Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47057 * 2 1 4 4 C 1.34772 * 119.99916 * 274.77565 * 3 2 1 5 5 O 1.21562 * 119.99654 * 183.07146 * 4 3 2 6 6 C 1.47831 * 120.00282 * 3.06745 * 4 3 2 7 7 N 1.34571 * 126.02153 * 5.55021 * 6 4 3 8 8 C 1.30878 * 107.28749 * 179.97438 * 7 6 4 9 9 N 1.34882 * 107.59014 * 359.97438 * 8 7 6 10 10 C 1.40144 * 125.76695 * 179.97438 * 9 8 7 11 11 C 1.38845 * 120.07138 * 359.73165 * 10 9 8 12 12 C 1.38113 * 119.93491 * 179.72149 * 11 10 9 13 13 C 1.38288 * 120.06308 * 0.55247 * 12 11 10 14 14 C 1.38279 * 120.13935 * 359.72309 * 13 12 11 15 15 C 1.38116 * 120.06701 * 359.97438 * 14 13 12 16 16 N 1.28853 * 108.45817 * 359.73722 * 9 8 7 17 17 C 1.46493 * 119.99855 * 94.77950 * 3 2 1 18 18 C 1.53498 * 114.20574 * 231.72115 * 17 3 2 19 19 N 1.47075 * 87.98586 * 220.14524 * 18 17 3 20 20 C 1.36934 * 136.05878 * 207.08304 * 19 18 17 21 21 H 1.07997 * 119.99717 * 354.70862 * 20 19 18 22 22 C 1.38804 * 120.00047 * 174.70734 * 20 19 18 23 23 N 1.31617 * 120.00088 * 183.81119 * 22 20 19 24 24 Si 1.86800 * 119.99998 * 3.80706 * 22 20 19 25 25 H 1.48502 * 109.47324 * 174.24985 * 24 22 20 26 26 H 1.48496 * 109.47334 * 294.25353 * 24 22 20 27 27 H 1.48506 * 109.47042 * 54.25556 * 24 22 20 28 28 C 1.47073 * 87.88110 * 27.34008 * 19 18 17 29 29 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47056 * 299.99498 * 1 2 3 31 31 H 1.08997 * 109.47111 * 59.99571 * 1 2 3 32 32 H 1.09001 * 109.47056 * 240.00502 * 2 1 3 33 33 H 1.08997 * 109.47111 * 120.00429 * 2 1 3 34 34 H 1.08002 * 126.20272 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.03260 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.96950 * 180.29661 * 12 11 10 37 37 H 1.08004 * 119.93312 * 179.74586 * 13 12 11 38 38 H 1.07994 * 119.96817 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.03618 * 180.02562 * 15 14 13 40 40 H 1.09003 * 113.28547 * 4.78815 * 17 3 2 41 41 H 1.09005 * 113.46947 * 105.36874 * 18 17 3 42 42 H 1.08999 * 113.46873 * 334.92617 * 18 17 3 43 43 H 0.96998 * 119.99917 * 5.00753 * 23 22 20 44 44 H 1.08997 * 113.46536 * 87.43699 * 28 19 18 45 45 H 1.08994 * 113.46298 * 217.87222 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1513 2.0489 -1.1631 5 8 2.6090 3.1751 -1.1685 6 6 1.7407 1.4119 -2.4323 7 7 1.1268 0.2209 -2.5577 8 6 0.9342 0.0153 -3.8358 9 7 1.4292 1.0803 -4.4992 10 6 1.4224 1.2547 -5.8897 11 6 0.8765 0.2773 -6.7108 12 6 0.8661 0.4547 -8.0805 13 6 1.4090 1.5993 -8.6349 14 6 1.9586 2.5721 -7.8201 15 6 1.9663 2.4032 -6.4493 16 7 1.9047 1.9124 -3.6379 17 6 2.3621 2.0366 1.2643 18 6 1.6935 3.4034 1.4669 19 7 2.9622 3.8814 2.0370 20 6 3.3389 4.8429 2.9362 21 1 2.6028 5.5216 3.3410 22 6 4.6667 4.9453 3.3275 23 7 5.0163 5.8194 4.2473 24 14 5.9576 3.8423 2.5486 25 1 7.3046 4.2397 3.0312 26 1 5.6939 2.4301 2.9242 27 1 5.9005 3.9806 1.0711 28 6 3.6489 2.8765 1.2113 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.4635 -0.8499 -4.2789 35 1 0.4566 -0.6191 -6.2787 36 1 0.4373 -0.3031 -8.7194 37 1 1.4035 1.7340 -9.7065 38 1 2.3815 3.4651 -8.2560 39 1 2.3953 3.1635 -5.8135 40 1 2.2929 1.3730 2.1263 41 1 0.8746 3.3837 2.1861 42 1 1.4237 3.8972 0.5334 43 1 4.3375 6.3409 4.7036 44 1 3.8945 3.2315 0.2104 45 1 4.4958 2.4081 1.7126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950582242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 166.983723 kcal Electronic energy + Delta-G solvation = -29337.831450 eV Core-core repulsion = 25360.452814 eV Total energy + Delta-G solvation = -3977.378636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.82220 -41.78120 -40.21632 -38.99227 -37.00055 -35.53297 -34.52714 -33.27762 -31.94037 -31.40859 -30.77618 -29.51130 -27.12348 -26.65031 -25.05993 -24.48622 -24.21173 -22.89620 -22.45422 -21.75145 -20.59295 -19.65144 -19.39546 -18.24863 -17.85290 -17.65160 -17.23621 -16.79806 -16.59911 -16.47673 -15.86270 -15.54408 -15.33368 -15.18038 -15.14425 -14.84888 -14.45124 -14.43673 -14.08564 -13.87192 -13.50304 -13.25463 -13.21478 -13.03345 -12.69718 -12.59392 -12.52411 -12.35217 -12.15725 -12.08366 -11.70179 -11.49297 -11.41369 -11.16635 -11.13066 -11.03764 -10.91902 -10.07832 -9.69744 -9.52455 -9.19078 -8.68528 -5.51286 -0.44760 0.27852 0.52537 0.99370 1.16969 1.31481 1.45476 1.64761 1.73538 2.10425 2.48132 2.71135 2.83539 3.01273 3.15945 3.25181 3.50557 3.59493 3.85350 3.87604 4.06257 4.16786 4.19609 4.32861 4.36192 4.38641 4.50241 4.52548 4.57884 4.66089 4.71063 4.71587 4.79835 4.85467 4.97162 4.98845 5.08571 5.17461 5.21940 5.29035 5.32035 5.46520 5.50692 5.65115 5.70504 5.89486 5.91531 6.22931 6.65735 6.76205 7.01499 7.26803 8.22579 8.86218 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.002730 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.461189 B =10254.442134 C =11282.247269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.100 3.900 3 N -0.575 5.575 4 C 0.599 3.401 5 O -0.549 6.549 6 C 0.140 3.860 7 N -0.469 5.469 8 C 0.207 3.793 9 N -0.250 5.250 10 C 0.095 3.905 11 C -0.110 4.110 12 C -0.092 4.092 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.132 4.132 16 N -0.290 5.290 17 C 0.136 3.864 18 C 0.115 3.885 19 N -0.649 5.649 20 C -0.288 4.288 21 H 0.052 0.948 22 C -0.080 4.080 23 N -0.967 5.967 24 Si 1.111 2.889 25 H -0.298 1.298 26 H -0.256 1.256 27 H -0.289 1.289 28 C 0.068 3.932 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.286 0.714 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.248 0.752 44 H 0.060 0.940 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -24.401 -30.520 41.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 N -0.307 5.307 4 C 0.384 3.616 5 O -0.425 6.425 6 C -0.139 4.139 7 N -0.194 5.194 8 C -0.085 4.085 9 N -0.039 5.039 10 C 0.005 3.995 11 C -0.130 4.130 12 C -0.110 4.110 13 C -0.126 4.126 14 C -0.126 4.126 15 C -0.152 4.152 16 N -0.129 5.129 17 C 0.032 3.968 18 C -0.012 4.012 19 N -0.378 5.378 20 C -0.415 4.415 21 H 0.070 0.930 22 C -0.272 4.272 23 N -0.613 5.613 24 Si 0.938 3.062 25 H -0.225 1.225 26 H -0.182 1.182 27 H -0.215 1.215 28 C -0.057 4.057 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.301 0.699 35 H 0.190 0.810 36 H 0.192 0.808 37 H 0.178 0.822 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.173 0.827 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.770 -23.545 -30.120 40.002 hybrid contribution -1.588 1.717 0.379 2.369 sum -13.358 -21.829 -29.741 39.236 Atomic orbital electron populations 1.21978 0.94482 1.03195 1.00753 1.22177 0.95927 0.78879 1.05074 1.47781 1.63273 1.15814 1.03819 1.16795 0.78348 0.84315 0.82146 1.90836 1.45217 1.20069 1.86371 1.23432 1.05005 0.93120 0.92313 1.71573 1.17371 1.13678 1.16803 1.27803 0.98492 0.95146 0.87061 1.44752 1.38991 1.13664 1.06444 1.18092 1.05639 0.99058 0.76685 1.21299 0.99536 0.98228 0.93960 1.21536 0.97615 0.98379 0.93504 1.21792 0.95814 0.93168 1.01863 1.21362 0.98975 1.00872 0.91419 1.21104 1.00409 0.96635 0.97017 1.74345 1.19268 1.19467 0.99771 1.23241 0.94770 0.92793 0.86025 1.22759 0.90127 0.92328 0.96003 1.45925 1.05179 1.40910 1.45782 1.20034 0.95630 1.09595 1.16258 0.92974 1.26940 0.98946 1.01959 0.99378 1.71008 1.35212 1.27267 1.27775 0.83211 0.73355 0.74874 0.74718 1.22548 1.18223 1.21546 1.23576 0.96579 0.89890 0.95687 0.89053 0.93896 0.93623 0.87662 0.88345 0.69926 0.81021 0.80772 0.82199 0.83698 0.87175 0.82742 0.92406 0.94917 0.94340 0.92293 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.63 71.98 0.69 -2.06 16 2 C 0.10 2.15 5.72 86.38 0.49 2.65 16 3 N -0.58 -18.47 2.77 -800.04 -2.21 -20.69 16 4 C 0.60 22.69 7.13 86.78 0.62 23.31 16 5 O -0.55 -26.38 12.62 -3.91 -0.05 -26.43 16 6 C 0.14 4.37 7.43 137.09 1.02 5.39 16 7 N -0.47 -10.07 6.25 -192.79 -1.21 -11.28 16 8 C 0.21 2.94 11.93 180.20 2.15 5.09 16 9 N -0.25 -5.23 3.52 -191.15 -0.67 -5.90 16 10 C 0.10 1.53 6.67 38.11 0.25 1.78 16 11 C -0.11 -0.70 9.45 22.39 0.21 -0.48 16 12 C -0.09 -0.31 10.04 22.25 0.22 -0.09 16 13 C -0.11 -0.62 10.04 22.29 0.22 -0.40 16 14 C -0.11 -1.25 10.04 22.25 0.22 -1.02 16 15 C -0.13 -2.44 9.62 22.39 0.22 -2.22 16 16 N -0.29 -9.12 11.33 -52.43 -0.59 -9.71 16 17 C 0.14 5.12 4.80 45.55 0.22 5.34 16 18 C 0.11 5.23 8.10 83.18 0.67 5.91 16 19 N -0.65 -36.12 3.69 -737.92 -2.72 -38.84 16 20 C -0.29 -18.48 11.09 84.03 0.93 -17.54 16 21 H 0.05 3.56 8.05 -2.91 -0.02 3.54 16 22 C -0.08 -5.22 5.50 84.86 0.47 -4.75 16 23 N -0.97 -66.26 13.70 21.65 0.30 -65.96 16 24 Si 1.11 59.61 25.10 68.60 1.72 61.33 16 25 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 26 H -0.26 -12.12 6.35 99.48 0.63 -11.48 16 27 H -0.29 -15.40 6.66 99.48 0.66 -14.74 16 28 C 0.07 3.30 5.29 83.27 0.44 3.74 16 29 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 1.01 6.54 -2.39 -0.02 0.99 16 32 H 0.11 2.17 5.67 -2.39 -0.01 2.15 16 33 H 0.10 1.68 7.90 -2.39 -0.02 1.67 16 34 H 0.29 0.04 7.01 -2.91 -0.02 0.02 16 35 H 0.17 -0.29 6.71 -2.91 -0.02 -0.31 16 36 H 0.17 -0.64 8.06 -2.91 -0.02 -0.67 16 37 H 0.16 0.01 8.06 -2.91 -0.02 -0.01 16 38 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.11 2.69 7.68 -2.91 -0.02 2.67 16 40 H 0.16 4.80 7.94 -2.39 -0.02 4.78 16 41 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.03 1.64 6.36 -2.39 -0.02 1.62 16 43 H 0.25 16.92 8.73 -92.71 -0.81 16.11 16 44 H 0.06 3.18 5.26 -2.39 -0.01 3.17 16 45 H 0.05 2.39 4.01 -2.39 -0.01 2.38 16 Total: -1.00 -94.94 362.02 4.49 -90.45 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 0.87 Total: 2.40 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 9.06 Total: 24.62 kcal Atomic # 7 Polarization: -145.27 SS G_CDS: -7.11 Total: -152.38 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 59.61 SS G_CDS: 1.72 Total: 61.33 kcal Total: -94.94 4.49 -90.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950582242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.434 kcal (2) G-P(sol) polarization free energy of solvation -94.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds