Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47462 * 2 1 4 4 C 1.46504 * 119.99800 * 270.00170 * 3 2 1 5 5 C 1.50705 * 109.46826 * 269.99485 * 4 3 2 6 6 H 1.08005 * 119.99765 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00070 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00330 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46629 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47112 * 119.99929 * 9 7 5 12 12 H 1.48494 * 109.47027 * 240.00167 * 9 7 5 13 13 C 1.34778 * 120.00209 * 89.99454 * 3 2 1 14 14 O 1.21287 * 119.99804 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00140 * 0.02562 * 13 3 2 16 16 N 1.46892 * 109.47397 * 179.97438 * 15 13 3 17 17 O 1.46304 * 110.99720 * 66.04724 * 16 15 13 18 18 C 1.42905 * 113.99907 * 243.95230 * 17 16 15 19 19 C 1.46899 * 111.00159 * 189.99825 * 16 15 13 20 20 H 1.08997 * 109.46968 * 60.00752 * 19 16 15 21 21 C 1.52995 * 109.47269 * 300.00329 * 19 16 15 22 22 C 1.50706 * 109.47185 * 179.97438 * 19 16 15 23 23 C 1.33637 * 122.75269 * 204.73430 * 22 19 16 24 24 S 1.76198 * 107.92471 * 179.97438 * 23 22 19 25 25 C 1.70975 * 90.28283 * 0.27467 * 24 23 22 26 26 C 1.50700 * 124.91732 * 179.83901 * 25 24 23 27 27 N 1.29026 * 110.16666 * 359.84331 * 25 24 23 28 28 H 1.09001 * 109.47495 * 300.00546 * 1 2 3 29 29 H 1.09007 * 109.46807 * 60.00274 * 1 2 3 30 30 H 1.08996 * 109.47674 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47109 * 239.99638 * 2 1 3 32 32 H 1.08999 * 109.46865 * 120.00046 * 2 1 3 33 33 H 1.08996 * 109.47080 * 29.99600 * 4 3 2 34 34 H 1.09002 * 109.47603 * 150.00200 * 4 3 2 35 35 H 0.97001 * 120.00134 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46981 * 59.99663 * 15 13 3 37 37 H 1.09005 * 109.47161 * 300.00166 * 15 13 3 38 38 H 1.09001 * 109.47103 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47187 * 300.00152 * 18 17 16 40 40 H 1.09001 * 109.46558 * 60.00200 * 18 17 16 41 41 H 1.08999 * 109.47123 * 179.97438 * 21 19 16 42 42 H 1.09000 * 109.46963 * 299.99571 * 21 19 16 43 43 H 1.08994 * 109.47201 * 60.00312 * 21 19 16 44 44 H 1.08001 * 126.03288 * 0.03782 * 23 22 19 45 45 H 1.09008 * 109.46931 * 270.00498 * 26 25 24 46 46 H 1.08997 * 109.47339 * 29.99845 * 26 25 24 47 47 H 1.08991 * 109.47232 * 150.00108 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2300 -1.0961 7 6 4.1493 2.3894 -2.8779 8 7 3.3493 3.1254 -3.6181 9 14 5.9133 2.0952 -3.4175 10 1 6.6009 1.2403 -2.4168 11 1 5.9203 1.4159 -4.7380 12 1 6.6211 3.3961 -3.5263 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2059 3.5888 17 8 1.3881 3.3406 3.6273 18 6 2.0138 4.6063 3.4068 19 6 2.3076 1.4811 4.8665 20 1 3.0525 0.6860 4.8351 21 6 0.9235 0.8743 5.1051 22 6 2.6384 2.4346 5.9858 23 6 3.1727 2.0334 7.1431 24 16 3.3966 3.4555 8.1589 25 6 2.7420 4.4472 6.9295 26 6 2.5679 5.9409 7.0274 27 7 2.4185 3.7315 5.9058 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1385 35 1 3.6752 3.5152 -4.4444 36 1 2.6227 0.4187 2.5299 37 1 0.9443 1.0115 2.5302 38 1 1.2630 5.3953 3.4505 39 1 2.7671 4.7781 4.1757 40 1 2.4884 4.6109 2.4256 41 1 0.9213 0.3361 6.0530 42 1 0.1787 1.6695 5.1366 43 1 0.6848 0.1846 4.2956 44 1 3.4239 1.0170 7.4084 45 1 1.5855 6.1657 7.4427 46 1 3.3399 6.3549 7.6759 47 1 2.6523 6.3823 6.0344 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931539312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = 13.287337 kcal Electronic energy + Delta-G solvation = -28828.369033 eV Core-core repulsion = 24947.476822 eV Total energy + Delta-G solvation = -3880.892211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12493 -40.53581 -38.04908 -36.78713 -35.62105 -34.88822 -33.18695 -31.65161 -31.08306 -29.33112 -28.83095 -27.55659 -26.65821 -25.24836 -24.44859 -23.64931 -22.29625 -20.53397 -19.90437 -18.91625 -18.54283 -17.89470 -17.64526 -16.88374 -16.57028 -16.19348 -16.07438 -15.94333 -15.76079 -15.26217 -14.84082 -14.76667 -14.62941 -14.44552 -14.19989 -14.11490 -13.89987 -13.67749 -13.45848 -13.27644 -13.18028 -13.11716 -12.97793 -12.93681 -12.67733 -12.55692 -12.48062 -12.26939 -12.13818 -11.91709 -11.83560 -11.65395 -10.72875 -10.63411 -10.38250 -10.26383 -10.00374 -9.72588 -9.40374 -9.32722 -8.20172 -6.34851 -0.16227 0.53051 0.82661 1.36165 1.39091 1.50765 1.63574 1.94346 2.02309 2.32935 2.48066 3.08968 3.21401 3.56981 3.76945 4.03563 4.09542 4.15887 4.25342 4.31757 4.40451 4.43701 4.46787 4.50323 4.66746 4.66978 4.68601 4.76518 4.83666 4.91423 4.95377 4.98692 5.02656 5.07333 5.13038 5.23071 5.25890 5.26923 5.37959 5.40253 5.63113 5.73016 5.95319 6.10112 6.19708 6.74289 6.88257 6.99209 7.32275 7.64876 8.86873 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.002968 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.732092 B = 9432.206173 C =10229.653276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.267 3.733 5 C -0.537 4.537 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.498 3.502 14 O -0.570 6.570 15 C 0.037 3.963 16 N -0.362 5.362 17 O -0.245 6.245 18 C 0.059 3.941 19 C 0.141 3.859 20 H 0.136 0.864 21 C -0.165 4.165 22 C 0.063 3.937 23 C -0.258 4.258 24 S 0.141 5.859 25 C 0.025 3.975 26 C -0.078 4.078 27 N -0.472 5.472 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.018 0.982 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.031 0.969 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.204 0.796 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 -6.799 26.116 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.146 3.854 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.286 3.714 14 O -0.449 6.449 15 C -0.094 4.094 16 N -0.130 5.130 17 O -0.250 6.250 18 C -0.039 4.039 19 C 0.030 3.970 20 H 0.153 0.847 21 C -0.224 4.224 22 C -0.069 4.069 23 C -0.397 4.397 24 S 0.396 5.604 25 C -0.253 4.253 26 C -0.138 4.138 27 N -0.187 5.187 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.036 0.964 34 H 0.010 0.990 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.221 0.779 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.058 -5.460 26.468 27.198 hybrid contribution -0.133 -0.346 -1.615 1.657 sum -3.192 -5.806 24.853 25.721 Atomic orbital electron populations 1.22155 0.95031 1.03404 1.01297 1.21739 0.94953 0.81470 1.04047 1.48246 1.64540 1.15111 1.06006 1.18615 0.95157 0.91278 0.80394 1.21748 0.97844 1.31651 1.06298 0.92764 1.25874 1.02367 0.94561 0.96525 1.70071 1.37714 1.34470 1.14817 0.85363 0.79064 0.77931 0.78406 1.18977 1.19396 1.20988 1.21024 0.77524 0.86795 0.86046 1.90543 1.46843 1.20022 1.87489 1.22338 1.03670 0.95526 0.87843 1.67242 1.39562 1.03656 1.02508 1.90487 1.27007 1.13018 1.94516 1.22576 0.98438 0.83200 0.99652 1.20855 0.99333 0.92447 0.84344 0.84700 1.22290 0.95337 1.00752 1.04020 1.20108 1.00781 0.90245 0.95774 1.26993 1.10367 1.05043 0.97289 1.83643 1.58628 0.98029 1.20131 1.27636 1.01680 1.03249 0.92748 1.20547 1.04495 0.84316 1.04427 1.66277 1.19701 1.05782 1.26924 0.92730 0.94598 0.88423 0.90865 0.87907 0.96384 0.99023 0.92532 0.83964 0.89021 0.91040 0.92772 0.95048 0.89631 0.94129 0.90191 0.77928 0.88576 0.88148 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 3.04 5.93 86.38 0.51 3.56 16 3 N -0.61 -26.30 2.46 -826.16 -2.03 -28.33 16 4 C 0.27 14.86 5.16 85.63 0.44 15.30 16 5 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 6 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 9 Si 0.97 45.89 29.54 68.60 2.03 47.91 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.50 21.60 7.58 87.66 0.66 22.26 16 14 O -0.57 -30.65 12.41 9.99 0.12 -30.53 16 15 C 0.04 1.10 3.60 85.56 0.31 1.41 16 16 N -0.36 -11.65 4.30 -499.48 -2.15 -13.80 16 17 O -0.24 -9.15 8.68 -37.13 -0.32 -9.47 16 18 C 0.06 2.27 10.20 113.37 1.16 3.43 16 19 C 0.14 3.20 2.80 44.17 0.12 3.33 16 20 H 0.14 2.29 8.12 -2.39 -0.02 2.27 16 21 C -0.17 -3.06 8.72 71.98 0.63 -2.43 16 22 C 0.06 1.51 5.76 41.52 0.24 1.75 16 23 C -0.26 -4.50 11.14 66.78 0.74 -3.76 16 24 S 0.14 2.26 23.18 -56.49 -1.31 0.96 16 25 C 0.02 0.53 7.39 88.52 0.65 1.18 16 26 C -0.08 -1.21 10.46 71.24 0.75 -0.47 16 27 N -0.47 -12.97 5.76 -179.40 -1.03 -14.01 16 28 H 0.05 1.35 7.22 -2.39 -0.02 1.33 16 29 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 32 H 0.10 2.27 6.44 -2.39 -0.02 2.26 16 33 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 34 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.14 3.20 7.32 -2.38 -0.02 3.18 16 37 H 0.09 2.36 5.93 -2.38 -0.01 2.35 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.05 2.00 5.97 -2.39 -0.01 1.98 16 40 H 0.03 1.47 5.18 -2.39 -0.01 1.46 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 0.99 7.76 -2.39 -0.02 0.97 16 43 H 0.08 1.23 6.63 -2.39 -0.02 1.22 16 44 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.10 1.23 8.14 -2.38 -0.02 1.22 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -82.98 390.07 4.22 -78.76 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.97 Total: 14.32 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 7.66 Total: 11.61 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.93 Total: -113.55 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.20 Total: -40.00 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.96 kcal Total: -82.98 4.22 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931539312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.046 kcal (2) G-P(sol) polarization free energy of solvation -82.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds