Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47486 * 2 1 4 4 C 1.34775 * 120.00109 * 98.73614 * 3 2 1 5 5 O 1.21568 * 120.00478 * 186.57929 * 4 3 2 6 6 C 1.47675 * 119.99587 * 6.58738 * 4 3 2 7 7 C 1.40233 * 120.49345 * 150.12295 * 6 4 3 8 8 C 1.38026 * 118.35097 * 179.97438 * 7 6 4 9 9 C 1.39160 * 119.25884 * 359.97438 * 8 7 6 10 10 N 1.39495 * 119.52840 * 179.97438 * 9 8 7 11 11 C 1.35909 * 126.10567 * 180.02562 * 10 9 8 12 12 C 1.35247 * 107.60862 * 179.72440 * 11 10 9 13 13 C 1.40004 * 107.96773 * 0.37205 * 12 11 10 14 14 N 1.30797 * 108.37664 * 359.62149 * 13 12 11 15 15 N 1.32434 * 120.93897 * 0.25658 * 9 8 7 16 16 C 1.31632 * 121.80326 * 359.47650 * 15 9 8 17 17 C 1.46503 * 119.99916 * 278.74353 * 3 2 1 18 18 C 1.53947 * 113.73720 * 222.75344 * 17 3 2 19 19 N 1.47820 * 86.03202 * 222.08292 * 18 17 3 20 20 C 1.36937 * 134.45232 * 204.64027 * 19 18 17 21 21 H 1.08003 * 119.99710 * 179.86759 * 20 19 18 22 22 C 1.38809 * 120.00236 * 359.87609 * 20 19 18 23 23 N 1.31617 * 120.00079 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00027 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47177 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47163 * 119.99707 * 24 22 20 27 27 H 1.48498 * 109.47404 * 239.99984 * 24 22 20 28 28 C 1.47586 * 91.05120 * 24.55247 * 19 18 17 29 29 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46759 * 299.99968 * 1 2 3 31 31 H 1.08997 * 109.46868 * 59.99625 * 1 2 3 32 32 H 1.08998 * 109.46759 * 240.00032 * 2 1 3 33 33 H 1.08997 * 109.46868 * 120.00375 * 2 1 3 34 34 H 1.07992 * 120.82258 * 359.95101 * 7 6 4 35 35 H 1.08003 * 120.36935 * 179.97438 * 8 7 6 36 36 H 1.08004 * 126.19594 * 359.96336 * 11 10 9 37 37 H 1.07993 * 126.01452 * 180.24072 * 12 11 10 38 38 H 1.07994 * 125.81194 * 179.88330 * 13 12 11 39 39 H 1.08000 * 119.67854 * 180.26300 * 16 15 9 40 40 H 1.08995 * 112.94576 * 354.34808 * 17 3 2 41 41 H 1.08990 * 113.77102 * 336.34910 * 18 17 3 42 42 H 1.09000 * 113.76837 * 107.75147 * 18 17 3 43 43 H 0.96998 * 120.00150 * 179.97438 * 23 22 20 44 44 H 1.08998 * 113.76133 * 221.14802 * 28 19 18 45 45 H 1.09002 * 113.76713 * 89.75264 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.4103 1.9574 1.1536 5 8 2.7017 3.1374 1.1755 6 6 2.4858 1.1552 2.3912 7 6 3.4151 1.4756 3.3913 8 6 3.4472 0.6965 4.5302 9 6 2.5635 -0.3721 4.6483 10 7 2.5913 -1.1635 5.7967 11 6 1.7939 -2.2343 6.0509 12 6 2.1415 -2.7248 7.2624 13 6 3.1752 -1.9288 7.7703 14 7 3.4470 -0.9970 6.8935 15 7 1.7003 -0.6516 3.6837 16 6 1.6323 0.0680 2.5836 17 6 2.0809 2.1361 -1.2540 18 6 3.3716 2.9588 -1.4185 19 7 2.4988 4.0329 -1.9377 20 6 2.6878 5.1044 -2.7691 21 1 1.8615 5.7598 -3.0017 22 6 3.9414 5.3482 -3.3131 23 7 4.9485 4.5497 -3.0294 24 14 4.1990 6.8095 -4.4478 25 1 2.9190 7.5455 -4.6055 26 1 5.2214 7.7150 -3.8645 27 1 4.6617 6.3302 -5.7750 28 6 1.3421 3.4857 -1.2023 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.0893 2.3109 3.2731 35 1 4.1502 0.9137 5.3208 36 1 1.0248 -2.6253 5.4013 37 1 1.6982 -3.5788 7.7527 38 1 3.6675 -2.0638 8.7220 39 1 0.9122 -0.1882 1.8206 40 1 1.8311 1.5322 -2.1264 41 1 3.8584 3.2057 -0.4752 42 1 4.0596 2.5532 -2.1603 43 1 5.8244 4.7199 -3.4098 44 1 0.4128 3.5000 -1.7719 45 1 1.2316 3.8878 -0.1952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951084000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = 196.359574 kcal Electronic energy + Delta-G solvation = -29148.536006 eV Core-core repulsion = 25172.431203 eV Total energy + Delta-G solvation = -3976.104803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93531 -40.95568 -39.45447 -36.91219 -35.94610 -33.81989 -32.85896 -32.09904 -30.73694 -30.40946 -29.88740 -27.36246 -25.11790 -24.69299 -24.37630 -23.30737 -23.22062 -21.50703 -21.18897 -20.38424 -19.00092 -18.72563 -17.21409 -17.05875 -16.59026 -15.94005 -15.79914 -15.42729 -15.26456 -14.82817 -14.67209 -14.44949 -14.04793 -13.84839 -13.64744 -13.57494 -13.32768 -13.11582 -12.92476 -12.51651 -12.43239 -12.35546 -11.71898 -11.51314 -11.30351 -11.26037 -11.23911 -10.84952 -10.70662 -10.60972 -10.24308 -10.17128 -10.07597 -9.91646 -9.54550 -9.46735 -9.38606 -8.66372 -8.56255 -8.18939 -6.75992 -5.69913 -3.00558 0.12247 0.84315 1.61825 1.75919 2.39164 2.89285 3.08628 3.43048 3.48261 3.50754 3.55676 3.87024 4.12149 4.36578 4.46724 4.53690 4.57208 4.72971 4.78081 4.82756 4.99993 5.07663 5.22914 5.27023 5.30543 5.31389 5.51240 5.54347 5.54939 5.62016 5.64759 5.68588 5.76918 5.86982 6.00636 6.07877 6.15891 6.34198 6.56678 6.60664 6.69393 6.93844 6.97683 7.32260 7.48770 7.55761 7.61198 7.68516 8.04278 8.40899 9.11557 9.77681 10.68124 11.47611 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.002339 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.312474 B =11967.030914 C =12757.724227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.071 3.929 3 N -0.593 5.593 4 C 0.555 3.445 5 O -0.500 6.500 6 C -0.187 4.187 7 C 0.003 3.997 8 C -0.169 4.169 9 C 0.379 3.621 10 N -0.326 5.326 11 C 0.080 3.920 12 C -0.266 4.266 13 C 0.064 3.936 14 N -0.283 5.283 15 N -0.510 5.510 16 C 0.132 3.868 17 C 0.090 3.910 18 C 0.156 3.844 19 N -0.604 5.604 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.112 3.888 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.157 0.843 38 H 0.194 0.806 39 H 0.201 0.799 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 -18.907 17.674 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.053 4.053 3 N -0.326 5.326 4 C 0.342 3.658 5 O -0.375 6.375 6 C -0.194 4.194 7 C -0.023 4.023 8 C -0.192 4.192 9 C 0.152 3.848 10 N -0.104 5.104 11 C -0.061 4.061 12 C -0.295 4.295 13 C -0.125 4.125 14 N -0.102 5.102 15 N -0.223 5.223 16 C -0.026 4.026 17 C -0.013 4.013 18 C 0.030 3.970 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.098 0.902 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.015 4.015 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.201 0.799 37 H 0.174 0.826 38 H 0.210 0.790 39 H 0.217 0.783 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.322 -17.695 17.207 25.745 hybrid contribution 0.220 0.639 -0.385 0.778 sum -7.102 -17.056 16.823 24.987 Atomic orbital electron populations 1.22329 0.95631 1.02607 1.03412 1.22357 0.94608 0.83992 1.04325 1.48020 1.63423 1.13326 1.07856 1.17857 0.78476 0.86986 0.82511 1.90898 1.47285 1.14673 1.84648 1.21205 1.00890 0.99340 0.97920 1.21668 0.94548 0.96525 0.89603 1.21567 1.01412 0.95772 1.00416 1.17894 0.92796 0.89205 0.84915 1.45769 1.28207 1.23093 1.13321 1.22977 0.96436 0.88771 0.97892 1.21695 1.04223 1.06219 0.97333 1.24203 0.96670 0.92530 0.99053 1.77493 1.14073 1.23905 0.94711 1.66972 1.22017 1.31740 1.01587 1.24076 0.97135 0.88809 0.92534 1.24149 1.02321 0.91407 0.83406 1.22702 0.91375 0.85197 0.97680 1.45689 1.05856 1.30419 1.51025 1.19037 0.95101 1.02168 1.18007 0.90222 1.24782 0.95564 0.99302 1.01007 1.69834 1.00608 1.38664 1.47690 0.86044 0.77667 0.81948 0.80105 1.20489 1.21799 1.21784 1.22953 0.91963 0.90370 0.96233 0.91037 0.91993 0.90862 0.89879 0.88770 0.82530 0.82869 0.79897 0.82558 0.78962 0.78312 0.87579 0.93078 0.91383 0.93801 0.94497 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.15 37.16 0.34 -1.17 16 2 C 0.07 0.72 5.58 -4.04 -0.02 0.69 16 3 N -0.59 -8.93 2.74 -169.08 -0.46 -9.39 16 4 C 0.56 9.23 6.88 -12.41 -0.09 9.14 16 5 O -0.50 -10.62 12.50 5.31 0.07 -10.56 16 6 C -0.19 -2.50 5.60 -104.81 -0.59 -3.08 16 7 C 0.00 0.04 9.72 -38.91 -0.38 -0.34 16 8 C -0.17 -1.99 9.68 -39.32 -0.38 -2.37 16 9 C 0.38 4.58 7.55 -154.50 -1.17 3.42 16 10 N -0.33 -3.70 3.80 -12.10 -0.05 -3.75 16 11 C 0.08 0.72 11.09 -16.81 -0.19 0.53 16 12 C -0.27 -1.92 10.80 -39.99 -0.43 -2.35 16 13 C 0.06 0.51 12.02 -17.33 -0.21 0.30 16 14 N -0.28 -3.13 11.81 30.64 0.36 -2.77 16 15 N -0.51 -5.85 9.83 -12.03 -0.12 -5.97 16 16 C 0.13 1.47 8.67 -17.15 -0.15 1.32 16 17 C 0.09 1.69 4.58 -70.15 -0.32 1.37 16 18 C 0.16 3.86 6.79 -2.83 -0.02 3.84 16 19 N -0.60 -16.24 3.70 -177.88 -0.66 -16.90 16 20 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 21 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -28.18 11.39 55.49 0.63 -27.55 16 24 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.11 2.43 8.27 -2.96 -0.02 2.41 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 7.09 -51.93 -0.37 0.16 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.09 0.87 4.00 -52.02 -0.21 0.66 16 34 H 0.16 1.93 7.98 -52.49 -0.42 1.51 16 35 H 0.15 1.65 7.67 -52.48 -0.40 1.24 16 36 H 0.18 1.26 8.05 -52.48 -0.42 0.83 16 37 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.20 1.81 2.62 -52.49 -0.14 1.67 16 40 H 0.11 1.81 8.07 -51.93 -0.42 1.39 16 41 H 0.05 1.37 5.76 -51.93 -0.30 1.07 16 42 H 0.07 1.83 7.17 -51.93 -0.37 1.45 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 1.18 6.26 -51.93 -0.32 0.86 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -36.47 368.68 -9.03 -45.49 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.45 Total: 1.21 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -3.88 Total: 6.87 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.29 Total: -66.34 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.47 -9.03 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951084000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.850 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds