Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47195 * 2 1 4 4 C 1.34784 * 119.99659 * 85.15639 * 3 2 1 5 5 O 1.21608 * 119.99499 * 185.60173 * 4 3 2 6 6 C 1.47318 * 119.99885 * 5.60893 * 4 3 2 7 7 C 1.37907 * 126.80624 * 343.41012 * 6 4 3 8 8 N 1.34191 * 107.89860 * 179.97438 * 7 6 4 9 9 H 0.97001 * 125.17357 * 179.97438 * 8 7 6 10 10 N 1.39772 * 109.66799 * 359.97438 * 8 7 6 11 11 C 1.31386 * 109.06627 * 0.02562 * 10 8 7 12 12 C 1.48241 * 126.51287 * 180.02562 * 11 10 8 13 13 C 1.39383 * 119.73154 * 334.70335 * 12 11 10 14 14 C 1.38386 * 119.06460 * 179.73177 * 13 12 11 15 15 C 1.38794 * 118.51634 * 0.52977 * 14 13 12 16 16 C 1.38258 * 119.37327 * 359.73285 * 15 14 13 17 17 N 1.31762 * 120.89647 * 359.97438 * 16 15 14 18 18 C 1.46498 * 120.00317 * 265.16173 * 3 2 1 19 19 C 1.53946 * 113.74103 * 222.37674 * 18 3 2 20 20 N 1.47817 * 86.03421 * 222.08187 * 19 18 3 21 21 C 1.36932 * 134.45415 * 204.63936 * 20 19 18 22 22 H 1.08000 * 120.00063 * 179.86963 * 21 20 19 23 23 C 1.38812 * 120.00355 * 359.87306 * 21 20 19 24 24 N 1.31613 * 119.99948 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00136 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47249 * 59.99779 * 25 23 21 27 27 H 1.48506 * 109.47054 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47213 * 299.99685 * 25 23 21 29 29 C 1.47580 * 91.05188 * 24.54971 * 20 19 18 30 30 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47174 * 299.99639 * 1 2 3 32 32 H 1.08997 * 109.47524 * 59.99532 * 1 2 3 33 33 H 1.08998 * 109.46822 * 240.00488 * 2 1 3 34 34 H 1.08997 * 109.47524 * 120.00468 * 2 1 3 35 35 H 1.08004 * 126.05208 * 359.70052 * 7 6 4 36 36 H 1.08005 * 120.46959 * 359.97438 * 13 12 11 37 37 H 1.08004 * 120.74453 * 180.26087 * 14 13 12 38 38 H 1.08004 * 120.31505 * 179.70791 * 15 14 13 39 39 H 1.08000 * 119.55192 * 179.97438 * 16 15 14 40 40 H 1.09005 * 112.94263 * 353.96533 * 18 3 2 41 41 H 1.08997 * 113.76596 * 336.34239 * 19 18 3 42 42 H 1.08997 * 113.77171 * 107.74404 * 19 18 3 43 43 H 0.96999 * 120.00462 * 179.97438 * 24 23 21 44 44 H 1.08995 * 113.77144 * 221.15484 * 29 20 19 45 45 H 1.08999 * 113.77223 * 89.75006 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1500 2.0494 1.1631 5 8 2.4572 3.2260 1.1569 6 6 1.9220 1.3542 2.4418 7 6 1.2754 0.1498 2.6236 8 7 1.2837 -0.1287 3.9363 9 1 0.8946 -0.9191 4.3423 10 7 1.9384 0.8930 4.6299 11 6 2.3386 1.8053 3.7732 12 6 3.0727 3.0530 4.0920 13 6 2.9523 3.6214 5.3590 14 6 3.6481 4.7832 5.6436 15 6 4.4339 5.3458 4.6474 16 6 4.5034 4.7317 3.4106 17 7 3.8352 3.6225 3.1674 18 6 2.3634 2.0362 -1.2642 19 6 3.6608 2.8624 -1.2002 20 7 2.9305 3.8795 -1.9858 21 6 3.3051 4.8851 -2.8364 22 1 2.5544 5.5080 -3.2999 23 6 4.6497 5.1040 -3.1031 24 7 5.5646 4.3452 -2.5380 25 14 5.1605 6.4753 -4.2640 26 1 4.6837 7.7773 -3.7324 27 1 6.6408 6.5005 -4.3794 28 1 4.5632 6.2387 -5.6029 29 6 1.6364 3.3747 -1.4874 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.8357 -0.4591 1.8475 36 1 2.3277 3.1594 6.1094 37 1 3.5778 5.2444 6.6177 38 1 4.9856 6.2549 4.8364 39 1 5.1137 5.1672 2.6332 40 1 2.3142 1.3621 -2.1193 41 1 3.9239 3.1899 -0.1944 42 1 4.4966 2.4100 -1.7339 43 1 6.5042 4.4978 -2.7246 44 1 0.8589 3.3305 -2.2500 45 1 1.3037 3.8529 -0.5661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950486637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 183.265170 kcal Electronic energy + Delta-G solvation = -30328.741898 eV Core-core repulsion = 26352.069279 eV Total energy + Delta-G solvation = -3976.672619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36763 -39.67794 -39.38324 -36.47989 -35.49035 -32.92047 -32.25500 -32.03148 -30.39283 -30.05906 -29.84148 -27.11785 -24.47178 -24.29687 -23.83986 -23.35693 -23.18451 -21.80526 -20.73397 -19.99065 -18.71324 -17.38817 -16.73869 -16.58777 -16.19235 -15.81946 -15.54845 -15.22828 -14.94612 -14.64543 -14.56648 -14.22889 -13.72392 -13.59269 -13.53224 -13.30233 -12.97725 -12.70871 -12.33709 -12.28428 -12.14728 -11.67330 -11.50428 -11.36712 -11.15540 -11.07180 -10.99340 -10.72068 -10.51422 -10.24132 -9.92525 -9.83410 -9.65912 -9.29121 -9.15693 -8.95171 -8.84245 -8.45049 -8.41363 -7.82905 -6.58468 -5.55777 -2.85494 0.86500 1.48277 1.56281 2.35220 2.52696 3.45036 3.51336 3.55274 3.56860 3.85612 4.05701 4.13971 4.47340 4.64969 4.80844 4.86267 4.98219 5.04287 5.10531 5.16257 5.20712 5.26161 5.38761 5.43805 5.50693 5.62393 5.65007 5.71225 5.78552 5.88624 5.91077 6.01635 6.11131 6.17264 6.22029 6.33897 6.54682 6.80544 6.83605 6.87768 6.95977 7.20965 7.35019 7.51121 7.77779 7.90700 8.08263 8.19206 8.29025 8.99529 9.25497 9.91466 10.85378 11.61356 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004328 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.899334 B = 6467.265144 C = 8786.698909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.085 3.915 3 N -0.603 5.603 4 C 0.579 3.421 5 O -0.477 6.477 6 C -0.241 4.241 7 C 0.064 3.936 8 N -0.468 5.468 9 H 0.442 0.558 10 N -0.280 5.280 11 C 0.171 3.829 12 C 0.189 3.811 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.167 4.167 16 C 0.113 3.887 17 N -0.411 5.411 18 C 0.094 3.906 19 C 0.157 3.843 20 N -0.604 5.604 21 C -0.213 4.213 22 H 0.076 0.924 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.908 3.092 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.113 3.887 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.211 0.789 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.251 0.749 44 H 0.031 0.969 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 -11.832 15.904 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.039 4.039 3 N -0.338 5.338 4 C 0.365 3.635 5 O -0.348 6.348 6 C -0.257 4.257 7 C -0.083 4.083 8 N -0.175 5.175 9 H 0.286 0.714 10 N -0.103 5.103 11 C 0.003 3.997 12 C 0.050 3.950 13 C -0.168 4.168 14 C -0.112 4.112 15 C -0.187 4.187 16 C -0.046 4.046 17 N -0.120 5.120 18 C -0.009 4.009 19 C 0.031 3.969 20 N -0.331 5.331 21 C -0.341 4.341 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.739 3.261 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.014 4.014 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.227 0.773 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.867 -11.701 16.071 21.768 hybrid contribution -0.086 0.847 -0.422 0.950 sum -8.953 -10.855 15.649 21.045 Atomic orbital electron populations 1.22449 0.96562 1.01862 1.03518 1.21987 0.93805 0.84800 1.03311 1.47886 1.66286 1.12895 1.06752 1.17013 0.78370 0.86470 0.81602 1.90890 1.43704 1.14307 1.85935 1.21585 1.11811 0.97582 0.94684 1.24363 0.99316 0.97258 0.87361 1.45962 1.46226 1.20173 1.05114 0.71415 1.77192 1.15580 0.98473 1.19052 1.21306 0.95881 0.92758 0.89788 1.18353 0.95327 0.91599 0.89724 1.21998 1.00906 0.96916 0.97015 1.21427 0.95380 0.94932 0.99508 1.22306 1.00183 1.01311 0.94937 1.22896 0.95392 0.90784 0.95540 1.67794 1.03614 1.09497 1.31057 1.23989 1.00641 0.92991 0.83327 1.22756 0.91891 0.86043 0.96207 1.45664 1.00985 1.36920 1.49489 1.18918 0.91370 1.07082 1.16760 0.90642 1.24727 0.95531 0.99584 1.00662 1.69831 0.99719 1.40576 1.46533 0.86263 0.77277 0.81977 0.80623 1.21380 1.21692 1.21310 1.22923 0.90568 0.91382 0.96558 0.91683 0.92117 0.91172 0.90057 0.90171 0.77343 0.84839 0.84888 0.84773 0.82107 0.88299 0.91917 0.91991 0.93877 0.95067 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.85 37.16 0.33 -1.26 16 2 C 0.09 0.92 5.65 -4.04 -0.02 0.89 16 3 N -0.60 -9.93 2.74 -169.21 -0.46 -10.39 16 4 C 0.58 10.78 6.95 -12.56 -0.09 10.69 16 5 O -0.48 -10.91 9.93 5.27 0.05 -10.86 16 6 C -0.24 -3.72 6.09 -102.95 -0.63 -4.35 16 7 C 0.06 0.66 8.82 -16.64 -0.15 0.51 16 8 N -0.47 -4.37 7.20 30.81 0.22 -4.15 16 9 H 0.44 2.19 8.96 -182.84 -1.64 0.55 16 10 N -0.28 -3.72 12.54 34.57 0.43 -3.29 16 11 C 0.17 2.73 7.11 -80.57 -0.57 2.16 16 12 C 0.19 3.16 6.57 -82.96 -0.54 2.61 16 13 C -0.15 -1.97 9.75 -39.10 -0.38 -2.36 16 14 C -0.09 -1.01 10.16 -39.32 -0.40 -1.41 16 15 C -0.17 -2.10 10.11 -39.37 -0.40 -2.50 16 16 C 0.11 1.84 11.17 -17.57 -0.20 1.64 16 17 N -0.41 -7.77 7.53 -9.79 -0.07 -7.85 16 18 C 0.09 1.89 4.60 -70.15 -0.32 1.57 16 19 C 0.16 4.05 6.78 -2.84 -0.02 4.03 16 20 N -0.60 -16.78 3.70 -177.89 -0.66 -17.44 16 21 C -0.21 -6.37 10.70 -15.06 -0.16 -6.53 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -28.62 11.39 55.49 0.63 -27.99 16 25 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C 0.11 2.59 8.27 -2.97 -0.02 2.56 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.55 6.60 -51.93 -0.34 0.20 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.08 0.73 4.57 -51.93 -0.24 0.49 16 35 H 0.21 1.44 3.43 -52.48 -0.18 1.26 16 36 H 0.13 1.53 8.04 -52.48 -0.42 1.11 16 37 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 40 H 0.10 1.83 7.92 -51.93 -0.41 1.41 16 41 H 0.06 1.78 5.69 -51.93 -0.30 1.48 16 42 H 0.06 1.74 7.17 -51.93 -0.37 1.37 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 1.22 6.32 -51.93 -0.33 0.89 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -38.92 364.31 -9.78 -48.70 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.72 Total: 1.73 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -3.67 Total: 7.93 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: 0.09 Total: -71.10 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.05 Total: -10.86 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.92 -9.78 -48.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950486637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.963 kcal (2) G-P(sol) polarization free energy of solvation -38.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds