Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47319 * 2 1 4 4 C 1.34778 * 120.00198 * 249.87489 * 3 2 1 5 5 O 1.21551 * 120.00262 * 183.63280 * 4 3 2 6 6 C 1.47858 * 119.99831 * 3.62898 * 4 3 2 7 7 C 1.39620 * 120.11112 * 29.52826 * 6 4 3 8 8 C 1.37976 * 119.98439 * 179.97438 * 7 6 4 9 9 C 1.38257 * 120.21726 * 359.97438 * 8 7 6 10 10 C 1.38908 * 120.23020 * 0.02562 * 9 8 7 11 11 N 1.40269 * 119.99943 * 179.97438 * 10 9 8 12 12 C 1.36113 * 125.93843 * 4.71159 * 11 10 9 13 13 C 1.35375 * 106.05096 * 179.84626 * 12 11 10 14 14 N 1.33781 * 106.53483 * 0.41511 * 13 12 11 15 15 N 1.28602 * 109.05863 * 359.73125 * 14 13 12 16 16 C 1.38586 * 120.00694 * 359.69892 * 10 9 8 17 17 C 1.46506 * 120.00034 * 69.59751 * 3 2 1 18 18 C 1.53941 * 113.74008 * 223.16691 * 17 3 2 19 19 N 1.47816 * 86.03636 * 222.08562 * 18 17 3 20 20 C 1.36936 * 134.45503 * 204.64660 * 19 18 17 21 21 H 1.08004 * 119.99788 * 179.86641 * 20 19 18 22 22 C 1.38813 * 120.00442 * 359.86693 * 20 19 18 23 23 N 1.31624 * 119.99618 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00262 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46888 * 60.00015 * 24 22 20 26 26 H 1.48500 * 109.47063 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47146 * 300.00159 * 24 22 20 28 28 C 1.47584 * 91.04957 * 24.55400 * 19 18 17 29 29 H 1.09001 * 109.46859 * 60.00184 * 1 2 3 30 30 H 1.08993 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47158 * 300.00798 * 1 2 3 32 32 H 1.08996 * 109.47711 * 239.99686 * 2 1 3 33 33 H 1.09001 * 109.46859 * 119.99816 * 2 1 3 34 34 H 1.08001 * 120.01180 * 359.97438 * 7 6 4 35 35 H 1.07997 * 119.89242 * 179.97438 * 8 7 6 36 36 H 1.07998 * 119.88822 * 179.97438 * 9 8 7 37 37 H 1.08004 * 126.97591 * 0.02562 * 12 11 10 38 38 H 1.08001 * 126.73369 * 180.14316 * 13 12 11 39 39 H 1.08003 * 120.10625 * 180.27660 * 16 10 9 40 40 H 1.08993 * 112.94209 * 354.76554 * 17 3 2 41 41 H 1.08995 * 113.77413 * 336.34847 * 18 17 3 42 42 H 1.09003 * 113.76538 * 107.74877 * 18 17 3 43 43 H 0.96993 * 119.99685 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.76497 * 221.15162 * 28 19 18 45 45 H 1.08992 * 113.77084 * 89.75589 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6216 1.8827 -1.0959 5 8 3.0856 3.0060 -1.0740 6 6 2.7191 1.0664 -2.3249 7 6 1.7411 0.1122 -2.6114 8 6 1.8343 -0.6477 -3.7593 9 6 2.8940 -0.4675 -4.6289 10 6 3.8721 0.4794 -4.3527 11 7 4.9454 0.6578 -5.2380 12 6 5.1012 0.0380 -6.4397 13 6 6.2638 0.5040 -6.9533 14 7 6.7595 1.3628 -6.0553 15 7 5.9571 1.4319 -5.0527 16 6 3.7847 1.2517 -3.2053 17 6 1.8455 2.2193 1.1892 18 6 1.3862 3.6545 0.8745 19 7 2.3626 4.0819 1.8986 20 6 2.4830 5.1780 2.7106 21 1 3.3142 5.2536 3.3960 22 6 1.5367 6.1920 2.6527 23 7 0.5234 6.0996 1.8177 24 14 1.7005 7.6869 3.7609 25 1 2.9839 8.3770 3.4745 26 1 0.5713 8.6173 3.5071 27 1 1.6771 7.2549 5.1814 28 6 3.1538 2.8527 1.6964 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.9116 -0.0312 -1.9347 35 1 1.0772 -1.3857 -3.9792 36 1 2.9620 -1.0655 -5.5256 37 1 4.4315 -0.6779 -6.8931 38 1 6.7067 0.2321 -7.9001 39 1 4.5419 1.9915 -2.9912 40 1 1.2617 1.7329 1.9705 41 1 1.6348 3.9842 -0.1342 42 1 0.3490 3.8529 1.1447 43 1 -0.1376 6.8083 1.7770 44 1 3.5253 2.4122 2.6216 45 1 3.9228 2.9463 0.9296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957461494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 171.533959 kcal Electronic energy + Delta-G solvation = -29367.666220 eV Core-core repulsion = 25390.484897 eV Total energy + Delta-G solvation = -3977.181323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.47745 -42.01344 -40.20463 -38.48942 -37.12693 -35.55159 -34.19203 -32.77080 -31.85929 -31.59288 -30.90189 -29.35429 -26.62947 -26.17200 -25.49205 -24.74728 -24.10672 -22.99835 -22.49427 -21.85176 -20.55761 -19.01039 -18.78440 -17.95955 -17.75556 -17.56183 -17.13212 -16.86201 -16.50500 -16.11192 -15.90366 -15.72693 -15.27240 -15.13023 -14.95331 -14.65041 -14.45358 -14.08466 -14.00028 -13.75749 -13.39971 -13.08405 -13.00505 -12.87106 -12.73284 -12.63345 -12.47766 -12.41020 -12.35306 -12.03244 -11.98342 -11.95297 -11.69239 -11.50592 -11.04767 -10.59405 -10.51151 -10.22891 -9.70158 -9.56514 -8.92205 -7.93445 -5.27185 -0.56240 -0.19333 0.88158 1.19841 1.40001 1.45867 1.51525 1.52254 1.72530 1.88945 2.46274 2.58062 3.21689 3.26925 3.42440 3.47607 3.64758 3.72518 3.79667 3.88853 3.99347 4.11055 4.17659 4.20269 4.24211 4.28478 4.38639 4.54201 4.59524 4.60360 4.71994 4.81609 4.89751 4.97911 5.01262 5.03408 5.08679 5.15020 5.20073 5.24550 5.27157 5.44977 5.45993 5.48887 5.78666 5.83210 5.89063 6.43135 6.87936 7.15662 7.36795 7.56264 8.53882 9.23747 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002792 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.832336 B =10025.490634 C =11431.386987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 N -0.589 5.589 4 C 0.538 3.462 5 O -0.568 6.568 6 C -0.121 4.121 7 C -0.091 4.091 8 C -0.082 4.082 9 C -0.074 4.074 10 C 0.095 3.905 11 N -0.246 5.246 12 C -0.028 4.028 13 C -0.055 4.055 14 N -0.306 5.306 15 N -0.140 5.140 16 C -0.075 4.075 17 C 0.131 3.869 18 C 0.156 3.844 19 N -0.633 5.633 20 C -0.239 4.239 21 H 0.082 0.918 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.985 3.015 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.267 1.267 28 C 0.109 3.891 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.188 0.812 37 H 0.253 0.747 38 H 0.232 0.768 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.020 0.980 42 H 0.040 0.960 43 H 0.249 0.751 44 H 0.059 0.941 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 -28.364 -17.548 33.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.052 4.052 3 N -0.321 5.321 4 C 0.328 3.672 5 O -0.447 6.447 6 C -0.125 4.125 7 C -0.109 4.109 8 C -0.100 4.100 9 C -0.095 4.095 10 C 0.004 3.996 11 N -0.034 5.034 12 C -0.176 4.176 13 C -0.212 4.212 14 N -0.171 5.171 15 N -0.117 5.117 16 C -0.096 4.096 17 C 0.026 3.974 18 C 0.030 3.970 19 N -0.359 5.359 20 C -0.367 4.367 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.812 3.188 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.193 1.193 28 C -0.018 4.018 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.196 0.804 35 H 0.217 0.783 36 H 0.206 0.794 37 H 0.269 0.731 38 H 0.248 0.752 39 H 0.124 0.876 40 H 0.152 0.848 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.247 -26.456 -16.437 31.171 hybrid contribution 0.162 1.415 0.055 1.426 sum -1.085 -25.041 -16.382 29.943 Atomic orbital electron populations 1.22286 0.93966 1.04562 1.02511 1.22710 0.96027 0.80304 1.06144 1.48002 1.57252 1.14488 1.12318 1.18892 0.78060 0.86087 0.84173 1.90876 1.48139 1.21598 1.84133 1.19679 0.98027 0.99812 0.94952 1.22560 0.97888 0.91891 0.98552 1.21624 0.97810 0.99468 0.91099 1.21654 0.91175 0.94592 1.02054 1.17764 0.89184 1.01645 0.90984 1.44987 1.15345 1.28005 1.15013 1.24788 1.02464 1.03935 0.86422 1.24478 0.95671 0.98205 1.02797 1.75096 1.22851 1.18964 1.00155 1.78512 0.95752 1.15686 1.21791 1.20772 0.98129 0.97853 0.92858 1.23369 0.96957 0.89891 0.87162 1.22496 0.93781 0.89308 0.91390 1.46118 1.27509 1.20260 1.42049 1.19397 1.07704 0.96509 1.13101 0.90065 1.25721 0.97419 1.01610 1.01432 1.70036 1.14800 1.34573 1.40792 0.85069 0.76671 0.78441 0.78631 1.21002 1.21610 1.19286 1.23002 0.94887 0.86431 0.97443 0.92080 0.87243 0.93087 0.85933 0.89057 0.80437 0.78265 0.79447 0.73129 0.75161 0.87585 0.84842 0.96224 0.94127 0.94236 0.92329 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.18 71.98 0.66 -1.69 16 2 C 0.07 1.15 5.61 86.38 0.48 1.63 16 3 N -0.59 -18.07 2.80 -806.90 -2.26 -20.33 16 4 C 0.54 19.55 6.88 86.79 0.60 20.15 16 5 O -0.57 -28.20 12.40 -3.88 -0.05 -28.24 16 6 C -0.12 -3.15 5.47 -20.10 -0.11 -3.26 16 7 C -0.09 -1.25 7.39 22.54 0.17 -1.09 16 8 C -0.08 -0.47 10.02 22.21 0.22 -0.25 16 9 C -0.07 -0.60 9.45 22.43 0.21 -0.39 16 10 C 0.09 1.90 6.66 38.03 0.25 2.15 16 11 N -0.25 -5.48 3.56 -187.14 -0.67 -6.15 16 12 C -0.03 -0.34 10.91 83.37 0.91 0.57 16 13 C -0.05 -0.90 12.05 83.73 1.01 0.11 16 14 N -0.31 -8.74 12.39 -58.24 -0.72 -9.47 16 15 N -0.14 -4.43 12.42 37.02 0.46 -3.97 16 16 C -0.07 -2.14 9.16 22.65 0.21 -1.93 16 17 C 0.13 5.14 4.26 46.75 0.20 5.34 16 18 C 0.16 8.38 6.78 86.44 0.59 8.96 16 19 N -0.63 -36.62 3.70 -716.69 -2.65 -39.27 16 20 C -0.24 -14.76 10.70 84.03 0.90 -13.86 16 21 H 0.08 4.80 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.95 -61.77 11.39 21.65 0.25 -61.52 16 24 Si 0.98 48.95 29.55 68.60 2.03 50.98 16 25 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.11 5.11 8.27 86.49 0.72 5.83 16 29 H 0.06 0.86 6.91 -2.39 -0.02 0.84 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.92 7.65 -2.39 -0.02 0.90 16 32 H 0.12 1.46 4.03 -2.39 -0.01 1.45 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.18 1.81 3.21 -2.91 -0.01 1.80 16 35 H 0.20 -0.85 8.06 -2.91 -0.02 -0.88 16 36 H 0.19 -0.36 6.77 -2.91 -0.02 -0.37 16 37 H 0.25 -0.30 7.12 -2.91 -0.02 -0.32 16 38 H 0.23 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.11 3.95 7.55 -2.91 -0.02 3.93 16 40 H 0.13 4.54 7.74 -2.39 -0.02 4.52 16 41 H 0.02 1.20 5.67 -2.39 -0.01 1.19 16 42 H 0.04 2.34 7.16 -2.39 -0.02 2.33 16 43 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.03 1.44 6.33 -2.39 -0.02 1.43 16 Total: -1.00 -100.64 364.69 4.90 -95.74 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.04 Total: 3.73 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.48 Total: 18.51 kcal Atomic # 7 Polarization: -135.11 SS G_CDS: -5.60 Total: -140.71 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -100.64 4.90 -95.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957461494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 267.274 kcal (2) G-P(sol) polarization free energy of solvation -100.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds