Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47230 * 2 1 4 4 C 1.34776 * 119.99924 * 270.68983 * 3 2 1 5 5 O 1.21628 * 119.99927 * 185.49419 * 4 3 2 6 6 C 1.47281 * 120.00116 * 5.50118 * 4 3 2 7 7 C 1.37959 * 126.80915 * 7.27612 * 6 4 3 8 8 N 1.34158 * 107.88949 * 179.97438 * 7 6 4 9 9 H 0.96996 * 125.16239 * 180.02562 * 8 7 6 10 10 N 1.39763 * 109.67207 * 0.02562 * 8 7 6 11 11 C 1.31358 * 109.08366 * 359.74442 * 10 8 7 12 12 C 1.48295 * 126.51777 * 180.26322 * 11 10 8 13 13 C 1.39811 * 120.54187 * 325.14480 * 12 11 10 14 14 C 1.38396 * 118.30995 * 180.02562 * 13 12 11 15 15 C 1.38327 * 119.28912 * 359.97438 * 14 13 12 16 16 N 1.31892 * 121.03634 * 0.02562 * 15 14 13 17 17 C 1.31740 * 121.85438 * 359.65244 * 16 15 14 18 18 C 1.46505 * 120.00132 * 90.96995 * 3 2 1 19 19 C 1.53942 * 113.74018 * 222.68046 * 18 3 2 20 20 N 1.47820 * 86.03550 * 222.08156 * 19 18 3 21 21 C 1.36936 * 134.45768 * 204.64390 * 20 19 18 22 22 H 1.08007 * 119.99734 * 179.86725 * 21 20 19 23 23 C 1.38808 * 120.00330 * 359.87141 * 21 20 19 24 24 N 1.31624 * 119.99650 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00336 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47290 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47019 * 119.99864 * 25 23 21 28 28 H 1.48497 * 109.47289 * 239.99563 * 25 23 21 29 29 C 1.47579 * 91.04909 * 24.55013 * 20 19 18 30 30 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47038 * 300.00382 * 1 2 3 32 32 H 1.09000 * 109.46728 * 60.00043 * 1 2 3 33 33 H 1.09002 * 109.47038 * 239.99617 * 2 1 3 34 34 H 1.09000 * 109.46728 * 119.99957 * 2 1 3 35 35 H 1.08005 * 126.05707 * 0.02562 * 7 6 4 36 36 H 1.08001 * 120.84055 * 359.97438 * 13 12 11 37 37 H 1.08002 * 120.35672 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.48214 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.70388 * 180.33512 * 17 16 15 40 40 H 1.09004 * 112.93994 * 354.27242 * 18 3 2 41 41 H 1.08995 * 113.77167 * 336.34338 * 19 18 3 42 42 H 1.09001 * 113.77019 * 107.74704 * 19 18 3 43 43 H 0.97004 * 119.99868 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.77275 * 221.15337 * 29 20 19 45 45 H 1.08998 * 113.77306 * 89.75407 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2298 2.0211 -1.1671 5 8 2.7289 3.1303 -1.1708 6 6 1.8563 1.3775 -2.4381 7 6 1.1605 0.1964 -2.5934 8 7 1.0296 -0.0350 -3.9084 9 1 0.5795 -0.8004 -4.2988 10 7 1.6403 0.9942 -4.6303 11 6 2.1456 1.8675 -3.7892 12 6 2.8728 3.1115 -4.1396 13 6 3.7014 3.1572 -5.2648 14 6 4.3584 4.3418 -5.5484 15 6 4.1757 5.4327 -4.7177 16 7 3.3874 5.3596 -3.6628 17 6 2.7366 4.2559 -3.3563 18 6 2.2828 2.0646 1.2686 19 6 1.7850 3.5209 1.3035 20 7 3.0625 3.8334 1.9783 21 6 3.4821 4.8233 2.8264 22 1 4.4983 4.8260 3.1923 23 6 2.6015 5.8232 3.2158 24 7 1.3633 5.8200 2.7694 25 14 3.1737 7.1730 4.3732 26 1 4.5987 6.9508 4.7268 27 1 3.0297 8.4916 3.7053 28 1 2.3476 7.1503 5.6069 29 6 3.7030 2.6495 1.3732 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7865 -0.4305 -1.7973 36 1 3.8261 2.2899 -5.8961 37 1 5.0062 4.4140 -6.4095 38 1 4.6866 6.3587 -4.9363 39 1 2.0958 4.2364 -2.4871 40 1 1.9847 1.4779 2.1375 41 1 1.6863 3.9752 0.3176 42 1 0.9069 3.6701 1.9319 43 1 0.7477 6.5185 3.0418 44 1 4.3534 2.1042 2.0571 45 1 4.1689 2.8472 0.4079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000956960605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = 180.228568 kcal Electronic energy + Delta-G solvation = -30307.788587 eV Core-core repulsion = 26330.984291 eV Total energy + Delta-G solvation = -3976.804296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52083 -39.68307 -39.59751 -36.71183 -35.79450 -33.35483 -32.14089 -31.79108 -30.63517 -30.11249 -29.85239 -27.21098 -24.60370 -24.25231 -23.91571 -23.43155 -23.29857 -21.92195 -20.77271 -20.00591 -18.81691 -17.73180 -16.89831 -16.66253 -16.37731 -16.01025 -15.56295 -15.21070 -15.19304 -14.69618 -14.60462 -14.25465 -14.07487 -13.70014 -13.56065 -13.23008 -12.94375 -12.81292 -12.55412 -12.29568 -12.23946 -11.82640 -11.57806 -11.43980 -11.22724 -11.16614 -11.02249 -10.76666 -10.54915 -10.39699 -10.02116 -9.85719 -9.59339 -9.37375 -9.24862 -9.17203 -8.92280 -8.56053 -8.39679 -8.04302 -6.65082 -5.60812 -2.90663 0.90575 1.40982 1.48254 2.27219 2.48820 3.27960 3.49568 3.55223 3.57309 3.59657 4.06037 4.15551 4.40813 4.61622 4.72935 4.82276 4.87071 4.93732 5.00759 5.04565 5.13997 5.19600 5.26371 5.37228 5.42981 5.54192 5.61575 5.64487 5.67473 5.78416 5.91014 6.02035 6.06155 6.12411 6.25878 6.37664 6.44901 6.69970 6.71784 6.87799 6.95124 7.07415 7.30473 7.42443 7.69134 7.72548 7.86105 8.13857 8.27769 8.67592 9.20952 9.87125 10.78316 11.56740 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.004206 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.092375 B = 6656.248021 C = 8823.734050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 N -0.596 5.596 4 C 0.583 3.417 5 O -0.506 6.506 6 C -0.269 4.269 7 C 0.075 3.925 8 N -0.468 5.468 9 H 0.442 0.558 10 N -0.288 5.288 11 C 0.177 3.823 12 C -0.089 4.089 13 C -0.047 4.047 14 C -0.194 4.194 15 C 0.109 3.891 16 N -0.482 5.482 17 C 0.170 3.830 18 C 0.091 3.909 19 C 0.159 3.841 20 N -0.603 5.603 21 C -0.213 4.213 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.111 3.889 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.214 0.786 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.187 0.813 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.251 0.749 44 H 0.034 0.966 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -17.155 -15.305 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.039 4.039 3 N -0.328 5.328 4 C 0.372 3.628 5 O -0.382 6.382 6 C -0.284 4.284 7 C -0.073 4.073 8 N -0.174 5.174 9 H 0.286 0.714 10 N -0.109 5.109 11 C 0.008 3.992 12 C -0.093 4.093 13 C -0.074 4.074 14 C -0.214 4.214 15 C -0.048 4.048 16 N -0.190 5.190 17 C 0.012 3.988 18 C -0.012 4.012 19 C 0.033 3.967 20 N -0.329 5.329 21 C -0.341 4.341 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.016 4.016 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.881 -15.842 -15.754 22.421 hybrid contribution 0.245 -0.446 0.640 0.818 sum -1.636 -16.288 -15.114 22.280 Atomic orbital electron populations 1.22501 0.96183 1.02119 1.04063 1.22029 0.94224 0.84303 1.03323 1.47925 1.65514 1.13064 1.06344 1.17142 0.78594 0.85147 0.81912 1.90792 1.42843 1.18813 1.85776 1.21508 1.13585 0.99309 0.94040 1.24563 0.97323 0.97686 0.87744 1.46014 1.45533 1.21411 1.04421 0.71408 1.77274 1.16042 0.98836 1.18718 1.21574 0.95205 0.93025 0.89373 1.18731 1.00442 0.92076 0.98074 1.21544 0.93322 0.98065 0.94516 1.21967 1.02890 0.94173 1.02357 1.22979 0.93829 0.98127 0.89898 1.67948 1.07354 1.27541 1.16205 1.23903 0.93744 0.85595 0.95570 1.24110 0.99133 0.94954 0.83027 1.22700 0.91263 0.85985 0.96775 1.45667 1.08938 1.27465 1.50797 1.19016 0.96112 1.01482 1.17538 0.90399 1.24738 0.96089 0.98771 1.00872 1.69837 1.04198 1.34897 1.47779 0.86081 0.77623 0.82161 0.80138 1.20573 1.21792 1.21907 1.22951 0.93508 0.88461 0.96635 0.91496 0.90718 0.91735 0.90057 0.89884 0.76974 0.85033 0.84907 0.82958 0.79716 0.87952 0.92730 0.91681 0.93896 0.94821 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 8.81 37.16 0.33 -1.17 16 2 C 0.09 0.80 5.59 -4.04 -0.02 0.77 16 3 N -0.60 -8.89 2.73 -169.22 -0.46 -9.35 16 4 C 0.58 9.81 7.05 -12.58 -0.09 9.72 16 5 O -0.51 -10.59 7.95 5.25 0.04 -10.55 16 6 C -0.27 -3.71 6.10 -102.95 -0.63 -4.34 16 7 C 0.08 0.69 8.61 -16.64 -0.14 0.55 16 8 N -0.47 -4.01 7.20 30.81 0.22 -3.79 16 9 H 0.44 1.95 8.96 -182.86 -1.64 0.31 16 10 N -0.29 -3.61 12.64 34.57 0.44 -3.18 16 11 C 0.18 2.58 6.96 -80.56 -0.56 2.02 16 12 C -0.09 -1.39 5.78 -104.76 -0.61 -1.99 16 13 C -0.05 -0.62 9.92 -38.94 -0.39 -1.01 16 14 C -0.19 -2.32 10.10 -39.49 -0.40 -2.71 16 15 C 0.11 1.53 11.17 -17.49 -0.20 1.34 16 16 N -0.48 -8.76 10.35 -12.96 -0.13 -8.90 16 17 C 0.17 3.08 9.04 -17.18 -0.16 2.92 16 18 C 0.09 1.71 4.58 -70.14 -0.32 1.39 16 19 C 0.16 3.91 6.79 -2.84 -0.02 3.90 16 20 N -0.60 -16.34 3.70 -177.87 -0.66 -17.00 16 21 C -0.21 -6.31 10.70 -15.06 -0.16 -6.47 16 22 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -28.41 11.39 55.49 0.63 -27.78 16 25 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 C 0.11 2.47 8.27 -2.97 -0.02 2.45 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.54 6.28 -51.93 -0.33 0.21 16 33 H 0.08 0.60 4.79 -51.93 -0.25 0.36 16 34 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 35 H 0.21 1.25 3.21 -52.48 -0.17 1.08 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.19 3.75 5.43 -52.49 -0.29 3.46 16 40 H 0.10 1.76 8.03 -51.93 -0.42 1.34 16 41 H 0.06 1.46 5.73 -51.93 -0.30 1.17 16 42 H 0.06 1.75 7.17 -51.93 -0.37 1.38 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 1.23 6.28 -51.93 -0.33 0.90 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -38.03 360.45 -9.57 -47.60 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.58 Total: 2.35 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -3.48 Total: 7.01 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: 0.04 Total: -69.99 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.04 Total: -10.55 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.03 -9.57 -47.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956960605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.829 kcal (2) G-P(sol) polarization free energy of solvation -38.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds