Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47319 * 2 1 4 4 C 1.34778 * 120.00198 * 249.87489 * 3 2 1 5 5 O 1.21551 * 120.00262 * 183.63280 * 4 3 2 6 6 C 1.47858 * 119.99831 * 3.62898 * 4 3 2 7 7 C 1.39620 * 120.11112 * 29.52826 * 6 4 3 8 8 C 1.37976 * 119.98439 * 179.97438 * 7 6 4 9 9 C 1.38257 * 120.21726 * 359.97438 * 8 7 6 10 10 C 1.38908 * 120.23020 * 0.02562 * 9 8 7 11 11 N 1.40269 * 119.99943 * 179.97438 * 10 9 8 12 12 C 1.36113 * 125.93843 * 4.71159 * 11 10 9 13 13 C 1.35375 * 106.05096 * 179.84626 * 12 11 10 14 14 N 1.33781 * 106.53483 * 0.41511 * 13 12 11 15 15 N 1.28602 * 109.05863 * 359.73125 * 14 13 12 16 16 C 1.38586 * 120.00694 * 359.69892 * 10 9 8 17 17 C 1.46506 * 120.00034 * 69.59751 * 3 2 1 18 18 C 1.53941 * 113.74008 * 223.16691 * 17 3 2 19 19 N 1.47816 * 86.03636 * 222.08562 * 18 17 3 20 20 C 1.36936 * 134.45503 * 204.64660 * 19 18 17 21 21 H 1.08004 * 119.99788 * 179.86641 * 20 19 18 22 22 C 1.38813 * 120.00442 * 359.86693 * 20 19 18 23 23 N 1.31624 * 119.99618 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00262 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46888 * 60.00015 * 24 22 20 26 26 H 1.48500 * 109.47063 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47146 * 300.00159 * 24 22 20 28 28 C 1.47584 * 91.04957 * 24.55400 * 19 18 17 29 29 H 1.09001 * 109.46859 * 60.00184 * 1 2 3 30 30 H 1.08993 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47158 * 300.00798 * 1 2 3 32 32 H 1.08996 * 109.47711 * 239.99686 * 2 1 3 33 33 H 1.09001 * 109.46859 * 119.99816 * 2 1 3 34 34 H 1.08001 * 120.01180 * 359.97438 * 7 6 4 35 35 H 1.07997 * 119.89242 * 179.97438 * 8 7 6 36 36 H 1.07998 * 119.88822 * 179.97438 * 9 8 7 37 37 H 1.08004 * 126.97591 * 0.02562 * 12 11 10 38 38 H 1.08001 * 126.73369 * 180.14316 * 13 12 11 39 39 H 1.08003 * 120.10625 * 180.27660 * 16 10 9 40 40 H 1.08993 * 112.94209 * 354.76554 * 17 3 2 41 41 H 1.08995 * 113.77413 * 336.34847 * 18 17 3 42 42 H 1.09003 * 113.76538 * 107.74877 * 18 17 3 43 43 H 0.96993 * 119.99685 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.76497 * 221.15162 * 28 19 18 45 45 H 1.08992 * 113.77084 * 89.75589 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6216 1.8827 -1.0959 5 8 3.0856 3.0060 -1.0740 6 6 2.7191 1.0664 -2.3249 7 6 1.7411 0.1122 -2.6114 8 6 1.8343 -0.6477 -3.7593 9 6 2.8940 -0.4675 -4.6289 10 6 3.8721 0.4794 -4.3527 11 7 4.9454 0.6578 -5.2380 12 6 5.1012 0.0380 -6.4397 13 6 6.2638 0.5040 -6.9533 14 7 6.7595 1.3628 -6.0553 15 7 5.9571 1.4319 -5.0527 16 6 3.7847 1.2517 -3.2053 17 6 1.8455 2.2193 1.1892 18 6 1.3862 3.6545 0.8745 19 7 2.3626 4.0819 1.8986 20 6 2.4830 5.1780 2.7106 21 1 3.3142 5.2536 3.3960 22 6 1.5367 6.1920 2.6527 23 7 0.5234 6.0996 1.8177 24 14 1.7005 7.6869 3.7609 25 1 2.9839 8.3770 3.4745 26 1 0.5713 8.6173 3.5071 27 1 1.6771 7.2549 5.1814 28 6 3.1538 2.8527 1.6964 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.9116 -0.0312 -1.9347 35 1 1.0772 -1.3857 -3.9792 36 1 2.9620 -1.0655 -5.5256 37 1 4.4315 -0.6779 -6.8931 38 1 6.7067 0.2321 -7.9001 39 1 4.5419 1.9915 -2.9912 40 1 1.2617 1.7329 1.9705 41 1 1.6348 3.9842 -0.1342 42 1 0.3490 3.8529 1.1447 43 1 -0.1376 6.8083 1.7770 44 1 3.5253 2.4122 2.6216 45 1 3.9228 2.9463 0.9296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957461494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 199.870494 kcal Electronic energy + Delta-G solvation = -29366.437455 eV Core-core repulsion = 25390.484897 eV Total energy + Delta-G solvation = -3975.952558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.70707 -40.84428 -39.11573 -36.84720 -35.98035 -34.64163 -32.20419 -31.90436 -31.08523 -30.46418 -30.09169 -27.42595 -24.89810 -24.73176 -24.67895 -23.36156 -23.25565 -22.00918 -21.68553 -20.39480 -19.45212 -17.89689 -17.21907 -16.80045 -16.75616 -16.48611 -15.96043 -15.44498 -15.23839 -15.02373 -14.69030 -14.44400 -14.19357 -13.95905 -13.93983 -13.66234 -13.37082 -12.86973 -12.46624 -12.40083 -12.24236 -11.95320 -11.71519 -11.68118 -11.54539 -11.35710 -11.28714 -11.25315 -10.93289 -10.79444 -10.61434 -10.11528 -9.96439 -9.78877 -9.52494 -9.42583 -9.36896 -8.92751 -8.60646 -8.16929 -6.73263 -5.67008 -2.97645 0.15217 0.62213 1.57883 1.89451 2.25998 2.78292 3.09713 3.45987 3.47620 3.50233 3.51485 3.96834 4.11114 4.30231 4.48504 4.55694 4.57487 4.61963 4.77047 4.85894 4.86924 4.94033 5.04952 5.18164 5.27446 5.34836 5.43344 5.55337 5.59264 5.62856 5.68946 5.73681 5.77837 5.81427 5.87259 5.90350 6.10039 6.14885 6.37122 6.48055 6.59506 6.62720 6.95940 7.34359 7.58231 7.63641 7.71988 8.07082 8.15673 8.43244 9.14322 9.80439 10.71069 11.50400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002792 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.832336 B =10025.490634 C =11431.386987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 N -0.593 5.593 4 C 0.547 3.453 5 O -0.496 6.496 6 C -0.099 4.099 7 C -0.100 4.100 8 C -0.107 4.107 9 C -0.101 4.101 10 C 0.110 3.890 11 N -0.240 5.240 12 C -0.052 4.052 13 C -0.045 4.045 14 N -0.264 5.264 15 N -0.071 5.071 16 C -0.046 4.046 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.603 5.603 20 C -0.217 4.217 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.111 3.889 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.194 0.806 38 H 0.195 0.805 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.037 0.963 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -23.301 -15.767 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.047 4.047 3 N -0.326 5.326 4 C 0.333 3.667 5 O -0.371 6.371 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.126 4.126 9 C -0.122 4.122 10 C 0.019 3.981 11 N -0.027 5.027 12 C -0.200 4.200 13 C -0.201 4.201 14 N -0.130 5.130 15 N -0.050 5.050 16 C -0.067 4.067 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.329 5.329 20 C -0.345 4.345 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.016 4.016 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.211 0.789 38 H 0.212 0.788 39 H 0.172 0.828 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.851 -21.325 -14.676 25.901 hybrid contribution -0.518 -0.023 -0.324 0.611 sum 0.334 -21.347 -15.001 26.093 Atomic orbital electron populations 1.22281 0.95571 1.02229 1.03548 1.22258 0.94826 0.83736 1.03900 1.48013 1.57700 1.12711 1.14165 1.18082 0.79514 0.86509 0.82597 1.90917 1.45150 1.18294 1.82731 1.20074 0.95922 0.97868 0.96476 1.22345 0.99204 0.93255 0.97010 1.20996 0.97687 1.00371 0.93507 1.21020 0.93444 0.96875 1.00815 1.17489 0.88154 1.00749 0.91737 1.44784 1.15863 1.28239 1.13842 1.23826 1.02606 1.05044 0.88516 1.23686 0.95064 0.99218 1.02137 1.75176 1.21702 1.17069 0.99020 1.78507 0.93686 1.12576 1.20216 1.21053 0.98150 0.96989 0.90478 1.24126 0.99898 0.91736 0.85531 1.22723 0.95677 0.84934 0.93598 1.45667 1.25837 1.19431 1.41984 1.18946 1.07606 0.95216 1.12689 0.90349 1.24774 0.97654 0.98519 0.99601 1.69818 1.14077 1.33903 1.39039 0.86196 0.77011 0.82593 0.79948 1.21215 1.21614 1.21154 1.22934 0.94041 0.87570 0.97057 0.91873 0.91399 0.91064 0.88556 0.90793 0.82151 0.83848 0.84514 0.78916 0.78801 0.82836 0.87637 0.92826 0.91479 0.93732 0.94448 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.18 37.16 0.34 -1.16 16 2 C 0.08 0.74 5.61 -4.04 -0.02 0.72 16 3 N -0.59 -8.95 2.80 -169.01 -0.47 -9.42 16 4 C 0.55 9.22 6.88 -12.32 -0.08 9.13 16 5 O -0.50 -10.96 12.40 5.32 0.07 -10.89 16 6 C -0.10 -1.27 5.47 -104.99 -0.57 -1.84 16 7 C -0.10 -0.87 7.39 -39.16 -0.29 -1.16 16 8 C -0.11 -0.66 10.02 -39.67 -0.40 -1.06 16 9 C -0.10 -0.69 9.45 -39.33 -0.37 -1.07 16 10 C 0.11 1.17 6.66 -83.62 -0.56 0.61 16 11 N -0.24 -2.75 3.56 -10.50 -0.04 -2.79 16 12 C -0.05 -0.41 10.91 -16.67 -0.18 -0.59 16 13 C -0.05 -0.41 12.05 -17.72 -0.21 -0.62 16 14 N -0.26 -3.60 12.39 30.24 0.37 -3.23 16 15 N -0.07 -1.05 12.42 60.35 0.75 -0.30 16 16 C -0.05 -0.61 9.16 -39.00 -0.36 -0.96 16 17 C 0.09 1.71 4.26 -70.14 -0.30 1.42 16 18 C 0.16 3.91 6.78 -2.84 -0.02 3.89 16 19 N -0.60 -16.48 3.70 -177.88 -0.66 -17.14 16 20 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 21 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -28.43 11.39 55.49 0.63 -27.80 16 24 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.11 2.48 8.27 -2.96 -0.02 2.45 16 29 H 0.06 0.54 6.91 -51.93 -0.36 0.19 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 32 H 0.10 0.76 4.03 -51.93 -0.21 0.55 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.16 1.18 3.21 -52.49 -0.17 1.01 16 35 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.14 0.48 6.77 -52.49 -0.36 0.13 16 37 H 0.19 0.60 7.12 -52.48 -0.37 0.22 16 38 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.15 2.38 7.55 -52.48 -0.40 1.98 16 40 H 0.11 1.83 7.74 -51.93 -0.40 1.42 16 41 H 0.05 1.47 5.67 -51.93 -0.29 1.18 16 42 H 0.07 1.81 7.16 -51.93 -0.37 1.43 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.17 6.33 -51.93 -0.33 0.84 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -38.65 364.69 -7.50 -46.15 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.32 Total: -0.93 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -3.31 Total: 2.82 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.59 Total: -60.68 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.65 -7.50 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957461494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.025 kcal (2) G-P(sol) polarization free energy of solvation -38.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds