Wall clock time and date at job start Sat Apr 11 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81401 * 109.46611 * 2 1 4 4 C 1.81397 * 107.17180 * 295.33835 * 3 2 1 5 5 O 1.42102 * 113.54301 * 61.54259 * 3 2 1 6 6 N 1.49358 * 107.51845 * 180.02562 * 3 2 1 7 7 C 1.32423 * 119.99790 * 180.02562 * 6 3 2 8 8 O 1.21542 * 119.99986 * 359.97438 * 7 6 3 9 9 C 1.50697 * 120.00163 * 180.02562 * 7 6 3 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.39866 * 126.04042 * 269.69324 * 11 10 9 13 13 C 1.50700 * 125.89742 * 359.97438 * 12 11 10 14 14 N 1.30841 * 108.20120 * 179.82154 * 12 11 10 15 15 N 1.40091 * 108.20334 * 0.43197 * 14 12 11 16 16 C 1.46494 * 126.03243 * 179.74177 * 15 14 12 17 17 C 1.50702 * 109.47382 * 269.97713 * 16 15 14 18 18 H 1.08004 * 119.99628 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00077 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47649 * 90.00142 * 21 19 17 23 23 H 1.48503 * 109.47268 * 209.99890 * 21 19 17 24 24 H 1.48501 * 109.47017 * 330.00009 * 21 19 17 25 25 C 1.34945 * 107.92641 * 359.72330 * 15 14 12 26 26 C 1.50701 * 126.12574 * 179.97438 * 25 15 14 27 27 H 1.09003 * 109.46563 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47265 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.47342 * 60.00228 * 1 2 3 30 30 H 1.09001 * 109.47010 * 240.00535 * 2 1 3 31 31 H 1.09001 * 109.47342 * 119.99772 * 2 1 3 32 32 H 1.09007 * 109.46972 * 306.20176 * 4 3 2 33 33 H 1.08999 * 109.46847 * 66.19473 * 4 3 2 34 34 H 1.08996 * 109.47445 * 186.20241 * 4 3 2 35 35 H 1.09002 * 109.47120 * 59.99546 * 9 7 6 36 36 H 1.08998 * 109.46862 * 300.00348 * 9 7 6 37 37 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 38 38 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 39 39 H 1.08997 * 109.46948 * 90.00645 * 13 12 11 40 40 H 1.08997 * 109.46782 * 210.00112 * 13 12 11 41 41 H 1.08993 * 109.47399 * 330.00134 * 13 12 11 42 42 H 1.08997 * 109.47670 * 29.97655 * 16 15 14 43 43 H 1.09001 * 109.47011 * 149.97772 * 16 15 14 44 44 H 0.97000 * 120.00722 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.46870 * 270.02890 * 26 25 15 46 46 H 1.08996 * 109.46729 * 30.02414 * 26 25 15 47 47 H 1.08999 * 109.46868 * 150.02980 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 1.6137 2.4624 -1.5664 5 8 1.7384 2.4524 1.1453 6 7 3.6273 1.6596 -0.0006 7 6 4.3279 2.7832 -0.0003 8 8 3.7563 3.8558 0.0001 9 6 5.8340 2.7321 -0.0015 10 6 6.3928 4.1564 -0.0014 11 6 7.8989 4.1052 -0.0020 12 6 8.7220 4.0831 1.1287 13 6 8.2558 4.1069 2.5616 14 7 9.9664 4.0349 0.7274 15 7 9.9748 4.0348 -0.6735 16 6 11.1639 3.9942 -1.5282 17 6 11.6201 5.4002 -1.8215 18 1 11.0786 6.2401 -1.4118 19 6 12.7287 5.6144 -2.6127 20 7 13.3877 4.5917 -3.1120 21 14 13.2945 7.3572 -2.9757 22 1 14.2613 7.7907 -1.9353 23 1 13.9497 7.3977 -4.3077 24 1 12.1223 8.2689 -2.9727 25 6 8.6941 4.0784 -1.0966 26 6 8.2323 4.0949 -2.5310 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.9505 1.8420 -2.3970 33 1 0.5267 2.5401 -1.5884 34 1 2.0510 3.4569 -1.6551 35 1 6.1790 2.2069 -0.8921 36 1 6.1804 2.2055 0.8878 37 1 6.0478 4.6820 0.8891 38 1 6.0464 4.6826 -0.8909 39 1 8.1083 3.0856 2.9126 40 1 9.0069 4.5986 3.1798 41 1 7.3153 4.6536 2.6287 42 1 11.9603 3.4530 -1.0173 43 1 10.9224 3.4881 -2.4629 44 1 14.1675 4.7423 -3.6690 45 1 8.1562 5.1259 -2.8763 46 1 8.9500 3.5565 -3.1499 47 1 7.2567 3.6143 -2.6041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925856295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:08 Heat of formation + Delta-G solvation = 23.057830 kcal Electronic energy + Delta-G solvation = -27354.561643 eV Core-core repulsion = 23474.093112 eV Total energy + Delta-G solvation = -3880.468531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.50159 -39.62939 -36.70223 -34.33144 -34.12725 -33.41788 -33.20884 -32.39950 -30.20067 -29.80005 -28.85720 -26.79940 -25.78366 -25.07834 -23.86516 -22.23442 -20.59325 -18.67722 -18.53474 -18.44025 -17.01547 -16.88259 -16.69303 -16.63939 -15.55729 -15.40580 -14.99687 -14.65951 -14.38370 -14.11411 -13.97662 -13.87466 -13.64810 -13.34924 -13.17799 -12.97251 -12.79889 -12.49460 -12.44684 -12.36571 -12.32282 -12.17938 -11.83848 -11.68139 -11.52092 -11.31866 -11.25506 -11.12855 -10.90043 -10.74746 -10.53240 -10.23031 -10.10780 -9.84091 -9.82913 -9.66201 -9.47799 -8.60079 -8.06770 -7.34224 -6.21498 -4.28447 -1.09007 1.90038 2.50950 2.79095 2.89203 3.24797 3.30772 3.35618 3.49482 3.53410 3.69646 3.72380 3.94630 4.27791 4.33323 4.33918 4.42877 4.69498 4.82843 5.03218 5.11960 5.15435 5.28544 5.41745 5.45437 5.58096 5.63242 5.78862 5.91871 6.00431 6.08510 6.13093 6.18311 6.22469 6.37113 6.46328 6.49040 6.65458 6.69519 6.98026 7.11395 7.21708 7.63218 7.71872 7.94520 8.07620 8.16136 8.75269 8.84053 9.37653 10.85962 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022747 B = 0.002146 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.657961 B =13043.767320 C =13488.834535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.495 4.495 3 S 2.284 3.716 4 C -0.628 4.628 5 O -0.923 6.923 6 N -1.124 6.124 7 C 0.548 3.452 8 O -0.575 6.575 9 C -0.102 4.102 10 C -0.018 4.018 11 C -0.264 4.264 12 C 0.051 3.949 13 C -0.065 4.065 14 N -0.298 5.298 15 N -0.326 5.326 16 C 0.257 3.743 17 C -0.533 4.533 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.893 5.893 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.092 3.908 26 C -0.085 4.085 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.267 0.733 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.447 -12.765 1.518 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.632 4.632 3 S 2.482 3.518 4 C -0.783 4.783 5 O -0.908 6.908 6 N -1.034 6.034 7 C 0.336 3.664 8 O -0.456 6.456 9 C -0.145 4.145 10 C -0.057 4.057 11 C -0.277 4.277 12 C -0.113 4.113 13 C -0.124 4.124 14 N -0.122 5.122 15 N -0.106 5.106 16 C 0.139 3.861 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.040 4.040 26 C -0.143 4.143 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.163 0.837 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.107 -12.306 2.404 29.866 hybrid contribution -0.478 1.043 -1.105 1.593 sum -27.584 -11.262 1.299 29.823 Atomic orbital electron populations 1.21834 0.89861 1.06370 1.04181 1.28986 1.05852 1.14394 1.13991 1.13500 0.78430 0.79505 0.80390 1.30077 1.12177 1.15322 1.20696 1.93548 1.85314 1.67399 1.44574 1.70784 1.19876 1.43871 1.68845 1.20224 0.93035 0.81746 0.71367 1.90835 1.72608 1.32422 1.49717 1.21429 0.88421 0.99912 1.04758 1.19519 0.89408 0.94128 1.02644 1.19371 0.95194 1.21771 0.91318 1.21942 0.90905 1.02467 0.95991 1.20030 1.00775 1.01897 0.89661 1.77260 1.19720 1.24851 0.90386 1.49207 1.06148 1.51453 1.03798 1.19628 0.79795 0.98842 0.87791 1.21322 1.12718 0.91571 1.31558 0.91814 1.24926 0.95776 0.97951 0.95204 1.69917 1.19327 1.30245 1.33594 0.86359 0.78976 0.83713 0.77656 1.20337 1.20923 1.19680 1.20752 0.85538 1.01461 0.96218 1.20339 1.00880 1.03086 0.90033 0.88398 0.90089 0.90685 0.83220 0.82846 0.84993 0.85875 0.83697 0.88801 0.88817 0.91366 0.91613 0.91525 0.91651 0.91208 0.93118 0.93125 0.92323 0.90571 0.90990 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.08 9.88 37.16 0.37 0.29 16 2 C -0.49 -0.84 6.80 37.16 0.25 -0.59 16 3 S 2.28 17.27 3.90 -107.50 -0.42 16.85 16 4 C -0.63 -3.11 10.33 101.05 1.04 -2.07 16 5 O -0.92 -12.21 17.28 -51.80 -0.90 -13.11 16 6 N -1.12 -12.76 10.20 30.51 0.31 -12.45 16 7 C 0.55 8.16 7.37 -12.03 -0.09 8.07 16 8 O -0.58 -9.95 13.99 -11.24 -0.16 -10.10 16 9 C -0.10 -1.49 5.76 -27.89 -0.16 -1.65 16 10 C -0.02 -0.29 4.41 -27.88 -0.12 -0.41 16 11 C -0.26 -5.14 5.35 -105.05 -0.56 -5.70 16 12 C 0.05 1.05 7.22 -82.41 -0.59 0.46 16 13 C -0.06 -1.03 10.26 36.01 0.37 -0.66 16 14 N -0.30 -7.20 12.58 33.67 0.42 -6.78 16 15 N -0.33 -7.94 3.60 -58.32 -0.21 -8.15 16 16 C 0.26 6.79 6.00 -5.20 -0.03 6.76 16 17 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 18 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 21 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.09 1.92 6.93 -82.26 -0.57 1.35 16 26 C -0.09 -1.47 9.72 36.01 0.35 -1.12 16 27 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.07 -0.10 7.68 -51.93 -0.40 -0.50 16 30 H 0.15 -0.15 8.14 -51.92 -0.42 -0.58 16 31 H 0.15 0.19 8.14 -51.92 -0.42 -0.23 16 32 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.12 0.24 7.85 -51.92 -0.41 -0.16 16 34 H 0.14 1.16 7.07 -51.93 -0.37 0.80 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.14 7.20 -51.93 -0.37 0.77 16 38 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 42 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.05 1.32 7.05 -51.93 -0.37 0.95 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.25 7.08 -51.93 -0.37 0.89 16 47 H 0.07 1.00 7.77 -51.93 -0.40 0.59 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -40.45 402.92 -6.99 -47.44 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.66 Total: -2.55 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.17 Total: -8.99 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 1.26 Total: -52.20 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.05 Total: -23.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 17.27 SS G_CDS: -0.42 Total: 16.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -40.45 -6.99 -47.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925856295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.495 kcal (2) G-P(sol) polarization free energy of solvation -40.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds