -0.26 -5.42 16 3 N -0.31 -5.52 12.59 30.54 0.38 -5.13 16 4 C 0.09 1.63 11.40 -17.48 -0.20 1.43 16 5 C -0.24 -3.68 5.60 -105.05 -0.59 -4.27 16 6 C 0.08 0.97 6.73 -82.33 -0.55 0.42 16 7 C -0.05 -0.43 5.83 -27.63 -0.16 -0.59 16 8 C -0.11 -0.86 5.90 -26.49 -0.16 -1.02 16 9 C -0.12 -1.18 5.39 -26.50 -0.14 -1.32 16 10 C 0.25 3.49 2.82 -68.83 -0.19 3.29 16 11 H 0.09 1.60 7.57 -51.93 -0.39 1.20 16 12 N -0.75 -11.12 5.01 -59.57 -0.30 -11.42 16 13 C 0.66 13.38 7.78 -86.92 -0.68 12.70 16 14 O -0.46 -11.42 11.08 5.30 0.06 -11.36 16 15 N -0.67 -13.40 5.39 -15.79 -0.09 -13.48 16 16 C 0.39 9.56 7.43 -155.00 -1.15 8.41 16 17 C -0.36 -8.19 9.95 -38.89 -0.39 -8.58 16 18 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 19 C -0.31 -7.92 9.83 -38.66 -0.38 -8.30 16 20 C 0.27 7.76 6.54 -85.00 -0.56 7.20 16 21 C -0.43 -11.94 9.13 -37.73 -0.34 -12.29 16 22 H 0.08 2.13 7.85 -52.48 -0.41 1.71 16 23 C 0.06 1.56 5.49 -17.35 -0.10 1.47 16 24 N -0.65 -18.10 9.07 55.55 0.50 -17.60 16 25 Si 0.89 19.82 29.56 -169.99 -5.03 14.80 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 29 N -0.47 -13.29 5.74 -10.26 -0.06 -13.34 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.46 7.90 -51.93 -0.41 0.05 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.19 3.96 7.04 -52.49 -0.37 3.59 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.38 4.44 8.62 -40.82 -0.35 4.09 16 41 H 0.39 6.08 8.72 -40.82 -0.36 5.73 16 42 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -35.54 370.31 -10.58 -46.12 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.07 Total: 12.37 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -5.31 Total: -1.11 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: 0.19 Total: -66.40 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.06 Total: -11.36 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.54 -10.58 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.666 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds