Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46968 * 2 1 4 4 C 1.34772 * 119.99687 * 98.30625 * 3 2 1 5 5 O 1.21518 * 119.99671 * 186.35080 * 4 3 2 6 6 C 1.48156 * 120.00372 * 6.34647 * 4 3 2 7 7 C 1.39953 * 120.89161 * 331.13074 * 6 4 3 8 8 C 1.38042 * 119.13501 * 179.97438 * 7 6 4 9 9 N 1.31850 * 120.98328 * 359.97309 * 8 7 6 10 10 C 1.32224 * 121.97448 * 0.02562 * 9 8 7 11 11 N 1.39846 * 119.62669 * 180.02562 * 10 9 8 12 12 C 1.37172 * 126.48727 * 4.71161 * 11 10 9 13 13 C 1.34615 * 106.83073 * 179.87582 * 12 11 10 14 14 N 1.34155 * 108.21639 * 0.39287 * 13 12 11 15 15 C 1.30485 * 109.37115 * 359.74556 * 14 13 12 16 16 C 1.38906 * 120.74913 * 0.02562 * 10 9 8 17 17 C 1.46497 * 120.00260 * 278.30374 * 3 2 1 18 18 C 1.53945 * 113.74449 * 222.90735 * 17 3 2 19 19 N 1.47818 * 86.03319 * 222.08455 * 18 17 3 20 20 C 1.36943 * 134.45311 * 204.64036 * 19 18 17 21 21 H 1.07993 * 119.99621 * 184.81938 * 20 19 18 22 22 C 1.38810 * 119.99979 * 4.82208 * 20 19 18 23 23 N 1.31621 * 119.99794 * 5.06430 * 22 20 19 24 24 Si 1.86802 * 120.00034 * 185.05934 * 22 20 19 25 25 H 1.48498 * 109.46774 * 95.00126 * 24 22 20 26 26 H 1.48491 * 109.47137 * 214.99934 * 24 22 20 27 27 H 1.48500 * 109.46856 * 335.00604 * 24 22 20 28 28 C 1.47572 * 91.05212 * 24.54784 * 19 18 17 29 29 H 1.09011 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47173 * 299.99684 * 1 2 3 31 31 H 1.08999 * 109.47411 * 59.99909 * 1 2 3 32 32 H 1.09001 * 109.47173 * 240.00316 * 2 1 3 33 33 H 1.08994 * 109.47414 * 120.00575 * 2 1 3 34 34 H 1.07999 * 120.42685 * 359.97438 * 7 6 4 35 35 H 1.07997 * 119.50461 * 179.97438 * 8 7 6 36 36 H 1.07998 * 126.58492 * 0.02562 * 12 11 10 37 37 H 1.07998 * 125.89713 * 180.13699 * 13 12 11 38 38 H 1.07993 * 125.72161 * 179.97438 * 15 14 13 39 39 H 1.08007 * 120.53153 * 180.02562 * 16 10 9 40 40 H 1.09001 * 112.94358 * 354.49741 * 17 3 2 41 41 H 1.08998 * 113.76383 * 336.34371 * 18 17 3 42 42 H 1.08990 * 113.77337 * 107.74346 * 18 17 3 43 43 H 0.97006 * 119.99527 * 179.97438 * 23 22 20 44 44 H 1.09010 * 113.76976 * 221.15486 * 28 19 18 45 45 H 1.09000 * 113.77581 * 89.75707 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4018 1.9603 1.1550 5 8 2.6968 3.1390 1.1750 6 6 2.4637 1.1600 2.4002 7 6 1.6217 0.0581 2.5887 8 6 1.7104 -0.6624 3.7628 9 7 2.5735 -0.3271 4.7015 10 6 3.3883 0.7056 4.5668 11 7 4.2852 1.0170 5.5936 12 6 4.4921 0.2965 6.7423 13 6 5.4369 0.9478 7.4461 14 7 5.7947 2.0412 6.7560 15 6 5.1126 2.0942 5.6450 16 6 3.3636 1.4845 3.4170 17 6 2.0897 2.1330 -1.2554 18 6 3.3831 2.9525 -1.4144 19 7 2.5157 4.0273 -1.9412 20 6 2.7118 5.0964 -2.7741 21 1 1.9101 5.7982 -2.9497 22 6 3.9412 5.2779 -3.3926 23 7 4.8855 4.3709 -3.2587 24 14 4.2552 6.8094 -4.4152 25 1 4.9244 7.8359 -3.5764 26 1 5.1275 6.4654 -5.5666 27 1 2.9632 7.3441 -4.9152 28 6 1.3536 3.4843 -1.2114 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9118 -0.2247 1.8256 35 1 1.0632 -1.5136 3.9148 36 1 3.9945 -0.6190 7.0264 37 1 5.8350 0.6449 8.4033 38 1 5.1917 2.8649 4.8927 39 1 4.0310 2.3270 3.3105 40 1 1.8438 1.5275 -2.1278 41 1 3.8649 3.2007 -0.4687 42 1 4.0745 2.5437 -2.1511 43 1 5.7445 4.4977 -3.6913 44 1 0.4276 3.4991 -1.7863 45 1 1.2379 3.8890 -0.2059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957399562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = 181.759116 kcal Electronic energy + Delta-G solvation = -29404.181637 eV Core-core repulsion = 25427.443710 eV Total energy + Delta-G solvation = -3976.737927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61468 -41.12945 -39.64977 -37.03470 -36.15192 -34.37455 -33.01708 -32.05655 -30.77354 -30.24953 -29.48247 -27.58233 -25.34386 -24.76249 -24.62185 -23.42243 -23.21800 -21.69641 -21.22095 -20.43819 -19.52066 -18.12805 -17.13532 -16.95709 -16.83610 -16.45346 -16.04548 -15.49542 -15.21800 -14.93753 -14.72748 -14.33645 -14.20031 -14.11471 -13.99681 -13.86537 -13.62799 -13.43590 -13.06906 -12.54781 -12.44607 -12.07706 -11.79203 -11.61521 -11.41488 -11.36581 -10.92391 -10.86099 -10.65855 -10.42274 -10.36336 -10.30492 -10.11565 -9.97440 -9.58125 -9.45535 -9.09375 -8.73756 -8.71024 -8.29928 -6.80233 -5.73541 -3.06144 0.19994 0.45285 1.85070 2.08851 2.78070 2.87950 2.93632 3.41205 3.42579 3.46475 3.47950 3.83536 4.05623 4.26952 4.38515 4.45052 4.50280 4.56051 4.71578 4.92237 4.94445 4.98753 5.14649 5.17749 5.21999 5.25066 5.38456 5.47595 5.49206 5.56698 5.60554 5.61054 5.75998 5.83174 5.93768 6.01046 6.26796 6.40727 6.45639 6.53540 6.80956 6.83735 7.29110 7.30879 7.45085 7.54627 7.58328 7.72019 8.00759 8.23564 9.06590 9.73446 10.62707 11.42271 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.002939 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.069042 B = 9523.702891 C =11336.232029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 N -0.588 5.588 4 C 0.547 3.453 5 O -0.495 6.495 6 C -0.045 4.045 7 C -0.186 4.186 8 C 0.129 3.871 9 N -0.489 5.489 10 C 0.342 3.658 11 N -0.410 5.410 12 C -0.028 4.028 13 C -0.031 4.031 14 N -0.478 5.478 15 C 0.199 3.801 16 C -0.126 4.126 17 C 0.091 3.909 18 C 0.148 3.852 19 N -0.602 5.602 20 C -0.217 4.217 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.112 3.888 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.215 0.785 39 H 0.155 0.845 40 H 0.108 0.892 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.253 0.747 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 -16.690 14.954 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.055 4.055 3 N -0.321 5.321 4 C 0.333 3.667 5 O -0.369 6.369 6 C -0.056 4.056 7 C -0.206 4.206 8 C -0.029 4.029 9 N -0.202 5.202 10 C 0.114 3.886 11 N -0.093 5.093 12 C -0.158 4.158 13 C -0.176 4.176 14 N -0.195 5.195 15 C -0.083 4.083 16 C -0.149 4.149 17 C -0.012 4.012 18 C 0.022 3.978 19 N -0.328 5.328 20 C -0.345 4.345 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.193 0.807 38 H 0.231 0.769 39 H 0.172 0.828 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.020 -15.761 15.680 23.315 hybrid contribution -0.453 0.625 -1.464 1.655 sum -7.472 -15.137 14.216 22.069 Atomic orbital electron populations 1.22312 0.95631 1.02484 1.03397 1.22456 0.94660 0.83804 1.04629 1.48045 1.62914 1.13527 1.07572 1.18008 0.78991 0.87025 0.82669 1.90904 1.46743 1.14630 1.84605 1.20439 0.95182 0.94940 0.95085 1.23478 1.01651 0.95326 1.00099 1.22599 0.93944 0.98630 0.87740 1.66820 1.05491 1.15146 1.32720 1.17987 0.90929 0.92704 0.86971 1.43142 1.29642 1.21187 1.15308 1.22900 1.03806 1.01243 0.87818 1.22419 0.99566 0.93926 1.01676 1.70370 1.24305 1.20496 1.04315 1.25512 0.91617 0.92063 0.99109 1.21645 1.00798 1.00954 0.91521 1.24218 1.02313 0.91475 0.83209 1.22811 0.91759 0.85587 0.97606 1.45597 1.05386 1.30835 1.50966 1.18987 0.97708 1.00393 1.17403 0.90321 1.24774 0.96347 0.98728 1.00647 1.69819 1.05012 1.34062 1.47697 0.86093 0.77748 0.82485 0.79411 1.21642 1.21714 1.20586 1.22957 0.91976 0.90249 0.96284 0.91121 0.91974 0.91054 0.90013 0.88202 0.80445 0.80990 0.80119 0.80686 0.76909 0.82775 0.87427 0.93448 0.90496 0.93730 0.94451 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.12 37.15 0.34 -0.94 16 2 C 0.07 0.60 5.59 -4.04 -0.02 0.58 16 3 N -0.59 -8.28 2.74 -168.91 -0.46 -8.74 16 4 C 0.55 8.48 6.92 -12.19 -0.08 8.40 16 5 O -0.49 -9.95 12.50 5.35 0.07 -9.89 16 6 C -0.04 -0.53 5.62 -104.67 -0.59 -1.12 16 7 C -0.19 -1.54 7.60 -39.01 -0.30 -1.84 16 8 C 0.13 0.98 11.17 -17.62 -0.20 0.78 16 9 N -0.49 -5.03 9.87 -12.34 -0.12 -5.15 16 10 C 0.34 3.91 7.50 -154.43 -1.16 2.75 16 11 N -0.41 -4.74 2.98 -63.85 -0.19 -4.93 16 12 C -0.03 -0.29 11.17 -16.44 -0.18 -0.48 16 13 C -0.03 -0.34 11.85 -17.82 -0.21 -0.55 16 14 N -0.48 -6.23 11.24 -14.47 -0.16 -6.39 16 15 C 0.20 2.34 11.89 -89.58 -1.07 1.27 16 16 C -0.13 -1.51 9.08 -38.82 -0.35 -1.86 16 17 C 0.09 1.64 4.59 -70.15 -0.32 1.32 16 18 C 0.15 3.56 6.99 -2.84 -0.02 3.54 16 19 N -0.60 -15.84 3.70 -177.90 -0.66 -16.49 16 20 C -0.22 -6.23 10.69 -15.06 -0.16 -6.39 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -27.54 11.29 55.49 0.63 -26.91 16 24 Si 0.91 22.52 29.56 -169.99 -5.02 17.50 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.11 2.37 8.27 -2.97 -0.02 2.35 16 29 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.45 7.13 -51.93 -0.37 0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.10 0.73 3.98 -51.98 -0.21 0.52 16 34 H 0.18 1.11 2.68 -52.49 -0.14 0.96 16 35 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.18 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.21 2.00 7.07 -52.49 -0.37 1.63 16 39 H 0.15 1.83 6.70 -52.48 -0.35 1.48 16 40 H 0.11 1.80 8.07 -51.93 -0.42 1.38 16 41 H 0.05 1.23 5.76 -51.93 -0.30 0.93 16 42 H 0.08 2.03 6.87 -51.93 -0.36 1.67 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 45 H 0.05 1.13 6.25 -51.93 -0.32 0.81 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -36.55 366.13 -10.20 -46.75 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.34 Total: 1.26 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -4.44 Total: 7.48 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -0.97 Total: -68.62 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.55 -10.20 -46.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957399562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.507 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds