Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47246 * 2 1 4 4 C 1.34783 * 119.99675 * 98.73927 * 3 2 1 5 5 O 1.21576 * 119.99776 * 186.57968 * 4 3 2 6 6 C 1.47659 * 120.00217 * 6.58541 * 4 3 2 7 7 C 1.40233 * 120.49733 * 150.12101 * 6 4 3 8 8 C 1.38023 * 118.35563 * 179.97438 * 7 6 4 9 9 C 1.39156 * 119.25394 * 359.97438 * 8 7 6 10 10 N 1.39498 * 119.52638 * 179.97438 * 9 8 7 11 11 C 1.37225 * 126.49722 * 185.28111 * 10 9 8 12 12 C 1.34584 * 106.82643 * 180.15311 * 11 10 9 13 13 N 1.34179 * 108.23629 * 359.58618 * 12 11 10 14 14 C 1.30457 * 109.38305 * 0.26539 * 13 12 11 15 15 N 1.32429 * 120.94399 * 0.25628 * 9 8 7 16 16 C 1.31639 * 121.80471 * 359.47679 * 15 9 8 17 17 C 1.46496 * 120.00289 * 278.74249 * 3 2 1 18 18 C 1.53941 * 113.74189 * 222.75879 * 17 3 2 19 19 N 1.47818 * 86.03712 * 222.08119 * 18 17 3 20 20 C 1.36931 * 134.45847 * 204.64840 * 19 18 17 21 21 H 1.07998 * 120.00017 * 179.86184 * 20 19 18 22 22 C 1.38815 * 119.99983 * 359.86146 * 20 19 18 23 23 N 1.31616 * 119.99989 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47376 * 60.00002 * 24 22 20 26 26 H 1.48500 * 109.46913 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47222 * 299.99482 * 24 22 20 28 28 C 1.47582 * 91.04877 * 24.54528 * 19 18 17 29 29 H 1.09002 * 109.47301 * 299.99762 * 1 2 3 30 30 H 1.09003 * 109.47356 * 59.99750 * 1 2 3 31 31 H 1.09004 * 109.47599 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47119 * 239.99715 * 2 1 3 33 33 H 1.09000 * 109.46915 * 120.00006 * 2 1 3 34 34 H 1.07994 * 120.81912 * 359.94929 * 7 6 4 35 35 H 1.07998 * 120.37119 * 179.97438 * 8 7 6 36 36 H 1.08002 * 126.59044 * 0.02562 * 11 10 9 37 37 H 1.07997 * 125.88643 * 179.85080 * 12 11 10 38 38 H 1.07996 * 125.72828 * 180.02562 * 14 13 12 39 39 H 1.07990 * 119.68391 * 180.26387 * 16 15 9 40 40 H 1.09005 * 112.94251 * 354.34349 * 17 3 2 41 41 H 1.09000 * 113.76955 * 336.34171 * 18 17 3 42 42 H 1.09005 * 113.77061 * 107.74429 * 18 17 3 43 43 H 0.97002 * 120.00046 * 179.97438 * 23 22 20 44 44 H 1.08994 * 113.76984 * 221.15106 * 28 19 18 45 45 H 1.08999 * 113.76328 * 89.75439 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4101 1.9574 1.1537 5 8 2.7015 3.1375 1.1755 6 6 2.4857 1.1553 2.3912 7 6 3.4151 1.4756 3.3913 8 6 3.4472 0.6965 4.5302 9 6 2.5635 -0.3719 4.6483 10 7 2.5914 -1.1634 5.7967 11 6 1.8617 -2.3040 6.0198 12 6 2.1909 -2.7428 7.2488 13 7 3.1025 -1.9039 7.7641 14 6 3.3511 -0.9540 6.9051 15 7 1.7003 -0.6515 3.6838 16 6 1.6322 0.0681 2.5836 17 6 2.0807 2.1361 -1.2539 18 6 3.3714 2.9588 -1.4185 19 7 2.4987 4.0330 -1.9376 20 6 2.6876 5.1044 -2.7691 21 1 1.8613 5.7597 -3.0017 22 6 3.9412 5.3482 -3.3131 23 7 4.9484 4.5498 -3.0292 24 14 4.1991 6.8103 -4.4468 25 1 3.8734 8.0636 -3.7202 26 1 5.6160 6.8493 -4.8897 27 1 3.3132 6.6804 -5.6315 28 6 1.3420 3.4857 -1.2024 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0893 2.3109 3.2730 35 1 4.1502 0.9138 5.3207 36 1 1.1570 -2.7606 5.3406 37 1 1.7933 -3.6215 7.7347 38 1 4.0442 -0.1385 7.0497 39 1 0.9121 -0.1881 1.8207 40 1 1.8310 1.5322 -2.1264 41 1 3.8582 3.2058 -0.4751 42 1 4.0594 2.5531 -2.1603 43 1 5.8243 4.7200 -3.4096 44 1 0.4127 3.5000 -1.7718 45 1 1.2315 3.8878 -0.1953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951013359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 158.173042 kcal Electronic energy + Delta-G solvation = -29190.029639 eV Core-core repulsion = 25212.268944 eV Total energy + Delta-G solvation = -3977.760696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.43435 -42.17646 -40.72410 -38.58141 -37.16409 -35.28262 -34.16223 -33.89887 -31.68727 -31.37662 -30.41229 -29.25400 -26.57672 -26.33151 -25.39683 -24.74544 -24.23675 -22.46299 -22.11097 -21.81307 -20.36376 -19.91109 -18.78429 -18.24176 -18.02404 -17.09543 -16.87326 -16.80153 -16.60494 -16.37542 -15.91895 -15.48092 -15.29687 -14.94072 -14.87058 -14.74505 -14.48818 -14.33908 -14.15760 -13.98429 -13.74937 -13.45703 -13.28539 -13.00418 -12.84583 -12.68551 -12.51989 -12.23353 -12.03236 -11.89364 -11.72620 -11.48145 -11.26525 -11.22802 -11.10253 -10.92762 -10.55295 -9.91639 -9.61487 -9.51468 -8.88845 -7.90920 -5.23974 -0.80801 -0.08502 0.96857 1.30473 1.43110 1.47811 1.53664 1.70265 1.87638 2.06112 2.48577 2.55670 3.02173 3.25288 3.31531 3.41424 3.50003 3.57040 3.65003 3.78432 3.84193 3.94961 4.05538 4.25706 4.30276 4.34663 4.41367 4.52288 4.53706 4.57381 4.72191 4.77434 4.82289 4.92231 4.94655 5.03540 5.06803 5.11628 5.23765 5.24474 5.40218 5.49131 5.64089 5.83609 5.91812 6.00341 6.38756 6.46874 6.90213 6.90827 7.11762 7.59624 8.56671 9.26216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002340 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.296775 B =11961.897881 C =12746.315675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 N -0.590 5.590 4 C 0.552 3.448 5 O -0.556 6.556 6 C -0.200 4.200 7 C 0.002 3.998 8 C -0.172 4.172 9 C 0.353 3.647 10 N -0.418 5.418 11 C -0.034 4.034 12 C -0.040 4.040 13 N -0.511 5.511 14 C 0.196 3.804 15 N -0.506 5.506 16 C 0.145 3.855 17 C 0.128 3.872 18 C 0.154 3.846 19 N -0.634 5.634 20 C -0.234 4.234 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.982 3.018 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.270 1.270 28 C 0.113 3.887 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.155 0.845 35 H 0.183 0.817 36 H 0.196 0.804 37 H 0.196 0.804 38 H 0.245 0.755 39 H 0.218 0.782 40 H 0.132 0.868 41 H 0.024 0.976 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.058 0.942 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -18.008 15.775 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.056 4.056 3 N -0.321 5.321 4 C 0.341 3.659 5 O -0.435 6.435 6 C -0.206 4.206 7 C -0.025 4.025 8 C -0.194 4.194 9 C 0.125 3.875 10 N -0.100 5.100 11 C -0.162 4.162 12 C -0.183 4.183 13 N -0.228 5.228 14 C -0.085 4.085 15 N -0.218 5.218 16 C -0.013 4.013 17 C 0.024 3.976 18 C 0.028 3.972 19 N -0.360 5.360 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.810 3.190 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.196 1.196 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.172 0.828 35 H 0.201 0.799 36 H 0.213 0.787 37 H 0.213 0.787 38 H 0.260 0.740 39 H 0.234 0.766 40 H 0.150 0.850 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.121 -17.995 16.415 25.676 hybrid contribution 0.737 1.955 -1.494 2.568 sum -7.384 -16.041 14.921 23.119 Atomic orbital electron populations 1.22322 0.93724 1.04636 1.02980 1.22711 0.96054 0.80925 1.05889 1.47988 1.63008 1.14970 1.06147 1.18394 0.77219 0.86590 0.83718 1.90879 1.49742 1.17218 1.85683 1.20985 1.02673 1.00086 0.96860 1.21712 0.94237 0.96625 0.89915 1.21762 1.01545 0.95306 1.00786 1.18612 0.92594 0.89788 0.86482 1.43250 1.33618 1.20622 1.12548 1.23280 1.02240 0.90015 1.00708 1.22831 0.99479 1.02264 0.93730 1.70360 1.17005 1.05186 1.30218 1.26109 0.99030 1.01896 0.81450 1.67173 1.21641 1.31357 1.01639 1.24319 0.96430 0.87568 0.92949 1.23450 0.97206 0.91028 0.85912 1.22518 0.93063 0.86345 0.95282 1.46091 1.08161 1.30473 1.51308 1.19374 0.95440 1.03088 1.18377 0.89941 1.25682 0.95330 1.02250 1.02964 1.70023 1.00757 1.40467 1.49019 0.85101 0.76553 0.78665 0.78698 1.20786 1.21896 1.19577 1.23006 0.91698 0.91509 0.95061 0.92195 0.91580 0.87782 0.88238 0.87362 0.82754 0.79939 0.78687 0.78731 0.73958 0.76605 0.85002 0.95813 0.94359 0.94299 0.92415 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.15 71.98 0.66 -1.58 16 2 C 0.07 1.08 5.58 86.38 0.48 1.57 16 3 N -0.59 -16.54 2.74 -807.13 -2.21 -18.75 16 4 C 0.55 17.57 6.88 86.73 0.60 18.17 16 5 O -0.56 -23.76 12.50 -3.96 -0.05 -23.81 16 6 C -0.20 -4.69 5.60 -19.99 -0.11 -4.80 16 7 C 0.00 0.03 9.72 22.70 0.22 0.25 16 8 C -0.17 -2.63 9.48 22.44 0.21 -2.41 16 9 C 0.35 6.25 7.49 132.89 1.00 7.25 16 10 N -0.42 -7.04 2.98 -355.79 -1.06 -8.10 16 11 C -0.03 -0.54 11.16 83.01 0.93 0.38 16 12 C -0.04 -0.66 11.85 83.50 0.99 0.33 16 13 N -0.51 -10.04 11.24 -199.65 -2.24 -12.28 16 14 C 0.20 3.01 11.89 179.97 2.14 5.15 16 15 N -0.51 -9.40 9.87 -191.98 -1.89 -11.30 16 16 C 0.14 2.65 8.67 85.04 0.74 3.39 16 17 C 0.13 4.67 4.58 46.75 0.21 4.88 16 18 C 0.15 7.76 6.79 86.44 0.59 8.34 16 19 N -0.63 -34.49 3.70 -716.68 -2.65 -37.15 16 20 C -0.23 -13.79 10.70 84.04 0.90 -12.89 16 21 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 23 N -0.95 -59.68 11.39 21.65 0.25 -59.43 16 24 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 C 0.11 4.86 8.27 86.48 0.72 5.58 16 29 H 0.06 0.80 7.09 -2.39 -0.02 0.78 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.41 8.13 -2.39 -0.02 1.39 16 33 H 0.11 1.54 4.00 -2.48 -0.01 1.53 16 34 H 0.15 3.28 7.98 -2.91 -0.02 3.25 16 35 H 0.18 1.42 6.75 -2.91 -0.02 1.40 16 36 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.24 1.70 7.05 -2.91 -0.02 1.68 16 39 H 0.22 3.05 2.62 -2.92 -0.01 3.04 16 40 H 0.13 4.17 8.07 -2.38 -0.02 4.15 16 41 H 0.02 1.34 5.76 -2.39 -0.01 1.32 16 42 H 0.04 2.12 7.17 -2.38 -0.02 2.10 16 43 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.72 6.26 -2.39 -0.01 1.70 16 Total: -1.00 -83.38 366.15 3.93 -79.45 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.04 Total: 12.28 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 10.73 Total: 29.96 kcal Atomic # 7 Polarization: -137.19 SS G_CDS: -9.82 Total: -147.00 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -83.38 3.93 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951013359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.618 kcal (2) G-P(sol) polarization free energy of solvation -83.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds