Wall clock time and date at job start Sat Apr 11 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47486 * 2 1 4 4 C 1.34772 * 120.00036 * 274.41444 * 3 2 1 5 5 O 1.21659 * 120.00058 * 184.23768 * 4 3 2 6 6 C 1.46923 * 119.99929 * 4.24122 * 4 3 2 7 7 N 1.37122 * 127.34742 * 103.36620 * 6 4 3 8 8 H 0.96995 * 125.90086 * 0.02800 * 7 6 4 9 9 N 1.28618 * 108.19358 * 179.85750 * 7 6 4 10 10 N 1.28458 * 111.22306 * 0.42529 * 9 7 6 11 11 C 1.34183 * 109.39572 * 359.73256 * 10 9 7 12 12 C 1.48201 * 127.05648 * 179.97438 * 11 10 9 13 13 C 1.39436 * 120.12869 * 134.82601 * 12 11 10 14 14 C 1.37993 * 119.86744 * 179.69779 * 13 12 11 15 15 C 1.38339 * 120.12550 * 0.57411 * 14 13 12 16 16 C 1.38337 * 120.26916 * 359.71941 * 15 14 13 17 17 C 1.37992 * 120.12845 * 359.97438 * 16 15 14 18 18 C 1.46506 * 119.99889 * 94.41080 * 3 2 1 19 19 C 1.53496 * 114.20543 * 112.28038 * 18 3 2 20 20 N 1.47068 * 87.98593 * 87.51666 * 19 18 3 21 21 C 1.36928 * 136.05601 * 207.08250 * 20 19 18 22 22 H 1.08003 * 120.00513 * 357.64682 * 21 20 19 23 23 C 1.38815 * 119.99761 * 177.64813 * 21 20 19 24 24 N 1.31626 * 119.99786 * 207.61971 * 23 21 20 25 25 Si 1.86802 * 120.00009 * 27.62546 * 23 21 20 26 26 H 1.48497 * 109.46868 * 265.23724 * 25 23 21 27 27 H 1.48494 * 109.47135 * 25.23765 * 25 23 21 28 28 H 1.48497 * 109.47024 * 145.24072 * 25 23 21 29 29 C 1.47069 * 87.88351 * 27.34410 * 20 19 18 30 30 H 1.09004 * 109.46998 * 299.99922 * 1 2 3 31 31 H 1.08994 * 109.46781 * 60.00113 * 1 2 3 32 32 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47261 * 239.99724 * 2 1 3 34 34 H 1.09007 * 109.46897 * 120.00180 * 2 1 3 35 35 H 1.08003 * 120.06457 * 359.97438 * 13 12 11 36 36 H 1.07999 * 119.93560 * 180.29822 * 14 13 12 37 37 H 1.08007 * 119.86477 * 179.74326 * 15 14 13 38 38 H 1.07998 * 119.93592 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.06725 * 180.02562 * 17 16 15 40 40 H 1.08995 * 113.28356 * 339.21274 * 18 3 2 41 41 H 1.09001 * 113.46627 * 332.73515 * 19 18 3 42 42 H 1.09001 * 113.46685 * 202.30172 * 19 18 3 43 43 H 0.96991 * 119.99925 * 5.02752 * 24 23 21 44 44 H 1.09004 * 113.46754 * 87.43623 * 29 20 19 45 45 H 1.08995 * 113.46504 * 217.87560 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.0464 -1.1637 5 8 2.6362 3.1652 -1.1711 6 6 1.7338 1.4206 -2.4233 7 7 0.5970 1.6864 -3.1425 8 1 -0.0858 2.3342 -2.9081 9 7 0.5944 0.9309 -4.1834 10 7 1.6333 0.1759 -4.2126 11 6 2.3969 0.4269 -3.1381 12 6 3.6819 -0.2213 -2.7846 13 6 4.7615 0.5513 -2.3582 14 6 5.9536 -0.0584 -2.0245 15 6 6.0824 -1.4322 -2.1236 16 6 5.0168 -2.2034 -2.5518 17 6 3.8178 -1.6056 -2.8823 18 6 2.3546 2.0392 1.2650 19 6 3.8508 2.3315 1.4442 20 7 3.6321 3.6076 0.7467 21 6 4.3891 4.4575 -0.0146 22 1 5.4345 4.2451 -0.1836 23 6 3.8129 5.5921 -0.5691 24 7 4.3006 6.1017 -1.6804 25 14 2.3456 6.3959 0.2619 26 1 1.0911 5.8866 -0.3481 27 1 2.3586 6.0718 1.7109 28 1 2.4207 7.8681 0.0832 29 6 2.2443 3.5725 1.2322 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.6635 1.6244 -2.2851 36 1 6.7889 0.5385 -1.6895 37 1 7.0187 -1.9046 -1.8652 38 1 5.1231 -3.2755 -2.6268 39 1 2.9863 -2.2087 -3.2161 40 1 1.8832 1.5746 2.1310 41 1 4.4960 1.6433 0.8981 42 1 4.1479 2.4515 2.4861 43 1 5.0147 5.6444 -2.1511 44 1 2.1179 4.0197 2.2182 45 1 1.5207 3.9416 0.5054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957429620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:35 Heat of formation + Delta-G solvation = 195.070568 kcal Electronic energy + Delta-G solvation = -31741.868840 eV Core-core repulsion = 27765.708142 eV Total energy + Delta-G solvation = -3976.160699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.10146 -40.15365 -38.88860 -36.93744 -35.41139 -33.71488 -32.31444 -32.05026 -30.83012 -30.13176 -29.46398 -27.60209 -25.23314 -24.82414 -23.55260 -23.13350 -22.86595 -22.11470 -21.35871 -20.29547 -19.03087 -17.71379 -17.29913 -16.98026 -16.56199 -16.27324 -15.52054 -15.40056 -14.69049 -14.58169 -14.48218 -14.38294 -13.86832 -13.62087 -13.51821 -13.34885 -13.23795 -13.18505 -12.75402 -12.44854 -12.13152 -11.85171 -11.67726 -11.32346 -11.25636 -11.21024 -11.17836 -10.98574 -10.79882 -10.59113 -10.51424 -10.12778 -9.63083 -9.55747 -9.32970 -9.07836 -8.85052 -8.41121 -8.30301 -8.04782 -6.83982 -6.12599 -2.87456 1.00173 1.49650 1.51699 2.32305 2.49618 3.05972 3.31864 3.52280 3.60462 3.72852 3.85647 4.25588 4.51004 4.82099 4.84369 4.89860 4.90248 5.00268 5.04813 5.08148 5.21092 5.25672 5.30322 5.37598 5.49295 5.51631 5.59915 5.67611 5.70018 5.72487 5.77263 6.00900 6.03441 6.05650 6.14944 6.22750 6.31512 6.45865 6.50818 6.53538 6.61866 6.65540 6.72951 7.03143 7.13359 7.32604 7.66712 8.38293 8.43744 8.65834 9.17480 9.79826 10.61807 11.38729 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.005429 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.104892 B = 5155.858641 C = 5585.746133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.584 5.584 4 C 0.544 3.456 5 O -0.387 6.387 6 C -0.010 4.010 7 N -0.368 5.368 8 H 0.453 0.547 9 N -0.070 5.070 10 N -0.252 5.252 11 C 0.048 3.952 12 C -0.013 4.013 13 C -0.082 4.082 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.127 4.127 17 C -0.091 4.091 18 C 0.103 3.897 19 C 0.103 3.897 20 N -0.593 5.593 21 C -0.279 4.279 22 H 0.074 0.926 23 C 0.003 3.997 24 N -0.922 5.922 25 Si 1.042 2.958 26 H -0.302 1.302 27 H -0.290 1.290 28 H -0.302 1.302 29 C 0.102 3.898 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.259 0.741 44 H 0.042 0.958 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 -17.996 3.779 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.320 5.320 4 C 0.323 3.677 5 O -0.249 6.249 6 C -0.148 4.148 7 N -0.091 5.091 8 H 0.299 0.701 9 N -0.050 5.050 10 N -0.119 5.119 11 C -0.091 4.091 12 C -0.015 4.015 13 C -0.101 4.101 14 C -0.132 4.132 15 C -0.131 4.131 16 C -0.145 4.145 17 C -0.110 4.110 18 C -0.002 4.002 19 C -0.025 4.025 20 N -0.320 5.320 21 C -0.404 4.404 22 H 0.092 0.908 23 C -0.197 4.197 24 N -0.564 5.564 25 Si 0.875 3.125 26 H -0.231 1.231 27 H -0.217 1.217 28 H -0.231 1.231 29 C -0.024 4.024 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.807 -16.300 2.187 17.799 hybrid contribution 0.971 -0.538 1.166 1.610 sum -5.836 -16.838 3.353 18.133 Atomic orbital electron populations 1.22221 0.96435 1.01942 1.02078 1.21516 0.93861 0.82945 1.03335 1.47196 1.66706 1.13259 1.04869 1.17067 0.82080 0.87275 0.81250 1.91572 1.34489 1.15182 1.83681 1.22897 0.90817 1.01537 0.99557 1.45254 1.17831 1.29722 1.16256 0.70053 1.78011 1.17830 1.03284 1.05897 1.75053 0.99840 1.18232 1.18726 1.20653 0.97344 0.97433 0.93655 1.17565 0.89533 0.92752 1.01679 1.21446 0.91929 1.00816 0.95931 1.21088 0.97606 0.94727 0.99798 1.21237 0.98683 0.93967 0.99182 1.21000 0.93075 0.99735 1.00671 1.21112 0.97938 0.93136 0.98806 1.22725 0.98106 0.95089 0.84253 1.22812 0.93801 0.90119 0.95818 1.45991 1.07135 1.22954 1.55907 1.19654 0.93116 1.04619 1.23035 0.90826 1.25144 1.01795 0.96426 0.96297 1.70859 1.28142 1.44495 1.12899 0.84053 0.76698 0.76061 0.75653 1.23108 1.21713 1.23060 1.22765 0.91015 0.91426 0.97235 0.91927 0.93467 0.91706 0.90673 0.90018 0.84943 0.85687 0.86114 0.85913 0.85769 0.88785 0.93719 0.94352 0.93100 0.94043 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.16 37.16 0.38 -1.27 16 2 C 0.11 1.22 5.90 -4.04 -0.02 1.20 16 3 N -0.58 -8.85 2.73 -167.18 -0.46 -9.31 16 4 C 0.54 9.98 6.06 -12.75 -0.08 9.91 16 5 O -0.39 -9.17 9.77 5.23 0.05 -9.11 16 6 C -0.01 -0.17 5.19 -81.62 -0.42 -0.59 16 7 N -0.37 -5.39 6.92 33.67 0.23 -5.16 16 8 H 0.45 5.32 8.96 -190.36 -1.71 3.61 16 9 N -0.07 -1.11 13.31 60.35 0.80 -0.31 16 10 N -0.25 -4.24 12.39 33.46 0.41 -3.83 16 11 C 0.05 0.78 5.82 -82.38 -0.48 0.30 16 12 C -0.01 -0.20 4.98 -104.91 -0.52 -0.72 16 13 C -0.08 -1.35 9.18 -39.23 -0.36 -1.71 16 14 C -0.11 -1.59 10.03 -39.63 -0.40 -1.99 16 15 C -0.11 -1.29 10.04 -39.51 -0.40 -1.68 16 16 C -0.13 -1.39 10.03 -39.64 -0.40 -1.79 16 17 C -0.09 -1.15 9.78 -39.23 -0.38 -1.54 16 18 C 0.10 1.63 4.84 -67.67 -0.33 1.30 16 19 C 0.10 1.90 8.38 -8.51 -0.07 1.83 16 20 N -0.59 -13.97 2.16 -184.61 -0.40 -14.36 16 21 C -0.28 -7.86 9.26 -15.06 -0.14 -8.00 16 22 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 23 C 0.00 0.10 4.49 -17.43 -0.08 0.02 16 24 N -0.92 -29.41 13.70 55.49 0.76 -28.65 16 25 Si 1.04 27.26 25.39 -169.99 -4.32 22.94 16 26 H -0.30 -7.73 6.95 56.52 0.39 -7.33 16 27 H -0.29 -7.09 6.25 56.52 0.35 -6.73 16 28 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 29 C 0.10 2.08 4.68 -8.37 -0.04 2.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.51 7.41 -51.93 -0.39 0.12 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.92 5.59 -51.93 -0.29 0.63 16 34 H 0.08 0.78 8.04 -51.92 -0.42 0.36 16 35 H 0.13 2.66 7.64 -52.48 -0.40 2.26 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 44 H 0.04 0.82 7.54 -51.93 -0.39 0.43 16 45 H 0.05 1.22 4.90 -51.93 -0.25 0.97 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -35.09 365.31 -8.43 -43.52 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.28 Total: 1.44 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.74 Total: -2.68 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 1.36 Total: -61.61 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.05 Total: -9.11 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.32 Total: 22.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.09 -8.43 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957429620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.592 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds