Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47246 * 2 1 4 4 C 1.34783 * 119.99675 * 98.73927 * 3 2 1 5 5 O 1.21576 * 119.99776 * 186.57968 * 4 3 2 6 6 C 1.47659 * 120.00217 * 6.58541 * 4 3 2 7 7 C 1.40233 * 120.49733 * 150.12101 * 6 4 3 8 8 C 1.38023 * 118.35563 * 179.97438 * 7 6 4 9 9 C 1.39156 * 119.25394 * 359.97438 * 8 7 6 10 10 N 1.39498 * 119.52638 * 179.97438 * 9 8 7 11 11 C 1.37225 * 126.49722 * 185.28111 * 10 9 8 12 12 C 1.34584 * 106.82643 * 180.15311 * 11 10 9 13 13 N 1.34179 * 108.23629 * 359.58618 * 12 11 10 14 14 C 1.30457 * 109.38305 * 0.26539 * 13 12 11 15 15 N 1.32429 * 120.94399 * 0.25628 * 9 8 7 16 16 C 1.31639 * 121.80471 * 359.47679 * 15 9 8 17 17 C 1.46496 * 120.00289 * 278.74249 * 3 2 1 18 18 C 1.53941 * 113.74189 * 222.75879 * 17 3 2 19 19 N 1.47818 * 86.03712 * 222.08119 * 18 17 3 20 20 C 1.36931 * 134.45847 * 204.64840 * 19 18 17 21 21 H 1.07998 * 120.00017 * 179.86184 * 20 19 18 22 22 C 1.38815 * 119.99983 * 359.86146 * 20 19 18 23 23 N 1.31616 * 119.99989 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47376 * 60.00002 * 24 22 20 26 26 H 1.48500 * 109.46913 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47222 * 299.99482 * 24 22 20 28 28 C 1.47582 * 91.04877 * 24.54528 * 19 18 17 29 29 H 1.09002 * 109.47301 * 299.99762 * 1 2 3 30 30 H 1.09003 * 109.47356 * 59.99750 * 1 2 3 31 31 H 1.09004 * 109.47599 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47119 * 239.99715 * 2 1 3 33 33 H 1.09000 * 109.46915 * 120.00006 * 2 1 3 34 34 H 1.07994 * 120.81912 * 359.94929 * 7 6 4 35 35 H 1.07998 * 120.37119 * 179.97438 * 8 7 6 36 36 H 1.08002 * 126.59044 * 0.02562 * 11 10 9 37 37 H 1.07997 * 125.88643 * 179.85080 * 12 11 10 38 38 H 1.07996 * 125.72828 * 180.02562 * 14 13 12 39 39 H 1.07990 * 119.68391 * 180.26387 * 16 15 9 40 40 H 1.09005 * 112.94251 * 354.34349 * 17 3 2 41 41 H 1.09000 * 113.76955 * 336.34171 * 18 17 3 42 42 H 1.09005 * 113.77061 * 107.74429 * 18 17 3 43 43 H 0.97002 * 120.00046 * 179.97438 * 23 22 20 44 44 H 1.08994 * 113.76984 * 221.15106 * 28 19 18 45 45 H 1.08999 * 113.76328 * 89.75439 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4101 1.9574 1.1537 5 8 2.7015 3.1375 1.1755 6 6 2.4857 1.1553 2.3912 7 6 3.4151 1.4756 3.3913 8 6 3.4472 0.6965 4.5302 9 6 2.5635 -0.3719 4.6483 10 7 2.5914 -1.1634 5.7967 11 6 1.8617 -2.3040 6.0198 12 6 2.1909 -2.7428 7.2488 13 7 3.1025 -1.9039 7.7641 14 6 3.3511 -0.9540 6.9051 15 7 1.7003 -0.6515 3.6838 16 6 1.6322 0.0681 2.5836 17 6 2.0807 2.1361 -1.2539 18 6 3.3714 2.9588 -1.4185 19 7 2.4987 4.0330 -1.9376 20 6 2.6876 5.1044 -2.7691 21 1 1.8613 5.7597 -3.0017 22 6 3.9412 5.3482 -3.3131 23 7 4.9484 4.5498 -3.0292 24 14 4.1991 6.8103 -4.4468 25 1 3.8734 8.0636 -3.7202 26 1 5.6160 6.8493 -4.8897 27 1 3.3132 6.6804 -5.6315 28 6 1.3420 3.4857 -1.2024 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0893 2.3109 3.2730 35 1 4.1502 0.9138 5.3207 36 1 1.1570 -2.7606 5.3406 37 1 1.7933 -3.6215 7.7347 38 1 4.0442 -0.1385 7.0497 39 1 0.9121 -0.1881 1.8207 40 1 1.8310 1.5322 -2.1264 41 1 3.8582 3.2058 -0.4751 42 1 4.0594 2.5531 -2.1603 43 1 5.8243 4.7200 -3.4096 44 1 0.4127 3.5000 -1.7718 45 1 1.2315 3.8878 -0.1953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951013359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 180.357387 kcal Electronic energy + Delta-G solvation = -29189.067654 eV Core-core repulsion = 25212.268944 eV Total energy + Delta-G solvation = -3976.798710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.73441 -41.15082 -39.58382 -36.98585 -36.05306 -34.41188 -33.08259 -32.17677 -30.62519 -30.47977 -29.69953 -27.42168 -25.24352 -24.73774 -24.54313 -23.39679 -23.25848 -21.64359 -21.30065 -20.45671 -19.25407 -19.00639 -17.23594 -17.12980 -16.64235 -16.18981 -16.07642 -15.45241 -15.31762 -14.70855 -14.68614 -14.51687 -14.26339 -14.03548 -13.96324 -13.69698 -13.67623 -13.31921 -12.99578 -12.59192 -12.49959 -12.40631 -11.77109 -11.57802 -11.36580 -11.33396 -10.97076 -10.85112 -10.67925 -10.54438 -10.37509 -10.30193 -10.15332 -9.99429 -9.52426 -9.47268 -9.14895 -8.82969 -8.66630 -8.25447 -6.79831 -5.72917 -3.03689 0.01915 0.69274 1.71456 2.01864 2.71610 2.81628 3.00594 3.41669 3.43379 3.45919 3.47031 3.76208 4.08142 4.23798 4.28664 4.37145 4.49584 4.52190 4.69221 4.79818 4.94395 5.04291 5.05642 5.17042 5.19151 5.26144 5.41587 5.46902 5.50335 5.59498 5.60473 5.64712 5.78049 5.80032 5.89855 6.02303 6.28187 6.29577 6.50443 6.56325 6.69258 6.88675 7.23797 7.27963 7.49812 7.56799 7.57814 7.62247 8.01047 8.32582 9.08342 9.74573 10.64631 11.44466 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002340 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.296775 B =11961.897881 C =12746.315675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.071 3.929 3 N -0.592 5.592 4 C 0.554 3.446 5 O -0.499 6.499 6 C -0.183 4.183 7 C 0.008 3.992 8 C -0.185 4.185 9 C 0.355 3.645 10 N -0.411 5.411 11 C -0.024 4.024 12 C -0.032 4.032 13 N -0.478 5.478 14 C 0.195 3.805 15 N -0.500 5.500 16 C 0.132 3.868 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.603 5.603 20 C -0.217 4.217 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.213 0.787 39 H 0.201 0.799 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.253 0.747 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -16.294 15.104 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.053 4.053 3 N -0.325 5.325 4 C 0.340 3.660 5 O -0.374 6.374 6 C -0.189 4.189 7 C -0.019 4.019 8 C -0.207 4.207 9 C 0.127 3.873 10 N -0.093 5.093 11 C -0.153 4.153 12 C -0.176 4.176 13 N -0.195 5.195 14 C -0.087 4.087 15 N -0.212 5.212 16 C -0.025 4.025 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.329 5.329 20 C -0.345 4.345 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.194 0.806 38 H 0.229 0.771 39 H 0.217 0.783 40 H 0.125 0.875 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.727 -16.205 15.711 23.552 hybrid contribution 0.340 1.499 -1.446 2.110 sum -6.387 -14.706 14.266 21.461 Atomic orbital electron populations 1.22330 0.95566 1.02672 1.03438 1.22359 0.94655 0.83947 1.04314 1.48033 1.63284 1.13333 1.07875 1.17845 0.78615 0.87002 0.82515 1.90909 1.47267 1.14607 1.84607 1.21258 1.00610 0.99126 0.97925 1.21638 0.94415 0.96357 0.89470 1.21524 1.01645 0.96591 1.00920 1.18382 0.92780 0.89666 0.86507 1.43136 1.33227 1.20428 1.12547 1.22979 1.01936 0.90017 1.00387 1.22423 0.99829 1.01821 0.93536 1.70345 1.15905 1.04099 1.29163 1.25411 0.99359 1.01727 0.82179 1.67117 1.21301 1.31290 1.01516 1.24175 0.96996 0.88654 0.92703 1.24175 1.02373 0.91418 0.83358 1.22699 0.91353 0.85193 0.97669 1.45662 1.05817 1.30416 1.51037 1.18940 0.95095 1.02260 1.18230 0.90316 1.24780 0.95544 0.99275 1.00949 1.69811 1.00651 1.38725 1.47650 0.86192 0.76860 0.82215 0.80450 1.21216 1.21592 1.21114 1.22947 0.92002 0.90318 0.96239 0.92013 0.90796 0.90988 0.89795 0.88865 0.82306 0.83284 0.79971 0.80627 0.77064 0.78280 0.87536 0.93119 0.91359 0.93676 0.94471 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.15 37.16 0.34 -1.10 16 2 C 0.07 0.68 5.58 -4.05 -0.02 0.65 16 3 N -0.59 -8.51 2.74 -169.09 -0.46 -8.97 16 4 C 0.55 8.69 6.88 -12.41 -0.09 8.61 16 5 O -0.50 -10.13 12.50 5.30 0.07 -10.06 16 6 C -0.18 -2.21 5.60 -104.81 -0.59 -2.80 16 7 C 0.01 0.08 9.72 -38.91 -0.38 -0.30 16 8 C -0.18 -1.61 9.48 -39.32 -0.37 -1.99 16 9 C 0.35 3.57 7.49 -154.50 -1.16 2.41 16 10 N -0.41 -3.97 2.98 -63.81 -0.19 -4.16 16 11 C -0.02 -0.22 11.16 -16.43 -0.18 -0.40 16 12 C -0.03 -0.29 11.85 -17.82 -0.21 -0.50 16 13 N -0.48 -5.14 11.24 -14.46 -0.16 -5.30 16 14 C 0.19 1.74 11.89 -89.53 -1.06 0.67 16 15 N -0.50 -5.26 9.87 -12.03 -0.12 -5.38 16 16 C 0.13 1.35 8.67 -17.15 -0.15 1.20 16 17 C 0.09 1.64 4.58 -70.15 -0.32 1.31 16 18 C 0.16 3.78 6.79 -2.84 -0.02 3.76 16 19 N -0.60 -15.94 3.70 -177.88 -0.66 -16.60 16 20 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -27.78 11.39 55.49 0.63 -27.15 16 24 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.11 2.38 8.27 -2.97 -0.02 2.35 16 29 H 0.06 0.50 7.09 -51.93 -0.37 0.13 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.09 0.80 4.00 -52.02 -0.21 0.59 16 34 H 0.16 1.64 7.98 -52.49 -0.42 1.22 16 35 H 0.15 0.83 6.75 -52.49 -0.35 0.47 16 36 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.21 1.09 7.05 -52.49 -0.37 0.72 16 39 H 0.20 1.69 2.62 -52.49 -0.14 1.55 16 40 H 0.11 1.77 8.07 -51.93 -0.42 1.35 16 41 H 0.05 1.33 5.76 -51.93 -0.30 1.03 16 42 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 1.15 6.26 -51.93 -0.32 0.82 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -36.46 366.15 -10.25 -46.70 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.35 Total: 0.82 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -4.49 Total: 7.12 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.96 Total: -67.57 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.46 -10.25 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951013359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.061 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds