Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46851 * 2 1 4 4 C 1.34779 * 119.99556 * 98.30302 * 3 2 1 5 5 O 1.21511 * 119.99251 * 186.34479 * 4 3 2 6 6 C 1.48154 * 120.00113 * 6.34936 * 4 3 2 7 7 C 1.39942 * 120.89390 * 331.12128 * 6 4 3 8 8 C 1.38053 * 119.13834 * 180.02562 * 7 6 4 9 9 N 1.31848 * 120.98280 * 359.72833 * 8 7 6 10 10 C 1.32231 * 121.96816 * 0.56964 * 9 8 7 11 11 N 1.39840 * 119.62482 * 179.70611 * 10 9 8 12 12 C 1.35834 * 126.09827 * 359.72742 * 11 10 9 13 13 C 1.35286 * 107.61267 * 180.02562 * 12 11 10 14 14 C 1.39958 * 107.96754 * 359.97438 * 13 12 11 15 15 N 1.30823 * 108.36814 * 0.26881 * 14 13 12 16 16 C 1.38917 * 120.75187 * 359.43029 * 10 9 8 17 17 C 1.46495 * 119.99962 * 278.29871 * 3 2 1 18 18 C 1.53943 * 113.74213 * 222.90503 * 17 3 2 19 19 N 1.47813 * 86.03619 * 222.08807 * 18 17 3 20 20 C 1.36942 * 134.45528 * 204.64535 * 19 18 17 21 21 H 1.07993 * 120.00067 * 179.86552 * 20 19 18 22 22 C 1.38814 * 119.99778 * 359.86421 * 20 19 18 23 23 N 1.31613 * 120.00342 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99780 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47324 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47263 * 120.00113 * 24 22 20 27 27 H 1.48503 * 109.47227 * 240.00090 * 24 22 20 28 28 C 1.47572 * 91.05235 * 24.54779 * 19 18 17 29 29 H 1.08997 * 109.47322 * 59.99537 * 1 2 3 30 30 H 1.09003 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47007 * 299.99941 * 1 2 3 32 32 H 1.08996 * 109.46611 * 239.99776 * 2 1 3 33 33 H 1.09001 * 109.46647 * 120.00233 * 2 1 3 34 34 H 1.07997 * 120.42921 * 0.02562 * 7 6 4 35 35 H 1.08004 * 119.50854 * 179.97438 * 8 7 6 36 36 H 1.08001 * 126.19727 * 0.02562 * 12 11 10 37 37 H 1.07995 * 126.01595 * 179.97438 * 13 12 11 38 38 H 1.07999 * 125.81725 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.52722 * 180.25356 * 16 10 9 40 40 H 1.08999 * 112.94750 * 354.49722 * 17 3 2 41 41 H 1.09000 * 113.77110 * 336.35069 * 18 17 3 42 42 H 1.08999 * 113.77336 * 107.74739 * 18 17 3 43 43 H 0.97001 * 120.00757 * 179.97438 * 23 22 20 44 44 H 1.08995 * 113.77473 * 221.15001 * 28 19 18 45 45 H 1.09006 * 113.76775 * 89.75616 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4018 1.9604 1.1550 5 8 2.6969 3.1389 1.1750 6 6 2.4637 1.1599 2.4002 7 6 1.6217 0.0582 2.5888 8 6 1.7096 -0.6618 3.7634 9 7 2.5754 -0.3289 4.7004 10 6 3.3864 0.7072 4.5680 11 7 4.2817 1.0199 5.5957 12 6 4.4157 0.3524 6.7711 13 6 5.3846 0.9705 7.4848 14 6 5.8591 2.0470 6.7266 15 7 5.1966 2.0808 5.5990 16 6 3.3631 1.4850 3.4173 17 6 2.0898 2.1329 -1.2554 18 6 3.3832 2.9525 -1.4143 19 7 2.5158 4.0272 -1.9412 20 6 2.7120 5.0963 -2.7742 21 1 1.8886 5.7528 -3.0132 22 6 3.9694 5.3360 -3.3112 23 7 4.9729 4.5356 -3.0203 24 14 4.2369 6.7939 -4.4480 25 1 2.9590 7.5315 -4.6162 26 1 5.2577 7.6987 -3.8610 27 1 4.7064 6.3103 -5.7713 28 6 1.3537 3.4842 -1.2115 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.9123 -0.2250 1.8253 35 1 1.0624 -1.5130 3.9153 36 1 3.8510 -0.5149 7.0801 37 1 5.7309 0.6838 8.4667 38 1 6.6367 2.7351 7.0236 39 1 4.0299 2.3279 3.3113 40 1 1.8440 1.5274 -2.1278 41 1 3.8650 3.2007 -0.4687 42 1 4.0747 2.5436 -2.1510 43 1 5.8514 4.7029 -3.3959 44 1 0.4278 3.4991 -1.7864 45 1 1.2380 3.8891 -0.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951722837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = 198.333600 kcal Electronic energy + Delta-G solvation = -29363.301063 eV Core-core repulsion = 25387.281860 eV Total energy + Delta-G solvation = -3976.019203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82420 -40.89823 -39.50233 -36.94126 -36.02194 -33.75675 -32.80148 -31.98405 -30.66387 -30.46714 -29.50304 -27.51032 -25.24516 -24.69719 -24.42276 -23.34751 -23.11683 -21.63260 -21.08364 -20.30118 -19.20125 -17.96568 -17.03953 -16.87786 -16.68298 -16.26253 -15.82295 -15.37332 -15.20493 -14.79781 -14.65758 -14.46180 -14.11847 -13.85500 -13.77129 -13.65197 -13.41873 -13.02507 -12.97111 -12.47754 -12.37727 -11.98916 -11.71883 -11.51860 -11.30160 -11.27974 -11.03087 -10.83798 -10.67920 -10.55042 -10.25304 -10.21076 -9.99725 -9.93246 -9.47173 -9.43600 -9.35269 -8.64095 -8.51948 -8.20689 -6.75549 -5.68831 -2.99778 0.29158 0.63456 1.76726 1.86033 2.53611 2.89498 3.03398 3.43973 3.49034 3.51717 3.56423 3.95739 4.16084 4.32493 4.53651 4.56638 4.63470 4.75688 4.78803 4.91254 5.01453 5.15955 5.22654 5.29248 5.34436 5.43114 5.47134 5.54364 5.58256 5.64653 5.66681 5.67890 5.77723 5.82518 6.06265 6.08307 6.27758 6.33210 6.55631 6.59752 6.80651 6.93119 7.10505 7.32524 7.53763 7.58489 7.61527 7.66804 8.04895 8.36201 9.12234 9.78520 10.68619 11.48586 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.002954 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.463215 B = 9475.029683 C =11326.767923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 N -0.590 5.590 4 C 0.548 3.452 5 O -0.492 6.492 6 C -0.050 4.050 7 C -0.190 4.190 8 C 0.127 3.873 9 N -0.499 5.499 10 C 0.366 3.634 11 N -0.326 5.326 12 C 0.077 3.923 13 C -0.266 4.266 14 C 0.063 3.937 15 N -0.277 5.277 16 C -0.110 4.110 17 C 0.090 3.910 18 C 0.156 3.844 19 N -0.603 5.603 20 C -0.217 4.217 21 H 0.080 0.920 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.112 3.888 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.156 0.844 38 H 0.194 0.806 39 H 0.160 0.840 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -17.150 17.793 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.055 4.055 3 N -0.323 5.323 4 C 0.334 3.666 5 O -0.366 6.366 6 C -0.062 4.062 7 C -0.210 4.210 8 C -0.030 4.030 9 N -0.213 5.213 10 C 0.139 3.861 11 N -0.104 5.104 12 C -0.064 4.064 13 C -0.295 4.295 14 C -0.126 4.126 15 N -0.095 5.095 16 C -0.133 4.133 17 C -0.013 4.013 18 C 0.030 3.970 19 N -0.329 5.329 20 C -0.344 4.344 21 H 0.098 0.902 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.015 4.015 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.194 0.806 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.174 0.826 38 H 0.211 0.789 39 H 0.177 0.823 40 H 0.125 0.875 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.260 -16.177 17.138 24.385 hybrid contribution 0.319 0.780 -0.397 0.932 sum -5.941 -15.397 16.741 23.508 Atomic orbital electron populations 1.22311 0.95722 1.02391 1.03358 1.22445 0.94593 0.83862 1.04592 1.48003 1.63241 1.13504 1.07523 1.18028 0.78878 0.87049 0.82678 1.90908 1.46420 1.14694 1.84591 1.20464 0.95475 0.95061 0.95203 1.23421 1.01869 0.95572 1.00101 1.22504 0.93963 0.98748 0.87815 1.66676 1.06083 1.15244 1.33252 1.17498 0.90060 0.92213 0.86380 1.45802 1.28610 1.23219 1.12772 1.22902 0.98947 0.98720 0.85843 1.21671 1.03392 1.00853 1.03561 1.24220 0.98889 0.98238 0.91278 1.77631 1.04198 1.05470 1.22234 1.21710 0.99842 1.00729 0.90982 1.24178 1.02364 0.91494 0.83296 1.22703 0.91371 0.85258 0.97666 1.45680 1.05637 1.30571 1.51011 1.19033 0.95016 1.02341 1.18048 0.90221 1.24784 0.95541 0.99284 1.00967 1.69832 1.00588 1.38598 1.47675 0.86044 0.77688 0.81931 0.80092 1.20501 1.21763 1.21782 1.22943 0.91957 0.90367 0.96251 0.91134 0.91190 0.91969 0.90145 0.88124 0.80577 0.81032 0.80063 0.82622 0.78932 0.82280 0.87511 0.93114 0.91319 0.93782 0.94464 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.12 37.16 0.34 -1.08 16 2 C 0.07 0.67 5.59 -4.04 -0.02 0.65 16 3 N -0.59 -9.02 2.74 -168.90 -0.46 -9.48 16 4 C 0.55 9.45 6.92 -12.19 -0.08 9.37 16 5 O -0.49 -10.93 12.50 5.36 0.07 -10.86 16 6 C -0.05 -0.70 5.62 -104.68 -0.59 -1.28 16 7 C -0.19 -1.81 7.60 -39.01 -0.30 -2.11 16 8 C 0.13 1.09 11.17 -17.61 -0.20 0.89 16 9 N -0.50 -5.63 9.83 -12.33 -0.12 -5.75 16 10 C 0.37 4.94 7.55 -154.42 -1.17 3.77 16 11 N -0.33 -4.34 3.81 -12.12 -0.05 -4.38 16 12 C 0.08 0.79 11.10 -16.83 -0.19 0.61 16 13 C -0.27 -2.36 10.80 -39.99 -0.43 -2.79 16 14 C 0.06 0.64 12.02 -17.34 -0.21 0.43 16 15 N -0.28 -3.87 11.83 30.64 0.36 -3.51 16 16 C -0.11 -1.63 9.28 -38.82 -0.36 -1.99 16 17 C 0.09 1.71 4.59 -70.15 -0.32 1.39 16 18 C 0.16 3.92 6.79 -2.84 -0.02 3.90 16 19 N -0.60 -16.41 3.70 -177.90 -0.66 -17.07 16 20 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -28.42 11.39 55.49 0.63 -27.79 16 24 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 C 0.11 2.47 8.27 -2.97 -0.02 2.44 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 7.13 -51.93 -0.37 0.13 16 32 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.10 0.84 3.98 -51.98 -0.21 0.64 16 34 H 0.18 1.28 2.68 -52.49 -0.14 1.14 16 35 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 36 H 0.18 1.41 8.05 -52.49 -0.42 0.98 16 37 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.16 2.69 7.61 -52.49 -0.40 2.30 16 40 H 0.11 1.85 8.07 -51.93 -0.42 1.43 16 41 H 0.05 1.40 5.76 -51.93 -0.30 1.10 16 42 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 1.18 6.25 -51.93 -0.32 0.86 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -37.77 368.85 -8.98 -46.74 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.46 Total: 1.29 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -3.83 Total: 7.28 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.29 Total: -67.98 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.77 -8.98 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951722837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.077 kcal (2) G-P(sol) polarization free energy of solvation -37.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds