Wall clock time and date at job start Sat Apr 11 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47077 * 2 1 4 4 C 1.34774 * 119.99869 * 184.97358 * 3 2 1 5 5 O 1.21610 * 120.00099 * 5.01488 * 4 3 2 6 6 N 1.34779 * 119.99785 * 185.01801 * 4 3 2 7 7 N 1.40093 * 120.00145 * 5.00455 * 6 4 3 8 8 C 1.29743 * 120.00208 * 174.99502 * 7 6 4 9 9 C 1.47445 * 120.00544 * 185.00889 * 8 7 6 10 10 C 1.36754 * 126.68036 * 354.70556 * 9 8 7 11 11 N 1.34637 * 108.04525 * 180.02562 * 10 9 8 12 12 C 1.46500 * 125.25589 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47008 * 125.00375 * 12 11 10 14 14 H 1.07993 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99435 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00364 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99404 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47351 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46912 * 119.99968 * 17 15 13 20 20 H 1.48494 * 109.47140 * 240.00114 * 17 15 13 21 21 N 1.39824 * 109.49173 * 0.02562 * 11 10 9 22 22 C 1.31529 * 108.82125 * 359.70112 * 21 11 10 23 23 C 1.48269 * 126.49932 * 180.28056 * 22 21 11 24 24 C 1.39388 * 120.12551 * 138.72614 * 23 22 21 25 25 C 1.38011 * 119.86795 * 179.72131 * 24 23 22 26 26 C 1.38335 * 120.12671 * 0.56275 * 25 24 23 27 27 C 1.38331 * 120.25454 * 359.71269 * 26 25 24 28 28 C 1.38008 * 120.12450 * 0.02562 * 27 26 25 29 29 H 1.09006 * 109.46961 * 184.98549 * 1 2 3 30 30 H 1.09000 * 109.47177 * 304.98824 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.98893 * 1 2 3 32 32 H 1.08999 * 109.47490 * 239.99983 * 2 1 3 33 33 H 1.08998 * 109.47370 * 119.99536 * 2 1 3 34 34 H 0.96999 * 120.00099 * 4.96866 * 3 2 1 35 35 H 0.97000 * 119.99482 * 185.01542 * 6 4 3 36 36 H 1.08004 * 120.00067 * 5.28515 * 8 7 6 37 37 H 1.07999 * 125.97736 * 359.96973 * 10 9 8 38 38 H 1.09001 * 109.47069 * 245.00571 * 12 11 10 39 39 H 1.08994 * 109.47052 * 5.00035 * 12 11 10 40 40 H 0.96992 * 119.99470 * 179.97438 * 16 15 13 41 41 H 1.07994 * 120.06462 * 0.02562 * 24 23 22 42 42 H 1.08001 * 119.93762 * 180.27530 * 25 24 23 43 43 H 1.07998 * 119.87214 * 179.74303 * 26 25 24 44 44 H 1.08001 * 119.93454 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.05767 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3392 1.6290 -0.1012 5 8 4.1175 0.7126 -0.2840 6 7 3.7976 2.8924 0.0003 7 7 2.9157 3.9344 0.3151 8 6 3.3712 5.1337 0.5084 9 6 2.4601 6.2067 0.9473 10 6 1.1033 6.1172 1.0937 11 7 0.6491 7.3140 1.5109 12 6 -0.7529 7.6368 1.7874 13 6 -0.8773 8.1758 3.1892 14 1 0.0003 8.2691 3.8117 15 6 -2.1115 8.5500 3.6769 16 7 -3.1801 8.4369 2.9187 17 14 -2.2657 9.2175 5.4148 18 1 -0.9262 9.2451 6.0552 19 1 -2.8203 10.5943 5.3688 20 1 -3.1732 8.3443 6.2017 21 7 1.7220 8.2013 1.6396 22 6 2.8322 7.5744 1.3162 23 6 4.2006 8.1451 1.3207 24 6 5.2711 7.3920 1.8001 25 6 6.5436 7.9263 1.7965 26 6 6.7559 9.2109 1.3290 27 6 5.6965 9.9649 0.8573 28 6 4.4205 9.4390 0.8512 29 1 -0.3633 -1.0238 0.0893 30 1 -0.3633 0.5893 0.8419 31 1 -0.3633 0.4345 -0.9313 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.3910 2.1175 0.0728 35 1 4.7382 3.0801 -0.1447 36 1 4.4170 5.3473 0.3435 37 1 0.5014 5.2403 0.9065 38 1 -1.0998 8.3876 1.0773 39 1 -1.3592 6.7364 1.6892 40 1 -4.0483 8.6998 3.2620 41 1 5.1058 6.3906 2.1692 42 1 7.3745 7.3422 2.1636 43 1 7.7527 9.6264 1.3319 44 1 5.8682 10.9671 0.4932 45 1 3.5942 10.0285 0.4823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920827879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:58 Heat of formation + Delta-G solvation = 99.774014 kcal Electronic energy + Delta-G solvation = -27873.177342 eV Core-core repulsion = 23892.884275 eV Total energy + Delta-G solvation = -3980.293067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56573 -39.92004 -38.79545 -36.71840 -35.30740 -34.02065 -32.63565 -32.34259 -30.92580 -30.37084 -30.13211 -28.94954 -26.99472 -23.92397 -23.61203 -23.15322 -22.45764 -21.67181 -20.89761 -19.85537 -19.50795 -18.17391 -17.23831 -16.88665 -16.64475 -16.06289 -15.83359 -15.41362 -15.09826 -14.91962 -14.61068 -14.37181 -14.28825 -14.18588 -13.70296 -13.38475 -13.17081 -12.97101 -12.63803 -12.60847 -12.45849 -12.28779 -11.97336 -11.82700 -11.61013 -11.26311 -11.14308 -11.04936 -10.97407 -10.54050 -10.40072 -10.24445 -10.19659 -9.91057 -9.53595 -9.21990 -9.03364 -8.92811 -8.72927 -8.34470 -7.50923 -6.36038 -4.41869 1.10597 1.41851 1.58510 2.47136 2.63544 3.09236 3.16173 3.18272 3.24561 3.32360 3.42435 3.58090 3.91701 4.22396 4.57853 4.81254 4.85940 4.92717 4.95895 4.96687 5.00587 5.11610 5.17962 5.23214 5.38379 5.45661 5.56275 5.64209 5.66756 5.77428 5.90078 5.91658 6.01846 6.09307 6.22186 6.36287 6.44425 6.49651 6.54821 6.69285 6.76732 6.83510 6.95605 7.03461 7.34799 7.51796 7.70605 7.72159 8.12149 8.27233 8.59225 8.65843 9.24975 10.72837 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.005877 B = 0.003712 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4763.452025 B = 7542.232960 C =11721.209512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.130 3.870 3 N -0.730 5.730 4 C 0.733 3.267 5 O -0.596 6.596 6 N -0.591 5.591 7 N -0.293 5.293 8 C 0.193 3.807 9 C -0.234 4.234 10 C 0.111 3.889 11 N -0.318 5.318 12 C 0.252 3.748 13 C -0.533 4.533 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 N -0.251 5.251 22 C 0.107 3.893 23 C 0.004 3.996 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.092 4.092 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.410 0.590 35 H 0.395 0.605 36 H 0.115 0.885 37 H 0.178 0.822 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.268 0.732 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.962 -6.382 -6.127 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.387 5.387 4 C 0.433 3.567 5 O -0.473 6.473 6 N -0.338 5.338 7 N -0.103 5.103 8 C -0.016 4.016 9 C -0.249 4.249 10 C -0.042 4.042 11 N -0.095 5.095 12 C 0.135 3.865 13 C -0.571 4.571 14 H 0.089 0.911 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.207 1.207 21 N -0.071 5.071 22 C -0.062 4.062 23 C 0.002 3.998 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.111 4.111 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.235 0.765 36 H 0.132 0.868 37 H 0.195 0.805 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.680 -6.706 -5.868 14.691 hybrid contribution 0.883 0.471 0.573 1.154 sum 12.563 -6.235 -5.295 14.991 Atomic orbital electron populations 1.22014 0.94272 1.03109 1.02959 1.21192 0.94164 0.82008 1.02102 1.45120 1.05975 1.09450 1.78164 1.15413 0.83104 0.80942 0.77218 1.90974 1.56367 1.41755 1.58191 1.46224 1.09416 1.04365 1.73745 1.74408 1.20374 0.98109 1.17446 1.23393 0.97010 0.89129 0.92058 1.19000 0.91728 0.92959 1.21252 1.22680 0.94379 0.91127 0.96054 1.49351 1.09079 1.06194 1.44922 1.19914 0.69213 0.98692 0.98708 1.21241 0.94525 1.44028 0.97295 0.91109 1.24926 0.95202 0.95069 0.98645 1.69914 0.99181 1.47207 1.36765 0.86274 0.78425 0.78676 0.83195 1.19460 1.20596 1.20679 1.77533 0.92659 1.16433 1.20511 1.21750 0.92322 0.91008 1.01136 1.17778 0.88928 0.93790 0.99275 1.21180 0.91920 0.99953 0.99151 1.21029 0.96628 0.95865 1.00496 1.21184 0.98909 0.94652 0.99206 1.21085 0.92585 0.99927 1.00279 1.21299 0.97267 0.94236 0.98296 0.90801 0.91618 0.91875 0.91471 0.92001 0.75368 0.76470 0.86792 0.80480 0.93214 0.92273 0.92229 0.85784 0.85953 0.86238 0.85914 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.03 37.16 0.37 -0.87 16 2 C 0.13 1.30 6.42 -4.04 -0.03 1.27 16 3 N -0.73 -8.76 5.50 -65.22 -0.36 -9.12 16 4 C 0.73 10.48 8.67 -86.92 -0.75 9.73 16 5 O -0.60 -10.25 17.16 5.27 0.09 -10.16 16 6 N -0.59 -7.45 6.26 27.64 0.17 -7.28 16 7 N -0.29 -3.77 10.13 32.15 0.33 -3.44 16 8 C 0.19 2.44 10.11 -14.69 -0.15 2.29 16 9 C -0.23 -3.61 6.23 -103.37 -0.64 -4.26 16 10 C 0.11 1.87 11.11 -16.86 -0.19 1.68 16 11 N -0.32 -6.48 3.64 -62.24 -0.23 -6.70 16 12 C 0.25 5.82 6.22 -5.19 -0.03 5.79 16 13 C -0.53 -13.88 9.21 -34.44 -0.32 -14.20 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 17 Si 0.91 20.52 29.54 -169.99 -5.02 15.49 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 N -0.25 -5.14 12.33 34.56 0.43 -4.71 16 22 C 0.11 1.81 6.88 -80.56 -0.55 1.25 16 23 C 0.00 0.06 5.80 -104.91 -0.61 -0.55 16 24 C -0.10 -1.22 8.65 -39.24 -0.34 -1.56 16 25 C -0.12 -1.23 10.03 -39.63 -0.40 -1.62 16 26 C -0.12 -1.18 10.04 -39.51 -0.40 -1.58 16 27 C -0.12 -1.30 10.03 -39.63 -0.40 -1.70 16 28 C -0.09 -1.22 9.78 -39.24 -0.38 -1.60 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 4.63 7.56 -40.82 -0.31 4.32 16 35 H 0.39 4.28 8.76 -182.60 -1.60 2.68 16 36 H 0.11 1.18 6.92 -52.48 -0.36 0.82 16 37 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.12 1.35 7.19 -52.49 -0.38 0.98 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 45 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -30.88 397.55 -10.03 -40.92 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.26 Total: 6.64 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.91 Total: -4.32 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 1.08 Total: -54.56 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.88 -10.03 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920827879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.691 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds