Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47195 * 2 1 4 4 C 1.34784 * 119.99659 * 85.15639 * 3 2 1 5 5 O 1.21608 * 119.99499 * 185.60173 * 4 3 2 6 6 C 1.47318 * 119.99885 * 5.60893 * 4 3 2 7 7 C 1.37907 * 126.80624 * 343.41012 * 6 4 3 8 8 N 1.34191 * 107.89860 * 179.97438 * 7 6 4 9 9 H 0.97001 * 125.17357 * 179.97438 * 8 7 6 10 10 N 1.39772 * 109.66799 * 359.97438 * 8 7 6 11 11 C 1.31386 * 109.06627 * 0.02562 * 10 8 7 12 12 C 1.48241 * 126.51287 * 180.02562 * 11 10 8 13 13 C 1.39383 * 119.73154 * 334.70335 * 12 11 10 14 14 C 1.38386 * 119.06460 * 179.73177 * 13 12 11 15 15 C 1.38794 * 118.51634 * 0.52977 * 14 13 12 16 16 C 1.38258 * 119.37327 * 359.73285 * 15 14 13 17 17 N 1.31762 * 120.89647 * 359.97438 * 16 15 14 18 18 C 1.46498 * 120.00317 * 265.16173 * 3 2 1 19 19 C 1.53946 * 113.74103 * 222.37674 * 18 3 2 20 20 N 1.47817 * 86.03421 * 222.08187 * 19 18 3 21 21 C 1.36932 * 134.45415 * 204.63936 * 20 19 18 22 22 H 1.08000 * 120.00063 * 179.86963 * 21 20 19 23 23 C 1.38812 * 120.00355 * 359.87306 * 21 20 19 24 24 N 1.31613 * 119.99948 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00136 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47249 * 59.99779 * 25 23 21 27 27 H 1.48506 * 109.47054 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47213 * 299.99685 * 25 23 21 29 29 C 1.47580 * 91.05188 * 24.54971 * 20 19 18 30 30 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47174 * 299.99639 * 1 2 3 32 32 H 1.08997 * 109.47524 * 59.99532 * 1 2 3 33 33 H 1.08998 * 109.46822 * 240.00488 * 2 1 3 34 34 H 1.08997 * 109.47524 * 120.00468 * 2 1 3 35 35 H 1.08004 * 126.05208 * 359.70052 * 7 6 4 36 36 H 1.08005 * 120.46959 * 359.97438 * 13 12 11 37 37 H 1.08004 * 120.74453 * 180.26087 * 14 13 12 38 38 H 1.08004 * 120.31505 * 179.70791 * 15 14 13 39 39 H 1.08000 * 119.55192 * 179.97438 * 16 15 14 40 40 H 1.09005 * 112.94263 * 353.96533 * 18 3 2 41 41 H 1.08997 * 113.76596 * 336.34239 * 19 18 3 42 42 H 1.08997 * 113.77171 * 107.74404 * 19 18 3 43 43 H 0.96999 * 120.00462 * 179.97438 * 24 23 21 44 44 H 1.08995 * 113.77144 * 221.15484 * 29 20 19 45 45 H 1.08999 * 113.77223 * 89.75006 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1500 2.0494 1.1631 5 8 2.4572 3.2260 1.1569 6 6 1.9220 1.3542 2.4418 7 6 1.2754 0.1498 2.6236 8 7 1.2837 -0.1287 3.9363 9 1 0.8946 -0.9191 4.3423 10 7 1.9384 0.8930 4.6299 11 6 2.3386 1.8053 3.7732 12 6 3.0727 3.0530 4.0920 13 6 2.9523 3.6214 5.3590 14 6 3.6481 4.7832 5.6436 15 6 4.4339 5.3458 4.6474 16 6 4.5034 4.7317 3.4106 17 7 3.8352 3.6225 3.1674 18 6 2.3634 2.0362 -1.2642 19 6 3.6608 2.8624 -1.2002 20 7 2.9305 3.8795 -1.9858 21 6 3.3051 4.8851 -2.8364 22 1 2.5544 5.5080 -3.2999 23 6 4.6497 5.1040 -3.1031 24 7 5.5646 4.3452 -2.5380 25 14 5.1605 6.4753 -4.2640 26 1 4.6837 7.7773 -3.7324 27 1 6.6408 6.5005 -4.3794 28 1 4.5632 6.2387 -5.6029 29 6 1.6364 3.3747 -1.4874 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.8357 -0.4591 1.8475 36 1 2.3277 3.1594 6.1094 37 1 3.5778 5.2444 6.6177 38 1 4.9856 6.2549 4.8364 39 1 5.1137 5.1672 2.6332 40 1 2.3142 1.3621 -2.1193 41 1 3.9239 3.1899 -0.1944 42 1 4.4966 2.4100 -1.7339 43 1 6.5042 4.4978 -2.7246 44 1 0.8589 3.3305 -2.2500 45 1 1.3037 3.8529 -0.5661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950486637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = 154.585684 kcal Electronic energy + Delta-G solvation = -30329.985534 eV Core-core repulsion = 26352.069279 eV Total energy + Delta-G solvation = -3977.916255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.40715 -40.94449 -40.68303 -38.23951 -36.71551 -34.18872 -33.94781 -33.31974 -31.70534 -31.11377 -30.86171 -29.10623 -26.46369 -25.64958 -25.10762 -24.54693 -24.33438 -22.94221 -22.14051 -21.22076 -20.10416 -18.68038 -18.50397 -17.76647 -17.49583 -16.95581 -16.94839 -16.60864 -16.39575 -16.19848 -15.70658 -15.60476 -15.38173 -14.84260 -14.66947 -14.54118 -14.17687 -13.98293 -13.95095 -13.58776 -13.29701 -13.17842 -12.90662 -12.73972 -12.68144 -12.62794 -12.45909 -12.16891 -12.01891 -11.88084 -11.69111 -11.38798 -11.20906 -10.91895 -10.74412 -10.34905 -10.12028 -9.89331 -9.52976 -9.26869 -8.79672 -7.84085 -5.17175 -0.21352 0.41848 0.60205 1.23248 1.43436 1.49107 1.54919 1.67671 2.16995 2.52741 2.58817 3.00787 3.05246 3.34364 3.53738 3.60801 3.79044 3.93435 4.00863 4.02188 4.09403 4.16984 4.21490 4.26433 4.40519 4.42952 4.45653 4.62256 4.65898 4.71097 4.81737 4.92422 4.96581 5.01860 5.08823 5.14334 5.19742 5.26711 5.31300 5.45503 5.50065 5.58799 5.78134 5.97452 6.07840 6.20328 6.41459 6.78015 6.96479 7.16920 7.64923 7.66420 8.65674 9.32890 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.004328 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.899334 B = 6467.265144 C = 8786.698909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 N -0.603 5.603 4 C 0.572 3.428 5 O -0.533 6.533 6 C -0.288 4.288 7 C 0.109 3.891 8 N -0.440 5.440 9 H 0.465 0.535 10 N -0.284 5.284 11 C 0.147 3.853 12 C 0.158 3.842 13 C -0.144 4.144 14 C -0.076 4.076 15 C -0.155 4.155 16 C 0.076 3.924 17 N -0.460 5.460 18 C 0.132 3.868 19 C 0.157 3.843 20 N -0.632 5.632 21 C -0.235 4.235 22 H 0.080 0.920 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.981 3.019 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.270 1.270 29 C 0.116 3.884 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.250 0.750 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.247 0.753 44 H 0.052 0.948 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 -14.017 17.179 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.047 4.047 3 N -0.337 5.337 4 C 0.360 3.640 5 O -0.409 6.409 6 C -0.303 4.303 7 C -0.040 4.040 8 N -0.150 5.150 9 H 0.315 0.685 10 N -0.108 5.108 11 C -0.021 4.021 12 C 0.020 3.980 13 C -0.165 4.165 14 C -0.102 4.102 15 C -0.176 4.176 16 C -0.082 4.082 17 N -0.169 5.169 18 C 0.027 3.973 19 C 0.031 3.969 20 N -0.358 5.358 21 C -0.364 4.364 22 H 0.098 0.902 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.809 3.191 26 H -0.208 1.208 27 H -0.218 1.218 28 H -0.196 1.196 29 C -0.010 4.010 30 H 0.128 0.872 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.265 0.735 36 H 0.173 0.827 37 H 0.197 0.803 38 H 0.184 0.816 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.275 -13.964 17.388 24.989 hybrid contribution 0.580 1.447 -0.707 1.713 sum -10.695 -12.517 16.680 23.437 Atomic orbital electron populations 1.22420 0.94211 1.04489 1.02733 1.22427 0.95625 0.81369 1.05234 1.47856 1.66069 1.15016 1.04732 1.17577 0.77210 0.86128 0.83040 1.90863 1.46178 1.16975 1.86854 1.21377 1.15662 1.00098 0.93177 1.24710 0.96122 0.95056 0.88156 1.46020 1.44278 1.19868 1.04798 0.68545 1.77129 1.15884 0.98746 1.19006 1.21432 0.96777 0.93312 0.90539 1.18747 0.95912 0.92647 0.90725 1.22304 1.00817 0.97286 0.96120 1.21938 0.93489 0.93899 1.00828 1.22563 0.99868 1.01751 0.93375 1.22865 0.96564 0.91621 0.97141 1.67638 1.05225 1.10969 1.33080 1.23287 0.95578 0.92504 0.85895 1.22494 0.93561 0.87249 0.93578 1.46093 1.03328 1.36977 1.49412 1.19373 0.91959 1.07889 1.17145 0.90247 1.25653 0.95431 1.02251 1.02679 1.70068 0.99618 1.42315 1.48151 0.85124 0.76536 0.78641 0.78841 1.20844 1.21805 1.19583 1.22933 0.89588 0.92585 0.95901 0.87187 0.92451 0.92575 0.88408 0.88023 0.73452 0.82690 0.80325 0.81579 0.84211 0.85671 0.95340 0.95268 0.94463 0.92984 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.85 71.98 0.64 -1.69 16 2 C 0.08 1.38 5.65 86.38 0.49 1.87 16 3 N -0.60 -19.78 2.74 -807.50 -2.21 -21.99 16 4 C 0.57 22.16 6.95 86.63 0.60 22.76 16 5 O -0.53 -26.52 9.93 -4.06 -0.04 -26.56 16 6 C -0.29 -8.81 6.09 -18.78 -0.11 -8.93 16 7 C 0.11 1.90 8.82 84.25 0.74 2.64 16 8 N -0.44 -6.68 7.20 -56.44 -0.41 -7.09 16 9 H 0.46 2.44 8.96 -213.53 -1.91 0.52 16 10 N -0.28 -7.08 12.54 -44.55 -0.56 -7.64 16 11 C 0.15 4.74 7.11 44.06 0.31 5.05 16 12 C 0.16 5.56 6.57 41.95 0.28 5.83 16 13 C -0.14 -3.82 9.75 22.58 0.22 -3.60 16 14 C -0.08 -1.66 10.16 22.44 0.23 -1.43 16 15 C -0.16 -3.97 10.11 22.41 0.23 -3.75 16 16 C 0.08 2.77 11.17 84.71 0.95 3.71 16 17 N -0.46 -19.10 7.53 -184.89 -1.39 -20.49 16 18 C 0.13 5.43 4.60 46.75 0.21 5.64 16 19 C 0.16 8.70 6.78 86.44 0.59 9.29 16 20 N -0.63 -36.82 3.70 -716.71 -2.65 -39.47 16 21 C -0.24 -14.58 10.70 84.03 0.90 -13.68 16 22 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.95 -62.49 11.39 21.65 0.25 -62.24 16 25 Si 0.98 49.03 29.55 68.60 2.03 51.06 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 29 C 0.12 5.51 8.27 86.49 0.72 6.23 16 30 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.80 6.60 -2.38 -0.02 0.79 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.54 7.89 -2.39 -0.02 1.52 16 34 H 0.10 1.43 4.57 -2.39 -0.01 1.42 16 35 H 0.25 2.14 3.43 -2.91 -0.01 2.13 16 36 H 0.16 3.30 8.04 -2.91 -0.02 3.28 16 37 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.14 5.30 8.06 -2.91 -0.02 5.28 16 40 H 0.13 4.49 7.92 -2.38 -0.02 4.47 16 41 H 0.03 1.79 5.69 -2.39 -0.01 1.78 16 42 H 0.03 1.76 7.17 -2.39 -0.02 1.75 16 43 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.03 1.57 6.32 -2.39 -0.02 1.55 16 Total: -1.00 -95.78 364.31 1.60 -94.18 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.86 Total: 13.97 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 7.45 Total: 26.26 kcal Atomic # 7 Polarization: -151.95 SS G_CDS: -6.98 Total: -158.92 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.56 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.03 Total: 51.06 kcal Total: -95.78 1.60 -94.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950486637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.769 kcal (2) G-P(sol) polarization free energy of solvation -95.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds