Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46965 * 2 1 4 4 C 1.35300 * 126.47299 * 265.04288 * 3 2 1 5 5 N 1.30766 * 108.76603 * 180.27527 * 4 3 2 6 6 C 1.33476 * 109.09889 * 359.64186 * 5 4 3 7 7 C 1.35035 * 108.13037 * 0.26487 * 6 5 4 8 8 C 1.50621 * 124.84360 * 179.97438 * 7 6 5 9 9 C 1.53413 * 108.80398 * 342.34293 * 8 7 6 10 10 N 1.47060 * 109.08753 * 45.07406 * 9 8 7 11 11 C 1.34777 * 120.80412 * 115.69583 * 10 9 8 12 12 O 1.21573 * 120.00384 * 354.90930 * 11 10 9 13 13 N 1.34780 * 119.99481 * 174.90574 * 11 10 9 14 14 C 1.39462 * 119.99866 * 185.95635 * 13 11 10 15 15 C 1.38641 * 119.64833 * 18.32144 * 14 13 11 16 16 C 1.40824 * 118.67363 * 179.72084 * 15 14 13 17 17 C 1.41550 * 120.99576 * 180.30193 * 16 15 14 18 18 H 1.07997 * 119.99336 * 207.12355 * 17 16 15 19 19 C 1.40021 * 120.00379 * 27.11944 * 17 16 15 20 20 N 1.30749 * 120.00187 * 7.94957 * 19 17 16 21 21 Si 1.86800 * 120.00327 * 187.95028 * 19 17 16 22 22 H 1.48500 * 109.46933 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47309 * 119.99755 * 21 19 17 24 24 H 1.48498 * 109.47224 * 240.00035 * 21 19 17 25 25 C 1.41156 * 118.00327 * 0.53976 * 16 15 14 26 26 C 1.36589 * 119.12829 * 359.73925 * 25 16 15 27 27 N 1.32067 * 121.26133 * 359.97438 * 26 25 16 28 28 C 1.47399 * 118.38359 * 295.68248 * 10 9 8 29 29 H 1.09002 * 109.47216 * 60.00255 * 1 2 3 30 30 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47289 * 299.99899 * 1 2 3 32 32 H 1.09006 * 109.46993 * 240.00306 * 2 1 3 33 33 H 1.08992 * 109.47333 * 120.00299 * 2 1 3 34 34 H 1.07993 * 125.61480 * 0.03561 * 4 3 2 35 35 H 1.09001 * 109.58027 * 222.54010 * 8 7 6 36 36 H 1.09004 * 109.69166 * 102.20307 * 8 7 6 37 37 H 1.09002 * 109.53251 * 285.19626 * 9 8 7 38 38 H 1.08990 * 109.53840 * 164.96253 * 9 8 7 39 39 H 0.96995 * 120.00027 * 5.95543 * 13 11 10 40 40 H 1.08007 * 120.66625 * 359.97438 * 15 14 13 41 41 H 0.96995 * 120.00458 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.43660 * 179.75555 * 25 16 15 43 43 H 1.08004 * 119.36984 * 180.02562 * 26 25 16 44 44 H 1.09000 * 109.89072 * 284.84594 * 28 10 9 45 45 H 1.08994 * 109.95808 * 163.76479 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3750 2.1082 -1.0839 5 7 2.7634 3.2921 -0.6872 6 6 2.6618 3.3624 0.6418 7 6 2.1982 2.1764 1.0912 8 6 1.9432 1.8445 2.5381 9 6 2.6888 2.8573 3.4166 10 7 2.4700 4.2100 2.8826 11 6 1.8052 5.1365 3.6011 12 8 1.2982 4.8331 4.6635 13 7 1.7027 6.3994 3.1416 14 6 1.1245 7.3867 3.9390 15 6 1.0067 7.1830 5.3053 16 6 0.4250 8.1960 6.0918 17 6 0.2862 8.0425 7.4921 18 1 -0.5030 8.5607 8.0164 19 6 1.1720 7.2187 8.1973 20 7 2.2175 6.7156 7.5945 21 14 0.8600 6.8383 9.9994 22 1 -0.3801 7.5245 10.4426 23 1 0.7051 5.3720 10.1762 24 1 2.0073 7.3164 10.8120 25 6 -0.0202 9.3669 5.4411 26 6 0.1331 9.4749 4.0882 27 7 0.6887 8.5070 3.3820 28 6 2.9957 4.5278 1.5427 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.3475 1.7656 -2.1077 35 1 2.3058 0.8389 2.7515 36 1 0.8743 1.8989 2.7445 37 1 3.7550 2.6307 3.4094 38 1 2.3103 2.8028 4.4372 39 1 2.0311 6.6216 2.2564 40 1 1.3577 6.2674 5.7580 41 1 2.8314 6.1453 8.0831 42 1 -0.4758 10.1670 6.0057 43 1 -0.2057 10.3693 3.5864 44 1 4.0763 4.6620 1.5905 45 1 2.5258 5.4356 1.1644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932162350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = 87.311797 kcal Electronic energy + Delta-G solvation = -29476.627011 eV Core-core repulsion = 25495.793541 eV Total energy + Delta-G solvation = -3980.833470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50187 -40.07561 -38.11633 -36.27568 -35.34069 -34.38722 -33.61345 -32.04223 -30.47112 -30.37920 -29.49772 -28.27619 -25.83658 -25.56402 -24.01610 -23.75224 -21.96857 -21.26487 -20.86607 -20.13835 -18.78642 -18.14614 -17.28898 -17.14149 -16.06883 -15.94765 -15.34004 -15.27592 -15.03026 -14.74919 -14.43391 -14.27623 -14.13327 -13.81991 -13.59055 -13.39588 -13.17106 -12.89379 -12.73470 -12.67706 -12.47358 -12.28025 -12.21625 -11.94219 -11.75381 -11.34760 -11.31405 -11.08374 -10.85128 -10.36590 -10.07379 -10.05151 -9.75314 -9.68371 -9.28164 -8.97861 -8.51953 -8.28380 -7.98590 -7.77368 -6.87858 -6.59681 -4.45445 1.82135 2.47597 2.74587 2.84177 2.94529 2.97516 3.12381 3.17614 3.30500 3.77402 3.98958 4.15406 4.17937 4.34430 4.43344 4.49629 4.68647 4.79190 4.83536 4.94587 5.06464 5.12663 5.20140 5.27100 5.40652 5.48500 5.59792 5.72754 5.78391 5.81259 5.90332 5.99053 6.16731 6.47001 6.51582 6.62377 6.83450 6.91027 7.00325 7.12018 7.24913 7.33850 7.59966 7.72269 7.91949 8.04868 8.22857 8.48580 8.65412 8.90436 8.99187 9.15131 9.66411 10.27386 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.002964 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.499419 B = 9444.002404 C =10562.122562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.451 5.451 4 C 0.173 3.827 5 N -0.477 5.477 6 C -0.014 4.014 7 C -0.010 4.010 8 C -0.059 4.059 9 C 0.139 3.861 10 N -0.631 5.631 11 C 0.712 3.288 12 O -0.547 6.547 13 N -0.662 5.662 14 C 0.333 3.667 15 C -0.214 4.214 16 C 0.131 3.869 17 C -0.451 4.451 18 H 0.080 0.920 19 C 0.074 3.926 20 N -0.780 5.780 21 Si 0.914 3.086 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.285 4.285 26 C 0.118 3.882 27 N -0.603 5.603 28 C 0.200 3.800 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.205 0.795 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.396 0.604 40 H 0.179 0.821 41 H 0.279 0.721 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -16.498 -12.832 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.134 5.134 4 C -0.108 4.108 5 N -0.195 5.195 6 C -0.144 4.144 7 C -0.125 4.125 8 C -0.098 4.098 9 C 0.015 3.985 10 N -0.371 5.371 11 C 0.413 3.587 12 O -0.421 6.421 13 N -0.310 5.310 14 C 0.110 3.890 15 C -0.239 4.239 16 C 0.122 3.878 17 C -0.482 4.482 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.406 5.406 21 Si 0.738 3.262 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.309 4.309 26 C -0.036 4.036 27 N -0.324 5.324 28 C 0.076 3.924 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.221 0.779 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.233 0.767 40 H 0.195 0.805 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.101 0.899 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.723 -16.311 -13.432 21.305 hybrid contribution -0.310 -0.868 1.298 1.592 sum 2.413 -17.179 -12.134 21.170 Atomic orbital electron populations 1.22161 0.93919 1.03209 1.03564 1.21847 0.95832 0.79896 1.04561 1.45247 1.48743 1.12479 1.06941 1.24945 1.04227 0.88230 0.93423 1.69912 1.20205 1.18418 1.10936 1.20569 1.07466 0.95553 0.90840 1.20830 1.08682 0.92652 0.90364 1.20533 1.02225 0.99774 0.87301 1.21358 0.99500 0.79160 0.98500 1.47286 1.60197 1.12331 1.17256 1.15559 0.79362 0.80164 0.83578 1.90916 1.50397 1.78998 1.21820 1.42325 1.62287 1.06813 1.19551 1.17874 0.95721 0.87437 0.87928 1.22947 1.07606 1.03419 0.89925 1.17833 0.87552 0.88815 0.93551 1.19591 1.12725 1.23897 0.92028 0.90200 1.25951 0.93957 0.93636 1.00992 1.69749 1.09156 1.23833 1.37838 0.86176 0.79383 0.79012 0.81599 1.18471 1.19708 1.19987 1.21634 1.14052 0.99750 0.95509 1.21189 0.96119 0.95023 0.91281 1.66528 1.21535 1.03406 1.40911 1.19732 0.99183 0.93961 0.79554 0.91743 0.90459 0.91597 0.88718 0.89128 0.77890 0.90080 0.89928 0.90976 0.87441 0.76749 0.80476 0.90941 0.88149 0.86018 0.89915 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.10 0.54 6.71 -4.04 -0.03 0.51 16 3 N -0.45 -4.23 2.74 -113.96 -0.31 -4.55 16 4 C 0.17 1.76 12.57 -89.92 -1.13 0.63 16 5 N -0.48 -6.51 11.25 -10.71 -0.12 -6.63 16 6 C -0.01 -0.19 7.08 -82.85 -0.59 -0.77 16 7 C -0.01 -0.11 6.77 -81.82 -0.55 -0.67 16 8 C -0.06 -0.63 6.19 -27.71 -0.17 -0.80 16 9 C 0.14 1.79 6.37 -3.52 -0.02 1.76 16 10 N -0.63 -9.95 2.94 -179.17 -0.53 -10.48 16 11 C 0.71 14.74 8.15 -86.91 -0.71 14.04 16 12 O -0.55 -13.43 12.59 5.30 0.07 -13.36 16 13 N -0.66 -14.16 5.32 -15.86 -0.08 -14.24 16 14 C 0.33 8.56 7.52 -154.68 -1.16 7.39 16 15 C -0.21 -6.05 7.49 -38.46 -0.29 -6.33 16 16 C 0.13 3.70 5.60 -106.55 -0.60 3.10 16 17 C -0.45 -12.41 9.14 -37.65 -0.34 -12.75 16 18 H 0.08 2.09 7.86 -52.49 -0.41 1.67 16 19 C 0.07 1.92 5.34 -17.34 -0.09 1.83 16 20 N -0.78 -21.06 10.67 55.55 0.59 -20.46 16 21 Si 0.91 19.31 29.57 -169.99 -5.03 14.28 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.29 -7.26 9.85 -39.07 -0.38 -7.65 16 26 C 0.12 2.82 11.10 -18.05 -0.20 2.62 16 27 N -0.60 -15.12 10.36 -12.76 -0.13 -15.25 16 28 C 0.20 2.77 6.63 -4.54 -0.03 2.73 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 33 H 0.09 0.40 7.86 -51.93 -0.41 0.00 16 34 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.11 1.54 7.03 -51.93 -0.36 1.18 16 39 H 0.40 7.30 6.45 -40.82 -0.26 7.03 16 40 H 0.18 5.21 3.38 -52.50 -0.18 5.04 16 41 H 0.28 6.88 8.29 -40.82 -0.34 6.54 16 42 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 43 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.27 5.98 -51.93 -0.31 0.96 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -35.29 369.43 -11.61 -46.89 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.71 Total: 13.13 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -5.92 Total: 5.10 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -0.58 Total: -71.61 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.29 -11.61 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.205 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds