Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47047 * 2 1 4 4 C 1.34781 * 119.99943 * 82.73867 * 3 2 1 5 5 O 1.21514 * 119.99784 * 183.72600 * 4 3 2 6 6 C 1.48166 * 119.99997 * 3.72586 * 4 3 2 7 7 C 1.39229 * 119.68463 * 173.15416 * 6 4 3 8 8 C 1.38714 * 119.18946 * 179.97438 * 7 6 4 9 9 C 1.38413 * 118.55168 * 359.75620 * 8 7 6 10 10 C 1.39262 * 119.30162 * 0.49013 * 9 8 7 11 11 N 1.39812 * 119.61975 * 179.77088 * 10 9 8 12 12 C 1.35843 * 126.10885 * 179.72606 * 11 10 9 13 13 C 1.35272 * 107.61750 * 179.75362 * 12 11 10 14 14 C 1.39959 * 107.96919 * 0.42546 * 13 12 11 15 15 N 1.30820 * 108.36743 * 359.56865 * 14 13 12 16 16 N 1.31978 * 120.76206 * 359.49374 * 10 9 8 17 17 C 1.46502 * 120.00214 * 262.73503 * 3 2 1 18 18 C 1.53942 * 113.74546 * 223.16352 * 17 3 2 19 19 N 1.47805 * 86.03698 * 222.08434 * 18 17 3 20 20 C 1.36944 * 134.45285 * 204.64251 * 19 18 17 21 21 H 1.08007 * 119.99588 * 184.80459 * 20 19 18 22 22 C 1.38804 * 120.00444 * 4.80844 * 20 19 18 23 23 N 1.31626 * 119.99794 * 5.08332 * 22 20 19 24 24 Si 1.86801 * 120.00380 * 185.08780 * 22 20 19 25 25 H 1.48504 * 109.46779 * 94.99649 * 24 22 20 26 26 H 1.48493 * 109.47236 * 214.99716 * 24 22 20 27 27 H 1.48499 * 109.46875 * 334.99834 * 24 22 20 28 28 C 1.47576 * 91.05283 * 24.54908 * 19 18 17 29 29 H 1.09004 * 109.47315 * 300.00358 * 1 2 3 30 30 H 1.09005 * 109.47112 * 60.00292 * 1 2 3 31 31 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47128 * 240.00318 * 2 1 3 33 33 H 1.08998 * 109.47021 * 120.00093 * 2 1 3 34 34 H 1.08003 * 120.40701 * 0.02562 * 7 6 4 35 35 H 1.07999 * 120.72005 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.34367 * 180.24211 * 9 8 7 37 37 H 1.08004 * 126.18964 * 0.02562 * 12 11 10 38 38 H 1.07999 * 126.01999 * 180.29809 * 13 12 11 39 39 H 1.07999 * 125.81471 * 179.83209 * 14 13 12 40 40 H 1.09006 * 112.94161 * 354.75704 * 17 3 2 41 41 H 1.09000 * 113.76799 * 336.35289 * 18 17 3 42 42 H 1.09007 * 113.76901 * 107.74542 * 18 17 3 43 43 H 0.96997 * 119.99691 * 179.97438 * 23 22 20 44 44 H 1.09005 * 113.77107 * 221.15190 * 28 19 18 45 45 H 1.09000 * 113.77047 * 89.75351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1038 2.0657 1.1579 5 8 2.4441 3.2322 1.1503 6 6 1.7829 1.3959 2.4399 7 6 2.0096 2.0618 3.6414 8 6 1.7049 1.4253 4.8356 9 6 1.1789 0.1459 4.7879 10 6 0.9821 -0.4644 3.5517 11 7 0.4557 -1.7585 3.4959 12 6 0.2059 -2.4732 2.3680 13 6 -0.2921 -3.6729 2.7455 14 6 -0.3591 -3.6922 4.1433 15 7 0.0911 -2.5493 4.5934 16 7 1.2816 0.1667 2.4320 17 6 2.4137 2.0184 -1.2585 18 6 3.7180 2.8301 -1.1593 19 7 3.0270 3.8470 -1.9798 20 6 3.4421 4.8389 -2.8278 21 1 2.7207 5.5162 -3.2607 22 6 4.7898 4.9739 -3.1311 23 7 5.6566 4.0895 -2.6848 24 14 5.3737 6.4106 -4.1725 25 1 5.8265 7.5126 -3.2860 26 1 6.5017 5.9722 -5.0329 27 1 4.2568 6.8891 -5.0262 28 6 1.7108 3.3627 -1.5203 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4168 3.0621 3.6436 35 1 1.8704 1.9189 5.7818 36 1 0.9276 -0.3751 5.7000 37 1 0.3783 -2.1448 1.3537 38 1 -0.5882 -4.4741 2.0845 39 1 -0.7171 -4.5126 4.7476 40 1 2.3853 1.3356 -2.1078 41 1 3.9510 3.1653 -0.1487 42 1 4.5658 2.3622 -1.6598 43 1 6.5983 4.1836 -2.8971 44 1 0.9590 3.3193 -2.3083 45 1 1.3529 3.8548 -0.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951733102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 188.857549 kcal Electronic energy + Delta-G solvation = -29850.236878 eV Core-core repulsion = 25873.806762 eV Total energy + Delta-G solvation = -3976.430115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.91769 -40.78278 -39.39746 -36.86313 -35.52763 -33.91009 -32.84888 -31.93651 -30.73632 -30.05016 -29.69935 -27.40860 -25.23113 -24.64933 -24.41185 -23.20327 -23.15205 -21.49689 -21.21335 -20.20565 -19.08426 -18.29726 -16.98950 -16.64528 -16.42918 -16.23643 -15.91926 -15.34653 -15.12025 -14.95911 -14.64885 -14.30039 -14.12425 -13.87805 -13.75461 -13.60637 -13.15744 -13.13789 -12.68911 -12.47122 -12.34915 -12.19789 -11.63579 -11.40758 -11.26376 -11.19655 -11.14258 -10.81553 -10.76000 -10.63440 -10.23509 -10.07966 -9.94409 -9.90133 -9.49812 -9.44261 -9.20324 -8.64450 -8.59844 -8.05862 -6.72028 -5.66706 -2.99024 0.28211 0.58717 1.72709 1.75911 2.43465 2.84854 3.12867 3.44990 3.49824 3.51569 3.68237 3.83013 4.10192 4.48623 4.55330 4.57891 4.65787 4.71643 4.93082 5.07435 5.19755 5.21489 5.31039 5.32940 5.40109 5.51926 5.59801 5.60553 5.66525 5.73793 5.79620 5.87048 5.90883 6.01960 6.07861 6.19221 6.36867 6.39990 6.62434 6.66338 6.76487 6.93440 7.00085 7.38318 7.46487 7.62388 7.64694 7.76401 8.08028 8.43574 9.13461 9.80110 10.71061 11.49147 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.002704 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.693589 B =10352.928591 C =11094.634275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.578 5.578 4 C 0.560 3.440 5 O -0.501 6.501 6 C 0.122 3.878 7 C -0.123 4.123 8 C -0.057 4.057 9 C -0.148 4.148 10 C 0.358 3.642 11 N -0.323 5.323 12 C 0.076 3.924 13 C -0.267 4.267 14 C 0.063 3.937 15 N -0.286 5.286 16 N -0.469 5.469 17 C 0.089 3.911 18 C 0.148 3.852 19 N -0.603 5.603 20 C -0.214 4.214 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.113 3.887 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.185 0.815 38 H 0.157 0.843 39 H 0.192 0.808 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 -17.155 15.392 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.310 5.310 4 C 0.345 3.655 5 O -0.375 6.375 6 C -0.017 4.017 7 C -0.145 4.145 8 C -0.083 4.083 9 C -0.171 4.171 10 C 0.129 3.871 11 N -0.101 5.101 12 C -0.065 4.065 13 C -0.295 4.295 14 C -0.125 4.125 15 N -0.105 5.105 16 N -0.186 5.186 17 C -0.014 4.014 18 C 0.022 3.978 19 N -0.329 5.329 20 C -0.342 4.342 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.014 4.014 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.175 0.825 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.202 0.798 38 H 0.174 0.826 39 H 0.209 0.791 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.952 -15.942 15.355 25.155 hybrid contribution 0.193 0.484 -0.493 0.717 sum -11.759 -15.457 14.863 24.456 Atomic orbital electron populations 1.22119 0.96344 1.01066 1.01920 1.22105 0.94373 0.82845 1.03515 1.48010 1.62313 1.13841 1.06822 1.17731 0.79288 0.86042 0.82437 1.90892 1.45900 1.14973 1.85763 1.21259 0.96449 0.88636 0.95338 1.22212 0.98709 1.02246 0.91301 1.21561 0.94335 0.93264 0.99142 1.21776 1.01316 0.96216 0.97772 1.17802 0.95366 0.83443 0.90481 1.45746 1.48668 1.10492 1.05218 1.23148 0.97989 0.91972 0.93434 1.21686 1.12900 0.99449 0.95491 1.24152 0.97614 0.95691 0.95067 1.77441 1.20739 1.04081 1.08270 1.67476 1.13941 1.09599 1.27568 1.24202 1.00086 0.93592 0.83564 1.22834 0.92803 0.86813 0.95339 1.45607 1.00546 1.38141 1.48611 1.18990 0.91894 1.05561 1.17794 0.90385 1.24769 0.95799 0.99068 1.00999 1.69830 1.01710 1.35499 1.49614 0.86099 0.78215 0.81940 0.79530 1.21734 1.21770 1.20618 1.22929 0.90519 0.91075 0.96874 0.92618 0.92714 0.92469 0.91242 0.87609 0.82498 0.83098 0.83250 0.79805 0.82583 0.79084 0.87556 0.93140 0.90636 0.93810 0.94496 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.96 37.16 0.33 -1.38 16 2 C 0.09 1.17 5.52 -4.04 -0.02 1.15 16 3 N -0.58 -9.50 2.75 -168.90 -0.46 -9.96 16 4 C 0.56 9.71 7.02 -12.18 -0.09 9.62 16 5 O -0.50 -10.58 12.04 5.35 0.06 -10.52 16 6 C 0.12 1.69 6.52 -83.02 -0.54 1.14 16 7 C -0.12 -1.44 9.63 -39.04 -0.38 -1.81 16 8 C -0.06 -0.51 10.16 -39.34 -0.40 -0.90 16 9 C -0.15 -1.45 9.70 -39.14 -0.38 -1.83 16 10 C 0.36 4.10 7.55 -154.53 -1.17 2.94 16 11 N -0.32 -3.53 3.81 -12.10 -0.05 -3.58 16 12 C 0.08 0.70 11.10 -16.83 -0.19 0.51 16 13 C -0.27 -2.00 10.80 -39.99 -0.43 -2.43 16 14 C 0.06 0.49 12.02 -17.34 -0.21 0.28 16 15 N -0.29 -2.99 11.83 30.64 0.36 -2.63 16 16 N -0.47 -5.75 3.86 -8.85 -0.03 -5.78 16 17 C 0.09 1.75 4.60 -70.16 -0.32 1.43 16 18 C 0.15 3.72 6.99 -2.84 -0.02 3.70 16 19 N -0.60 -16.43 3.70 -177.91 -0.66 -17.08 16 20 C -0.21 -6.30 10.69 -15.06 -0.16 -6.46 16 21 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.92 -28.14 11.29 55.49 0.63 -27.51 16 24 Si 0.91 22.89 29.56 -169.99 -5.02 17.86 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.11 2.53 8.27 -2.97 -0.02 2.50 16 29 H 0.05 0.69 6.79 -51.93 -0.35 0.33 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.48 6.65 -51.93 -0.35 0.13 16 32 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 33 H 0.11 1.28 4.81 -52.63 -0.25 1.03 16 34 H 0.16 1.82 7.65 -52.48 -0.40 1.42 16 35 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.15 1.28 7.68 -52.48 -0.40 0.88 16 37 H 0.19 1.47 5.11 -52.48 -0.27 1.20 16 38 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.11 1.96 7.89 -51.93 -0.41 1.55 16 41 H 0.05 1.36 5.69 -51.93 -0.30 1.07 16 42 H 0.08 2.07 6.87 -51.93 -0.36 1.72 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.15 6.32 -51.93 -0.33 0.82 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -35.53 365.09 -9.24 -44.77 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.48 Total: 0.86 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -4.09 Total: 8.06 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.21 Total: -66.54 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.06 Total: -10.52 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.53 -9.24 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951733102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.625 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds