Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81401 * 109.46611 * 2 1 4 4 C 1.81397 * 107.17180 * 295.33835 * 3 2 1 5 5 O 1.42102 * 113.54301 * 61.54259 * 3 2 1 6 6 N 1.49358 * 107.51845 * 180.02562 * 3 2 1 7 7 C 1.32423 * 119.99790 * 180.02562 * 6 3 2 8 8 O 1.21542 * 119.99986 * 359.97438 * 7 6 3 9 9 C 1.50697 * 120.00163 * 180.02562 * 7 6 3 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.39866 * 126.04042 * 269.69324 * 11 10 9 13 13 C 1.50700 * 125.89742 * 359.97438 * 12 11 10 14 14 N 1.30841 * 108.20120 * 179.82154 * 12 11 10 15 15 N 1.40091 * 108.20334 * 0.43197 * 14 12 11 16 16 C 1.46494 * 126.03243 * 179.74177 * 15 14 12 17 17 C 1.50702 * 109.47382 * 269.97713 * 16 15 14 18 18 H 1.08004 * 119.99628 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00077 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47649 * 90.00142 * 21 19 17 23 23 H 1.48503 * 109.47268 * 209.99890 * 21 19 17 24 24 H 1.48501 * 109.47017 * 330.00009 * 21 19 17 25 25 C 1.34945 * 107.92641 * 359.72330 * 15 14 12 26 26 C 1.50701 * 126.12574 * 179.97438 * 25 15 14 27 27 H 1.09003 * 109.46563 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47265 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.47342 * 60.00228 * 1 2 3 30 30 H 1.09001 * 109.47010 * 240.00535 * 2 1 3 31 31 H 1.09001 * 109.47342 * 119.99772 * 2 1 3 32 32 H 1.09007 * 109.46972 * 306.20176 * 4 3 2 33 33 H 1.08999 * 109.46847 * 66.19473 * 4 3 2 34 34 H 1.08996 * 109.47445 * 186.20241 * 4 3 2 35 35 H 1.09002 * 109.47120 * 59.99546 * 9 7 6 36 36 H 1.08998 * 109.46862 * 300.00348 * 9 7 6 37 37 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 38 38 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 39 39 H 1.08997 * 109.46948 * 90.00645 * 13 12 11 40 40 H 1.08997 * 109.46782 * 210.00112 * 13 12 11 41 41 H 1.08993 * 109.47399 * 330.00134 * 13 12 11 42 42 H 1.08997 * 109.47670 * 29.97655 * 16 15 14 43 43 H 1.09001 * 109.47011 * 149.97772 * 16 15 14 44 44 H 0.97000 * 120.00722 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.46870 * 270.02890 * 26 25 15 46 46 H 1.08996 * 109.46729 * 30.02414 * 26 25 15 47 47 H 1.08999 * 109.46868 * 150.02980 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 1.6137 2.4624 -1.5664 5 8 1.7384 2.4524 1.1453 6 7 3.6273 1.6596 -0.0006 7 6 4.3279 2.7832 -0.0003 8 8 3.7563 3.8558 0.0001 9 6 5.8340 2.7321 -0.0015 10 6 6.3928 4.1564 -0.0014 11 6 7.8989 4.1052 -0.0020 12 6 8.7220 4.0831 1.1287 13 6 8.2558 4.1069 2.5616 14 7 9.9664 4.0349 0.7274 15 7 9.9748 4.0348 -0.6735 16 6 11.1639 3.9942 -1.5282 17 6 11.6201 5.4002 -1.8215 18 1 11.0786 6.2401 -1.4118 19 6 12.7287 5.6144 -2.6127 20 7 13.3877 4.5917 -3.1120 21 14 13.2945 7.3572 -2.9757 22 1 14.2613 7.7907 -1.9353 23 1 13.9497 7.3977 -4.3077 24 1 12.1223 8.2689 -2.9727 25 6 8.6941 4.0784 -1.0966 26 6 8.2323 4.0949 -2.5310 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.9505 1.8420 -2.3970 33 1 0.5267 2.5401 -1.5884 34 1 2.0510 3.4569 -1.6551 35 1 6.1790 2.2069 -0.8921 36 1 6.1804 2.2055 0.8878 37 1 6.0478 4.6820 0.8891 38 1 6.0464 4.6826 -0.8909 39 1 8.1083 3.0856 2.9126 40 1 9.0069 4.5986 3.1798 41 1 7.3153 4.6536 2.6287 42 1 11.9603 3.4530 -1.0173 43 1 10.9224 3.4881 -2.4629 44 1 14.1675 4.7423 -3.6690 45 1 8.1562 5.1259 -2.8763 46 1 8.9500 3.5565 -3.1499 47 1 7.2567 3.6143 -2.6041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925856295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = -7.145120 kcal Electronic energy + Delta-G solvation = -27355.871341 eV Core-core repulsion = 23474.093112 eV Total energy + Delta-G solvation = -3881.778229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14831 -40.68570 -37.44561 -36.10777 -34.86912 -34.34857 -34.19305 -34.17686 -31.72531 -30.51604 -30.24485 -28.22814 -27.61460 -25.76212 -24.95401 -23.93143 -21.57985 -20.30219 -20.12026 -19.16327 -18.81141 -17.95003 -17.48386 -17.29976 -17.21229 -16.30663 -16.18958 -16.17983 -15.61010 -15.24378 -14.75141 -14.67005 -14.45246 -14.30654 -14.19123 -14.05275 -13.90440 -13.82627 -13.58299 -13.52451 -13.33940 -13.23262 -13.14239 -12.95738 -12.83055 -12.70609 -12.61853 -12.57652 -12.38631 -12.22177 -11.84236 -11.77470 -11.70143 -11.20200 -10.94943 -10.86208 -10.75104 -10.65389 -9.83023 -9.01327 -8.34307 -6.51946 -1.51962 1.17175 1.26736 1.35450 1.36910 1.48209 1.70454 1.92757 1.95177 2.13988 2.33520 2.94802 3.06055 3.56784 3.78990 3.83724 3.91851 3.95395 4.06168 4.11708 4.25533 4.32365 4.37148 4.42914 4.58705 4.65829 4.69964 4.72827 4.75350 4.80885 4.83082 4.88506 4.90247 4.92001 5.00240 5.03826 5.12347 5.20356 5.31587 5.45952 5.50583 5.56077 5.57172 5.80868 6.04019 6.32783 6.62978 7.04563 7.10709 7.19072 8.71790 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022747 B = 0.002146 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.657961 B =13043.767320 C =13488.834535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.447 4.447 3 S 2.248 3.752 4 C -0.610 4.610 5 O -0.994 6.994 6 N -1.139 6.139 7 C 0.540 3.460 8 O -0.614 6.614 9 C -0.101 4.101 10 C -0.009 4.009 11 C -0.258 4.258 12 C 0.052 3.948 13 C -0.063 4.063 14 N -0.348 5.348 15 N -0.354 5.354 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.046 0.954 19 C 0.021 3.979 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.267 1.267 24 H -0.271 1.271 25 C 0.079 3.921 26 C -0.082 4.082 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.192 0.808 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.019 0.981 43 H 0.049 0.951 44 H 0.274 0.726 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.347 -14.334 0.142 34.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.587 4.587 3 S 2.452 3.548 4 C -0.767 4.767 5 O -0.981 6.981 6 N -1.045 6.045 7 C 0.328 3.672 8 O -0.498 6.498 9 C -0.143 4.143 10 C -0.048 4.048 11 C -0.270 4.270 12 C -0.113 4.113 13 C -0.122 4.122 14 N -0.172 5.172 15 N -0.135 5.135 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.201 1.201 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.050 4.050 26 C -0.140 4.140 27 H 0.143 0.857 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.209 0.791 31 H 0.180 0.820 32 H 0.187 0.813 33 H 0.176 0.824 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.037 0.963 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -29.992 -13.889 1.052 33.068 hybrid contribution 0.190 1.366 -0.678 1.537 sum -29.802 -12.523 0.374 32.328 Atomic orbital electron populations 1.22102 0.88305 1.08129 1.05022 1.28926 1.06609 1.06641 1.16544 1.14356 0.77005 0.83066 0.80381 1.29841 1.14298 1.13874 1.18667 1.93496 1.85667 1.71298 1.47616 1.70459 1.22870 1.42573 1.68560 1.20197 0.93309 0.82327 0.71352 1.90810 1.73305 1.33753 1.51917 1.21319 0.89342 0.98371 1.05285 1.19452 0.87148 0.95709 1.02490 1.19717 0.96540 1.20253 0.90504 1.22731 0.90080 1.00163 0.98283 1.20188 1.01410 1.03626 0.86928 1.77191 1.21955 1.27407 0.90618 1.49011 1.06524 1.53981 1.03941 1.19150 0.80103 0.97584 0.87586 1.21422 1.13472 0.91848 1.32331 0.93570 1.25749 0.95475 1.02114 0.94611 1.69997 1.19642 1.32220 1.33717 0.85351 0.78424 0.78592 0.78080 1.20064 1.19197 1.19528 1.21450 0.84488 1.00749 0.98356 1.20449 1.02372 1.03504 0.87670 0.85694 0.91326 0.88199 0.79050 0.81981 0.81322 0.82358 0.86881 0.87729 0.88829 0.91858 0.91434 0.89354 0.91316 0.89523 0.96259 0.93337 0.91701 0.90416 0.91547 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.66 9.88 71.98 0.71 1.37 16 2 C -0.45 0.45 6.80 71.98 0.49 0.93 16 3 S 2.25 30.78 3.90 -56.49 -0.22 30.56 16 4 C -0.61 -4.39 10.33 113.37 1.17 -3.22 16 5 O -0.99 -27.25 17.28 -133.14 -2.30 -29.55 16 6 N -1.14 -24.98 10.20 -176.98 -1.80 -26.78 16 7 C 0.54 16.18 7.37 88.02 0.65 16.83 16 8 O -0.61 -21.93 13.99 11.99 0.17 -21.76 16 9 C -0.10 -2.92 5.76 29.85 0.17 -2.75 16 10 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 11 C -0.26 -10.14 5.35 -20.14 -0.11 -10.25 16 12 C 0.05 2.17 7.22 43.10 0.31 2.48 16 13 C -0.06 -1.98 10.26 71.24 0.73 -1.25 16 14 N -0.35 -17.45 12.58 -47.39 -0.60 -18.05 16 15 N -0.35 -17.98 3.60 -338.41 -1.22 -19.20 16 16 C 0.27 15.24 6.00 85.63 0.51 15.76 16 17 C -0.55 -32.36 9.39 25.60 0.24 -32.12 16 18 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 19 C 0.02 1.21 5.46 84.65 0.46 1.67 16 20 N -0.92 -53.26 13.29 21.44 0.28 -52.97 16 21 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.08 3.40 6.93 41.41 0.29 3.68 16 26 C -0.08 -2.81 9.72 71.24 0.69 -2.12 16 27 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.10 -0.82 7.68 -2.39 -0.02 -0.84 16 30 H 0.19 -1.64 8.14 -2.39 -0.02 -1.66 16 31 H 0.16 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.16 0.00 7.85 -2.39 -0.02 -0.01 16 34 H 0.11 1.75 7.07 -2.39 -0.02 1.73 16 35 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.06 2.14 7.20 -2.39 -0.02 2.13 16 38 H 0.07 2.19 7.73 -2.39 -0.02 2.18 16 39 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 2.42 7.25 -2.39 -0.02 2.40 16 42 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 2.65 7.05 -2.39 -0.02 2.63 16 44 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.07 2.34 7.08 -2.39 -0.02 2.32 16 47 H 0.11 2.83 7.77 -2.39 -0.02 2.81 16 Total: -1.00 -95.41 402.92 3.75 -91.66 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.95 Total: 8.60 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 6.45 Total: -9.14 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -3.33 Total: -117.00 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -2.13 Total: -51.31 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 30.78 SS G_CDS: -0.22 Total: 30.56 kcal Total: -95.41 3.75 -91.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925856295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.516 kcal (2) G-P(sol) polarization free energy of solvation -95.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds