Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46968 * 2 1 4 4 C 1.34772 * 119.99687 * 98.30625 * 3 2 1 5 5 O 1.21518 * 119.99671 * 186.35080 * 4 3 2 6 6 C 1.48156 * 120.00372 * 6.34647 * 4 3 2 7 7 C 1.39953 * 120.89161 * 331.13074 * 6 4 3 8 8 C 1.38042 * 119.13501 * 179.97438 * 7 6 4 9 9 N 1.31850 * 120.98328 * 359.97309 * 8 7 6 10 10 C 1.32224 * 121.97448 * 0.02562 * 9 8 7 11 11 N 1.39846 * 119.62669 * 180.02562 * 10 9 8 12 12 C 1.37172 * 126.48727 * 4.71161 * 11 10 9 13 13 C 1.34615 * 106.83073 * 179.87582 * 12 11 10 14 14 N 1.34155 * 108.21639 * 0.39287 * 13 12 11 15 15 C 1.30485 * 109.37115 * 359.74556 * 14 13 12 16 16 C 1.38906 * 120.74913 * 0.02562 * 10 9 8 17 17 C 1.46497 * 120.00260 * 278.30374 * 3 2 1 18 18 C 1.53945 * 113.74449 * 222.90735 * 17 3 2 19 19 N 1.47818 * 86.03319 * 222.08455 * 18 17 3 20 20 C 1.36943 * 134.45311 * 204.64036 * 19 18 17 21 21 H 1.07993 * 119.99621 * 184.81938 * 20 19 18 22 22 C 1.38810 * 119.99979 * 4.82208 * 20 19 18 23 23 N 1.31621 * 119.99794 * 5.06430 * 22 20 19 24 24 Si 1.86802 * 120.00034 * 185.05934 * 22 20 19 25 25 H 1.48498 * 109.46774 * 95.00126 * 24 22 20 26 26 H 1.48491 * 109.47137 * 214.99934 * 24 22 20 27 27 H 1.48500 * 109.46856 * 335.00604 * 24 22 20 28 28 C 1.47572 * 91.05212 * 24.54784 * 19 18 17 29 29 H 1.09011 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47173 * 299.99684 * 1 2 3 31 31 H 1.08999 * 109.47411 * 59.99909 * 1 2 3 32 32 H 1.09001 * 109.47173 * 240.00316 * 2 1 3 33 33 H 1.08994 * 109.47414 * 120.00575 * 2 1 3 34 34 H 1.07999 * 120.42685 * 359.97438 * 7 6 4 35 35 H 1.07997 * 119.50461 * 179.97438 * 8 7 6 36 36 H 1.07998 * 126.58492 * 0.02562 * 12 11 10 37 37 H 1.07998 * 125.89713 * 180.13699 * 13 12 11 38 38 H 1.07993 * 125.72161 * 179.97438 * 15 14 13 39 39 H 1.08007 * 120.53153 * 180.02562 * 16 10 9 40 40 H 1.09001 * 112.94358 * 354.49741 * 17 3 2 41 41 H 1.08998 * 113.76383 * 336.34371 * 18 17 3 42 42 H 1.08990 * 113.77337 * 107.74346 * 18 17 3 43 43 H 0.97006 * 119.99527 * 179.97438 * 23 22 20 44 44 H 1.09010 * 113.76976 * 221.15486 * 28 19 18 45 45 H 1.09000 * 113.77581 * 89.75707 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4018 1.9603 1.1550 5 8 2.6968 3.1390 1.1750 6 6 2.4637 1.1600 2.4002 7 6 1.6217 0.0581 2.5887 8 6 1.7104 -0.6624 3.7628 9 7 2.5735 -0.3271 4.7015 10 6 3.3883 0.7056 4.5668 11 7 4.2852 1.0170 5.5936 12 6 4.4921 0.2965 6.7423 13 6 5.4369 0.9478 7.4461 14 7 5.7947 2.0412 6.7560 15 6 5.1126 2.0942 5.6450 16 6 3.3636 1.4845 3.4170 17 6 2.0897 2.1330 -1.2554 18 6 3.3831 2.9525 -1.4144 19 7 2.5157 4.0273 -1.9412 20 6 2.7118 5.0964 -2.7741 21 1 1.9101 5.7982 -2.9497 22 6 3.9412 5.2779 -3.3926 23 7 4.8855 4.3709 -3.2587 24 14 4.2552 6.8094 -4.4152 25 1 4.9244 7.8359 -3.5764 26 1 5.1275 6.4654 -5.5666 27 1 2.9632 7.3441 -4.9152 28 6 1.3536 3.4843 -1.2114 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9118 -0.2247 1.8256 35 1 1.0632 -1.5136 3.9148 36 1 3.9945 -0.6190 7.0264 37 1 5.8350 0.6449 8.4033 38 1 5.1917 2.8649 4.8927 39 1 4.0310 2.3270 3.3105 40 1 1.8438 1.5275 -2.1278 41 1 3.8649 3.2007 -0.4687 42 1 4.0745 2.5437 -2.1511 43 1 5.7445 4.4977 -3.6913 44 1 0.4276 3.4991 -1.7863 45 1 1.2379 3.8890 -0.2059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957399562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = 159.173692 kcal Electronic energy + Delta-G solvation = -29405.161014 eV Core-core repulsion = 25427.443710 eV Total energy + Delta-G solvation = -3977.717304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45614 -42.17170 -40.76243 -38.63804 -37.23585 -35.28646 -34.34772 -33.63273 -31.82718 -31.07667 -30.29009 -29.42751 -26.60190 -26.56032 -25.45250 -24.75727 -24.17237 -22.63203 -22.23392 -21.68386 -20.68030 -19.19473 -18.80587 -17.99787 -17.81694 -17.62938 -17.05067 -16.87732 -16.50468 -16.22457 -16.03892 -15.60860 -15.23988 -15.04787 -14.96841 -14.88788 -14.62560 -14.37791 -14.21726 -14.08587 -13.76128 -13.43799 -12.99560 -12.86945 -12.81286 -12.70063 -12.48553 -12.24965 -12.01982 -11.87763 -11.66008 -11.54539 -11.37789 -11.27771 -11.13644 -10.88990 -10.53278 -9.90486 -9.63023 -9.53177 -8.89435 -7.91586 -5.26493 -0.63035 -0.37526 1.03997 1.25874 1.42059 1.45460 1.53900 1.67699 1.82497 2.01152 2.46488 2.58662 3.02899 3.21187 3.26462 3.45436 3.48297 3.59556 3.72350 3.74720 3.79949 3.99422 4.15313 4.21791 4.28809 4.35858 4.43542 4.49877 4.55335 4.58194 4.61605 4.79336 4.82513 4.88985 4.97608 5.01529 5.02990 5.21130 5.25116 5.28099 5.46705 5.48274 5.62860 5.80383 5.91500 5.97792 6.35105 6.54262 6.87359 6.88878 7.04302 7.58088 8.54610 9.23782 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.002939 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.069042 B = 9523.702891 C =11336.232029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 N -0.584 5.584 4 C 0.543 3.457 5 O -0.554 6.554 6 C -0.060 4.060 7 C -0.163 4.163 8 C 0.144 3.856 9 N -0.493 5.493 10 C 0.332 3.668 11 N -0.415 5.415 12 C -0.026 4.026 13 C -0.043 4.043 14 N -0.509 5.509 15 C 0.183 3.817 16 C -0.141 4.141 17 C 0.130 3.870 18 C 0.144 3.856 19 N -0.632 5.632 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.980 3.020 25 H -0.293 1.293 26 H -0.289 1.289 27 H -0.264 1.264 28 C 0.114 3.886 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.206 0.794 35 H 0.225 0.775 36 H 0.205 0.795 37 H 0.201 0.799 38 H 0.221 0.779 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.021 0.979 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.057 0.943 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -19.819 15.493 27.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.062 4.062 3 N -0.316 5.316 4 C 0.331 3.669 5 O -0.432 6.432 6 C -0.071 4.071 7 C -0.183 4.183 8 C -0.014 4.014 9 N -0.205 5.205 10 C 0.105 3.895 11 N -0.097 5.097 12 C -0.155 4.155 13 C -0.187 4.187 14 N -0.226 5.226 15 C -0.098 4.098 16 C -0.165 4.165 17 C 0.026 3.974 18 C 0.018 3.982 19 N -0.359 5.359 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.221 1.221 26 H -0.215 1.215 27 H -0.188 1.188 28 C -0.012 4.012 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.222 0.778 35 H 0.241 0.759 36 H 0.222 0.778 37 H 0.218 0.782 38 H 0.238 0.762 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.729 -18.947 16.243 26.786 hybrid contribution 0.310 1.507 -1.546 2.182 sum -9.419 -17.440 14.696 24.675 Atomic orbital electron populations 1.22318 0.93503 1.04836 1.02873 1.22900 0.96291 0.80495 1.06476 1.48003 1.62582 1.15331 1.05649 1.18594 0.77625 0.86648 0.83989 1.90875 1.49202 1.17440 1.85729 1.20137 0.97143 0.96380 0.93455 1.23751 1.00335 0.93220 1.00982 1.23474 0.92814 0.98916 0.86208 1.66948 1.05591 1.14386 1.33614 1.17959 0.91563 0.93254 0.86681 1.43230 1.29577 1.21161 1.15721 1.23319 1.03486 1.01615 0.87113 1.22916 0.99812 0.93378 1.02607 1.70354 1.25266 1.21888 1.05130 1.25714 0.92037 0.92755 0.99318 1.21563 1.01348 1.01187 0.92362 1.23452 0.97040 0.91098 0.85830 1.22634 0.93576 0.86786 0.95219 1.46015 1.07798 1.30907 1.51160 1.19388 0.98003 1.01335 1.17517 0.90116 1.25653 0.96227 1.01788 1.02356 1.70022 1.05136 1.35790 1.48904 0.85037 0.78001 0.78599 0.77568 1.22050 1.21538 1.18836 1.23008 0.91602 0.91475 0.95113 0.87249 0.91792 0.92424 0.88701 0.85974 0.77773 0.75912 0.77834 0.78249 0.76229 0.84355 0.85022 0.96132 0.93549 0.94298 0.92448 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.12 71.98 0.66 -1.04 16 2 C 0.06 0.83 5.59 86.38 0.48 1.32 16 3 N -0.58 -15.84 2.74 -806.59 -2.21 -18.05 16 4 C 0.54 17.09 6.92 86.88 0.60 17.69 16 5 O -0.55 -23.79 12.50 -3.77 -0.05 -23.84 16 6 C -0.06 -1.36 5.62 -19.90 -0.11 -1.48 16 7 C -0.16 -2.07 7.60 22.64 0.17 -1.90 16 8 C 0.14 1.48 11.17 84.64 0.95 2.42 16 9 N -0.49 -8.57 9.87 -192.96 -1.90 -10.48 16 10 C 0.33 7.31 7.50 132.77 1.00 8.30 16 11 N -0.41 -9.51 2.98 -355.92 -1.06 -10.58 16 12 C -0.03 -0.51 11.17 83.03 0.93 0.41 16 13 C -0.04 -0.90 11.85 83.51 0.99 0.09 16 14 N -0.51 -13.61 11.24 -199.68 -2.25 -15.86 16 15 C 0.18 4.54 11.89 179.98 2.14 6.68 16 16 C -0.14 -3.46 9.08 22.76 0.21 -3.25 16 17 C 0.13 4.70 4.59 46.75 0.21 4.92 16 18 C 0.14 7.27 6.99 86.44 0.60 7.87 16 19 N -0.63 -34.42 3.70 -716.75 -2.65 -37.07 16 20 C -0.23 -13.80 10.69 84.03 0.90 -12.91 16 21 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 23 N -0.95 -59.25 11.29 21.65 0.24 -59.00 16 24 Si 0.98 47.39 29.56 68.60 2.03 49.42 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.11 4.87 8.27 86.49 0.72 5.59 16 29 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.06 0.62 7.13 -2.39 -0.02 0.60 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 33 H 0.12 1.21 3.98 -2.44 -0.01 1.21 16 34 H 0.21 1.44 2.68 -2.91 -0.01 1.43 16 35 H 0.22 0.04 8.06 -2.91 -0.02 0.01 16 36 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.22 4.71 7.07 -2.91 -0.02 4.69 16 39 H 0.14 3.70 6.70 -2.91 -0.02 3.68 16 40 H 0.13 4.17 8.07 -2.39 -0.02 4.16 16 41 H 0.02 1.16 5.76 -2.39 -0.01 1.15 16 42 H 0.05 2.59 6.87 -2.39 -0.02 2.57 16 43 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 44 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.04 1.73 6.25 -2.39 -0.01 1.71 16 Total: -1.00 -86.17 366.13 4.10 -82.07 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.04 Total: 12.17 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 10.90 Total: 31.20 kcal Atomic # 7 Polarization: -141.21 SS G_CDS: -9.82 Total: -151.03 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -86.17 4.10 -82.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957399562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.246 kcal (2) G-P(sol) polarization free energy of solvation -86.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds