Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47486 * 2 1 4 4 C 1.34772 * 120.00036 * 274.41444 * 3 2 1 5 5 O 1.21659 * 120.00058 * 184.23768 * 4 3 2 6 6 C 1.46923 * 119.99929 * 4.24122 * 4 3 2 7 7 N 1.37122 * 127.34742 * 103.36620 * 6 4 3 8 8 H 0.96995 * 125.90086 * 0.02800 * 7 6 4 9 9 N 1.28618 * 108.19358 * 179.85750 * 7 6 4 10 10 N 1.28458 * 111.22306 * 0.42529 * 9 7 6 11 11 C 1.34183 * 109.39572 * 359.73256 * 10 9 7 12 12 C 1.48201 * 127.05648 * 179.97438 * 11 10 9 13 13 C 1.39436 * 120.12869 * 134.82601 * 12 11 10 14 14 C 1.37993 * 119.86744 * 179.69779 * 13 12 11 15 15 C 1.38339 * 120.12550 * 0.57411 * 14 13 12 16 16 C 1.38337 * 120.26916 * 359.71941 * 15 14 13 17 17 C 1.37992 * 120.12845 * 359.97438 * 16 15 14 18 18 C 1.46506 * 119.99889 * 94.41080 * 3 2 1 19 19 C 1.53496 * 114.20543 * 112.28038 * 18 3 2 20 20 N 1.47068 * 87.98593 * 87.51666 * 19 18 3 21 21 C 1.36928 * 136.05601 * 207.08250 * 20 19 18 22 22 H 1.08003 * 120.00513 * 357.64682 * 21 20 19 23 23 C 1.38815 * 119.99761 * 177.64813 * 21 20 19 24 24 N 1.31626 * 119.99786 * 207.61971 * 23 21 20 25 25 Si 1.86802 * 120.00009 * 27.62546 * 23 21 20 26 26 H 1.48497 * 109.46868 * 265.23724 * 25 23 21 27 27 H 1.48494 * 109.47135 * 25.23765 * 25 23 21 28 28 H 1.48497 * 109.47024 * 145.24072 * 25 23 21 29 29 C 1.47069 * 87.88351 * 27.34410 * 20 19 18 30 30 H 1.09004 * 109.46998 * 299.99922 * 1 2 3 31 31 H 1.08994 * 109.46781 * 60.00113 * 1 2 3 32 32 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47261 * 239.99724 * 2 1 3 34 34 H 1.09007 * 109.46897 * 120.00180 * 2 1 3 35 35 H 1.08003 * 120.06457 * 359.97438 * 13 12 11 36 36 H 1.07999 * 119.93560 * 180.29822 * 14 13 12 37 37 H 1.08007 * 119.86477 * 179.74326 * 15 14 13 38 38 H 1.07998 * 119.93592 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.06725 * 180.02562 * 17 16 15 40 40 H 1.08995 * 113.28356 * 339.21274 * 18 3 2 41 41 H 1.09001 * 113.46627 * 332.73515 * 19 18 3 42 42 H 1.09001 * 113.46685 * 202.30172 * 19 18 3 43 43 H 0.96991 * 119.99925 * 5.02752 * 24 23 21 44 44 H 1.09004 * 113.46754 * 87.43623 * 29 20 19 45 45 H 1.08995 * 113.46504 * 217.87560 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.0464 -1.1637 5 8 2.6362 3.1652 -1.1711 6 6 1.7338 1.4206 -2.4233 7 7 0.5970 1.6864 -3.1425 8 1 -0.0858 2.3342 -2.9081 9 7 0.5944 0.9309 -4.1834 10 7 1.6333 0.1759 -4.2126 11 6 2.3969 0.4269 -3.1381 12 6 3.6819 -0.2213 -2.7846 13 6 4.7615 0.5513 -2.3582 14 6 5.9536 -0.0584 -2.0245 15 6 6.0824 -1.4322 -2.1236 16 6 5.0168 -2.2034 -2.5518 17 6 3.8178 -1.6056 -2.8823 18 6 2.3546 2.0392 1.2650 19 6 3.8508 2.3315 1.4442 20 7 3.6321 3.6076 0.7467 21 6 4.3891 4.4575 -0.0146 22 1 5.4345 4.2451 -0.1836 23 6 3.8129 5.5921 -0.5691 24 7 4.3006 6.1017 -1.6804 25 14 2.3456 6.3959 0.2619 26 1 1.0911 5.8866 -0.3481 27 1 2.3586 6.0718 1.7109 28 1 2.4207 7.8681 0.0832 29 6 2.2443 3.5725 1.2322 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.6635 1.6244 -2.2851 36 1 6.7889 0.5385 -1.6895 37 1 7.0187 -1.9046 -1.8652 38 1 5.1231 -3.2755 -2.6268 39 1 2.9863 -2.2087 -3.2161 40 1 1.8832 1.5746 2.1310 41 1 4.4960 1.6433 0.8981 42 1 4.1479 2.4515 2.4861 43 1 5.0147 5.6444 -2.1511 44 1 2.1179 4.0197 2.2182 45 1 1.5207 3.9416 0.5054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957429620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 169.937167 kcal Electronic energy + Delta-G solvation = -31742.958706 eV Core-core repulsion = 27765.708142 eV Total energy + Delta-G solvation = -3977.250565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.37036 -41.59664 -39.95351 -38.51016 -36.69073 -34.94040 -34.31367 -33.37641 -31.88240 -31.27944 -30.67610 -29.34875 -26.80789 -26.21922 -24.74575 -24.41011 -24.10776 -23.26164 -22.67454 -21.75373 -20.48461 -19.37103 -18.89086 -18.23628 -17.72202 -17.51649 -16.96649 -16.53507 -16.25372 -16.03345 -15.86784 -15.63838 -15.43132 -15.23599 -14.76683 -14.66895 -14.50079 -14.34888 -13.84243 -13.63749 -13.36732 -13.20360 -12.99918 -12.78032 -12.64001 -12.55442 -12.36723 -12.24089 -12.19537 -11.99742 -11.95821 -11.75969 -11.51050 -11.24000 -10.88129 -10.63887 -10.31489 -9.91187 -9.55172 -9.52142 -8.77983 -8.43394 -5.05420 -0.17404 0.31343 0.44476 1.05914 1.25443 1.38620 1.50288 1.64140 1.70930 2.12878 2.70702 2.78060 3.07482 3.15385 3.32022 3.41727 3.63012 3.69043 3.96552 4.02229 4.05357 4.11096 4.23588 4.33330 4.39427 4.42188 4.48610 4.53146 4.59009 4.65391 4.72608 4.77141 4.86266 4.90575 4.94073 4.99970 5.09039 5.09853 5.28501 5.46152 5.50558 5.54263 5.57242 5.58413 5.82598 6.01170 6.17586 6.37253 6.90492 7.09866 7.29896 7.66528 8.56646 9.11457 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.005429 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.104892 B = 5155.858641 C = 5585.746133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.576 5.576 4 C 0.551 3.449 5 O -0.454 6.454 6 C -0.024 4.024 7 N -0.354 5.354 8 H 0.463 0.537 9 N -0.068 5.068 10 N -0.267 5.267 11 C 0.050 3.950 12 C -0.029 4.029 13 C -0.106 4.106 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.110 4.110 17 C -0.086 4.086 18 C 0.130 3.870 19 C 0.102 3.898 20 N -0.623 5.623 21 C -0.242 4.242 22 H 0.032 0.968 23 C -0.057 4.057 24 N -0.969 5.969 25 Si 1.086 2.914 26 H -0.299 1.299 27 H -0.259 1.259 28 H -0.316 1.316 29 C 0.094 3.906 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.141 0.859 40 H 0.157 0.843 41 H 0.032 0.968 42 H 0.068 0.932 43 H 0.237 0.763 44 H 0.063 0.937 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 -22.452 6.394 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.311 5.311 4 C 0.332 3.668 5 O -0.321 6.321 6 C -0.162 4.162 7 N -0.080 5.080 8 H 0.312 0.688 9 N -0.049 5.049 10 N -0.134 5.134 11 C -0.088 4.088 12 C -0.031 4.031 13 C -0.126 4.126 14 C -0.144 4.144 15 C -0.118 4.118 16 C -0.128 4.128 17 C -0.105 4.105 18 C 0.026 3.974 19 C -0.025 4.025 20 N -0.350 5.350 21 C -0.370 4.370 22 H 0.050 0.950 23 C -0.250 4.250 24 N -0.616 5.616 25 Si 0.916 3.084 26 H -0.227 1.227 27 H -0.183 1.183 28 H -0.246 1.246 29 C -0.032 4.032 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.466 -20.854 4.878 23.029 hybrid contribution 1.550 0.598 0.351 1.698 sum -6.916 -20.256 5.229 22.033 Atomic orbital electron populations 1.22179 0.94715 1.03371 1.01845 1.21813 0.95167 0.80425 1.04480 1.47348 1.65335 1.14608 1.03794 1.17257 0.80775 0.86416 0.82386 1.91541 1.37749 1.18048 1.84784 1.22734 0.91681 1.02160 0.99652 1.45243 1.17676 1.29476 1.15563 0.68751 1.77946 1.17754 1.03275 1.05876 1.75033 1.00315 1.19026 1.18992 1.20910 0.97530 0.97246 0.93159 1.17612 0.88582 0.93995 1.02877 1.21069 0.94083 0.98299 0.99140 1.21156 0.96493 0.96411 1.00349 1.21590 1.00344 0.92390 0.97429 1.21469 0.91594 1.01679 0.98051 1.21351 0.99372 0.91717 0.98073 1.22647 0.96002 0.92725 0.86046 1.23077 0.95920 0.87266 0.96261 1.45876 1.08721 1.23780 1.56665 1.19328 0.91522 1.04107 1.22011 0.95036 1.26140 1.04210 0.98187 0.96467 1.70976 1.29693 1.45711 1.15211 0.83467 0.74211 0.74189 0.76543 1.22723 1.18323 1.24574 1.22995 0.88205 0.94973 0.97034 0.90835 0.95059 0.89433 0.91590 0.86818 0.90375 0.86187 0.82651 0.81699 0.84097 0.82573 0.94960 0.91492 0.95407 0.92009 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.16 71.98 0.73 -1.81 16 2 C 0.10 1.98 5.90 86.38 0.51 2.49 16 3 N -0.58 -16.33 2.73 -801.06 -2.19 -18.52 16 4 C 0.55 20.59 6.06 86.52 0.52 21.12 16 5 O -0.45 -22.61 9.77 -4.22 -0.04 -22.65 16 6 C -0.02 -0.82 5.19 40.83 0.21 -0.61 16 7 N -0.35 -10.53 6.92 -47.40 -0.33 -10.86 16 8 H 0.46 11.07 8.96 -219.93 -1.97 9.10 16 9 N -0.07 -2.16 13.31 37.02 0.49 -1.67 16 10 N -0.27 -9.00 12.39 -48.05 -0.60 -9.59 16 11 C 0.05 1.67 5.82 41.67 0.24 1.92 16 12 C -0.03 -0.88 4.98 -20.05 -0.10 -0.98 16 13 C -0.11 -3.71 9.18 22.50 0.21 -3.51 16 14 C -0.13 -3.55 10.03 22.24 0.22 -3.33 16 15 C -0.10 -1.98 10.04 22.32 0.22 -1.76 16 16 C -0.11 -1.95 10.03 22.23 0.22 -1.73 16 17 C -0.09 -1.97 9.78 22.50 0.22 -1.75 16 18 C 0.13 3.65 4.84 45.55 0.22 3.87 16 19 C 0.10 3.57 8.38 83.18 0.70 4.27 16 20 N -0.62 -29.55 2.16 -737.98 -1.59 -31.14 16 21 C -0.24 -14.42 9.26 84.04 0.78 -13.64 16 22 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 23 C -0.06 -3.59 4.49 84.86 0.38 -3.21 16 24 N -0.97 -66.50 13.70 21.65 0.30 -66.20 16 25 Si 1.09 57.08 25.39 68.60 1.74 58.82 16 26 H -0.30 -15.28 6.95 99.48 0.69 -14.59 16 27 H -0.26 -11.98 6.25 99.48 0.62 -11.35 16 28 H -0.32 -17.12 7.11 99.48 0.71 -16.41 16 29 C 0.09 3.62 4.68 83.27 0.39 4.01 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.03 0.59 7.41 -2.39 -0.02 0.57 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.45 5.59 -2.39 -0.01 1.43 16 34 H 0.11 1.52 8.04 -2.38 -0.02 1.50 16 35 H 0.08 3.55 7.64 -2.91 -0.02 3.53 16 36 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.16 2.65 8.12 -2.39 -0.02 2.63 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.24 16.66 8.73 -92.71 -0.81 15.85 16 44 H 0.06 2.19 7.54 -2.39 -0.02 2.17 16 45 H 0.03 1.46 4.90 -2.39 -0.01 1.45 16 Total: -1.00 -86.00 365.31 2.39 -83.61 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -1.08 Total: 12.85 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.68 Total: 5.36 kcal Atomic # 7 Polarization: -134.06 SS G_CDS: -3.92 Total: -137.98 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 57.08 SS G_CDS: 1.74 Total: 58.82 kcal Total: -86.00 2.39 -83.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957429620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.543 kcal (2) G-P(sol) polarization free energy of solvation -85.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds