Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40293 * 126.09348 * 2 1 4 4 C 1.31078 * 108.27091 * 179.91300 * 3 2 1 5 5 C 1.39292 * 108.07771 * 359.97438 * 4 3 2 6 6 C 1.34325 * 126.09173 * 179.97438 * 2 1 3 7 7 C 1.50827 * 128.03106 * 0.24321 * 6 2 1 8 8 C 1.53366 * 108.38157 * 163.36573 * 7 6 2 9 9 C 1.53100 * 109.51002 * 49.93117 * 8 7 6 10 10 C 1.50841 * 127.90229 * 180.08994 * 5 4 3 11 11 H 1.08995 * 109.68667 * 283.18077 * 10 5 4 12 12 N 1.46506 * 109.67659 * 43.73540 * 10 5 4 13 13 C 1.34777 * 119.99788 * 273.92050 * 12 10 5 14 14 O 1.21573 * 120.00056 * 0.02562 * 13 12 10 15 15 N 1.34776 * 119.99928 * 180.02562 * 13 12 10 16 16 C 1.39243 * 119.99829 * 174.83551 * 15 13 12 17 17 C 1.39690 * 119.57595 * 185.71762 * 16 15 13 18 18 C 1.38638 * 119.49886 * 179.97438 * 17 16 15 19 19 C 1.38358 * 118.67051 * 0.02562 * 18 17 16 20 20 C 1.40568 * 119.12893 * 359.97438 * 19 18 17 21 21 C 1.41338 * 119.78767 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99503 * 5.69563 * 21 20 19 23 23 C 1.40027 * 119.99967 * 185.70668 * 21 20 19 24 24 N 1.30739 * 120.00003 * 354.91008 * 23 21 20 25 25 Si 1.86800 * 119.99662 * 174.91573 * 23 21 20 26 26 H 1.48501 * 109.47227 * 94.99708 * 25 23 21 27 27 H 1.48501 * 109.46886 * 214.99099 * 25 23 21 28 28 H 1.48495 * 109.47242 * 334.99661 * 25 23 21 29 29 N 1.31900 * 119.57942 * 5.45110 * 16 15 13 30 30 H 1.09002 * 109.47304 * 89.97163 * 1 2 3 31 31 H 1.09000 * 109.47558 * 209.97475 * 1 2 3 32 32 H 1.09004 * 109.47212 * 329.97853 * 1 2 3 33 33 H 1.07994 * 125.95841 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.68053 * 283.07339 * 7 6 2 35 35 H 1.08998 * 109.68433 * 43.59439 * 7 6 2 36 36 H 1.09002 * 109.45851 * 289.91635 * 8 7 6 37 37 H 1.08997 * 109.46326 * 169.94346 * 8 7 6 38 38 H 1.09003 * 109.46470 * 169.70640 * 9 8 7 39 39 H 1.09005 * 109.46670 * 49.72668 * 9 8 7 40 40 H 0.97003 * 119.99996 * 93.92389 * 12 10 5 41 41 H 0.96998 * 120.00197 * 354.84506 * 15 13 12 42 42 H 1.08008 * 120.24714 * 359.95903 * 17 16 15 43 43 H 1.08001 * 120.66921 * 180.02562 * 18 17 16 44 44 H 1.08002 * 120.43445 * 179.97438 * 19 18 17 45 45 H 0.97000 * 119.99744 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2914 1.1336 0.0000 4 6 3.5393 0.7325 0.0019 5 6 3.5455 -0.6604 0.0037 6 6 2.2562 -1.0854 0.0005 7 6 1.8436 -2.5362 -0.0039 8 6 3.0540 -3.3820 -0.4181 9 6 4.2694 -2.9814 0.4223 10 6 4.7398 -1.5818 0.0081 11 1 5.1761 -1.6221 -0.9899 12 7 5.7367 -1.0926 0.9638 13 6 6.6414 -0.1700 0.5809 14 8 6.6301 0.2566 -0.5575 15 7 7.5588 0.2796 1.4599 16 6 8.5595 1.1508 1.0373 17 6 9.5748 1.5168 1.9242 18 6 10.5706 2.3838 1.5016 19 6 10.5268 2.8634 0.2046 20 6 9.4789 2.4577 -0.6399 21 6 9.4208 2.9386 -1.9677 22 1 10.2272 3.5409 -2.3595 23 6 8.3179 2.6344 -2.7749 24 7 7.3900 1.8247 -2.3359 25 14 8.1724 3.3854 -4.4791 26 1 8.7209 2.4405 -5.4850 27 1 6.7436 3.6550 -4.7809 28 1 8.9370 4.6575 -4.5265 29 7 8.5397 1.6156 -0.1969 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 4.4105 1.3706 0.0028 34 1 1.5165 -2.8278 0.9941 35 1 1.0307 -2.6845 -0.7147 36 1 3.2705 -3.2140 -1.4731 37 1 2.8324 -4.4369 -0.2564 38 1 5.0748 -3.6979 0.2608 39 1 3.9953 -2.9747 1.4773 40 1 5.7455 -1.4328 1.8722 41 1 7.5221 -0.0037 2.3868 42 1 9.5837 1.1275 2.9316 43 1 11.3648 2.6790 2.1714 44 1 11.2878 3.5406 -0.1543 45 1 6.6262 1.6137 -2.8953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881154723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 87.096071 kcal Electronic energy + Delta-G solvation = -29994.198927 eV Core-core repulsion = 26013.356102 eV Total energy + Delta-G solvation = -3980.842824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.53486 -40.98623 -39.50296 -37.67634 -35.86412 -35.05135 -34.76413 -33.87303 -32.16394 -31.03992 -30.43668 -29.47367 -27.43350 -27.37289 -24.63215 -23.52526 -22.95770 -22.85753 -21.76013 -21.24806 -19.82122 -19.59971 -18.60987 -18.10771 -17.61818 -16.84796 -16.46452 -16.22999 -16.12262 -15.69782 -15.59411 -15.45838 -14.99124 -14.76828 -14.59591 -14.54121 -14.25826 -13.86738 -13.82574 -13.69941 -13.61206 -13.29858 -12.91271 -12.75883 -12.70249 -12.53391 -12.29085 -12.09107 -11.77432 -11.76353 -11.60428 -11.50861 -11.42046 -10.82434 -10.73202 -10.17445 -9.86951 -9.77812 -9.21842 -9.03638 -8.72574 -7.99891 -6.37420 0.89237 1.00517 1.31914 1.37709 1.49760 1.53471 1.64597 1.67767 2.08813 2.26734 2.66988 3.07895 3.45806 3.63469 3.66714 3.93365 4.11545 4.12975 4.20816 4.28951 4.39336 4.39809 4.51160 4.59913 4.65797 4.68860 4.76587 4.77486 4.88332 4.92595 4.99809 5.02542 5.10949 5.20671 5.28506 5.30623 5.32136 5.44100 5.65113 5.71323 5.86769 5.91760 5.96424 6.09715 6.23026 6.37440 6.48001 6.73606 6.86157 7.11634 7.37293 8.13549 8.43005 8.60811 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003789 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.680231 B = 7388.308285 C = 8671.742870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.371 5.371 3 N -0.350 5.350 4 C 0.059 3.941 5 C -0.264 4.264 6 C 0.098 3.902 7 C -0.048 4.048 8 C -0.106 4.106 9 C -0.114 4.114 10 C 0.248 3.752 11 H 0.053 0.947 12 N -0.728 5.728 13 C 0.657 3.343 14 O -0.509 6.509 15 N -0.664 5.664 16 C 0.367 3.633 17 C -0.347 4.347 18 C -0.034 4.034 19 C -0.333 4.333 20 C 0.239 3.761 21 C -0.467 4.467 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.678 5.678 25 Si 0.968 3.032 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.254 1.254 29 N -0.504 5.504 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.402 0.598 41 H 0.415 0.585 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.103 0.897 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.025 -15.172 7.975 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.152 5.152 3 N -0.173 5.173 4 C -0.125 4.125 5 C -0.277 4.277 6 C -0.034 4.034 7 C -0.087 4.087 8 C -0.145 4.145 9 C -0.152 4.152 10 C 0.141 3.859 11 H 0.071 0.929 12 N -0.387 5.387 13 C 0.355 3.645 14 O -0.376 6.376 15 N -0.314 5.314 16 C 0.127 3.873 17 C -0.372 4.372 18 C -0.058 4.058 19 C -0.356 4.356 20 C 0.113 3.887 21 C -0.498 4.498 22 H 0.102 0.898 23 C -0.214 4.214 24 N -0.297 5.297 25 Si 0.789 3.211 26 H -0.190 1.190 27 H -0.204 1.204 28 H -0.178 1.178 29 N -0.223 5.223 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.238 0.762 41 H 0.252 0.748 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.121 0.879 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.902 -14.130 6.241 23.645 hybrid contribution 1.546 0.602 0.529 1.742 sum -16.356 -13.527 6.770 22.279 Atomic orbital electron populations 1.22219 0.71984 1.06101 1.04575 1.48610 1.07739 1.02909 1.55970 1.77468 1.02044 1.09453 1.28317 1.23292 0.94041 0.96280 0.98852 1.20477 0.95687 0.93081 1.18454 1.21590 0.89784 0.92439 0.99537 1.20592 0.99644 0.83575 1.04867 1.21536 0.92404 1.00944 0.99569 1.21841 0.99112 0.92579 1.01670 1.18987 0.83237 0.91727 0.91919 0.92892 1.45064 1.33326 1.44670 1.15657 1.16729 0.80547 0.81379 0.85810 1.91379 1.71467 1.57175 1.17592 1.42446 1.28552 1.47831 1.12606 1.18846 0.87294 0.89685 0.91500 1.20919 1.01325 1.13853 1.01113 1.21013 0.96568 0.93693 0.94574 1.21795 1.04721 1.12085 0.96968 1.18863 0.87492 0.88344 0.94015 1.19847 1.05054 1.28805 0.96107 0.89814 1.26979 0.95570 0.95532 1.03329 1.70555 1.04854 1.19764 1.34539 0.85418 0.77972 0.79680 0.78029 1.18968 1.20440 1.17773 1.68668 1.26973 1.14611 1.12066 0.89748 0.85823 0.89520 0.84272 0.86897 0.87883 0.92473 0.86848 0.89892 0.89360 0.76205 0.74809 0.85143 0.84567 0.87923 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 11.32 127.77 1.45 2.73 16 2 N -0.37 -9.73 4.00 -356.02 -1.42 -11.16 16 3 N -0.35 -13.14 12.59 -57.28 -0.72 -13.86 16 4 C 0.06 2.38 11.40 85.06 0.97 3.35 16 5 C -0.26 -8.36 5.60 -20.14 -0.11 -8.47 16 6 C 0.10 2.31 6.73 41.64 0.28 2.59 16 7 C -0.05 -0.55 5.83 30.01 0.17 -0.37 16 8 C -0.11 -1.26 5.90 30.75 0.18 -1.08 16 9 C -0.11 -1.85 5.39 30.75 0.17 -1.69 16 10 C 0.25 7.13 2.82 44.41 0.13 7.25 16 11 H 0.05 1.95 7.57 -2.39 -0.02 1.94 16 12 N -0.73 -22.07 5.01 -460.64 -2.31 -24.38 16 13 C 0.66 27.95 7.78 179.05 1.39 29.35 16 14 O -0.51 -27.44 11.08 -3.95 -0.04 -27.48 16 15 N -0.66 -26.90 5.39 -322.13 -1.74 -28.64 16 16 C 0.37 18.48 7.43 133.26 0.99 19.47 16 17 C -0.35 -15.35 9.95 22.72 0.23 -15.12 16 18 C -0.03 -1.55 10.15 22.39 0.23 -1.32 16 19 C -0.33 -17.48 9.83 22.87 0.22 -17.26 16 20 C 0.24 14.32 6.54 40.19 0.26 14.58 16 21 C -0.47 -27.76 9.13 23.47 0.21 -27.55 16 22 H 0.08 4.67 7.85 -2.91 -0.02 4.65 16 23 C 0.01 0.68 5.49 85.29 0.47 1.15 16 24 N -0.68 -41.04 9.07 21.84 0.20 -40.84 16 25 Si 0.97 43.19 29.56 68.60 2.03 45.22 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 29 N -0.50 -30.06 5.74 -186.37 -1.07 -31.13 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.12 0.75 7.90 -2.39 -0.02 0.73 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.14 6.84 7.04 -2.91 -0.02 6.82 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.11 8.10 -2.38 -0.02 1.09 16 40 H 0.40 8.91 8.62 -92.71 -0.80 8.11 16 41 H 0.42 12.47 8.72 -92.71 -0.81 11.66 16 42 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 43 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 Total: -1.00 -88.04 370.31 1.60 -86.44 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.56 Total: 38.21 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 7.24 Total: 7.61 kcal Atomic # 7 Polarization: -142.94 SS G_CDS: -7.06 Total: -150.00 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.04 Total: -27.48 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -88.04 1.60 -86.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.538 kcal (2) G-P(sol) polarization free energy of solvation -88.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds