Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47285 * 2 1 4 4 C 1.34775 * 120.00314 * 84.71553 * 3 2 1 5 5 O 1.21576 * 120.00429 * 185.47104 * 4 3 2 6 6 C 1.47627 * 119.99545 * 5.47483 * 4 3 2 7 7 C 1.39630 * 120.18828 * 56.93894 * 6 4 3 8 8 C 1.37859 * 119.91374 * 179.67546 * 7 6 4 9 9 C 1.38502 * 120.30220 * 0.61868 * 8 7 6 10 10 C 1.38103 * 120.38535 * 359.67999 * 9 8 7 11 11 C 1.38723 * 120.07719 * 359.97438 * 10 9 8 12 12 N 1.39802 * 120.15470 * 180.02562 * 11 10 9 13 13 C 1.36333 * 126.86653 * 6.00229 * 12 11 10 14 14 C 1.34960 * 106.77600 * 179.90719 * 13 12 11 15 15 N 1.33377 * 109.01809 * 0.37554 * 14 13 12 16 16 N 1.28769 * 109.92958 * 359.76329 * 15 14 13 17 17 C 1.46502 * 119.99947 * 264.72087 * 3 2 1 18 18 C 1.53939 * 113.74430 * 222.50649 * 17 3 2 19 19 N 1.47808 * 86.04061 * 222.08678 * 18 17 3 20 20 C 1.36938 * 134.45921 * 204.64761 * 19 18 17 21 21 H 1.08002 * 120.00530 * 179.86417 * 20 19 18 22 22 C 1.38814 * 119.99623 * 359.86116 * 20 19 18 23 23 N 1.31616 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99665 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47150 * 90.00431 * 24 22 20 26 26 H 1.48504 * 109.47193 * 209.99879 * 24 22 20 27 27 H 1.48495 * 109.47271 * 330.00053 * 24 22 20 28 28 C 1.47575 * 91.05303 * 24.54757 * 19 18 17 29 29 H 1.08991 * 109.47338 * 300.00082 * 1 2 3 30 30 H 1.08999 * 109.47180 * 60.00199 * 1 2 3 31 31 H 1.09003 * 109.47532 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46942 * 239.99663 * 2 1 3 33 33 H 1.09004 * 109.46954 * 120.00237 * 2 1 3 34 34 H 1.08002 * 120.04053 * 359.97438 * 7 6 4 35 35 H 1.07996 * 119.84980 * 180.34574 * 8 7 6 36 36 H 1.08000 * 119.81043 * 179.69996 * 9 8 7 37 37 H 1.08003 * 119.96635 * 180.02562 * 10 9 8 38 38 H 1.07995 * 126.61155 * 0.04790 * 13 12 11 39 39 H 1.07993 * 125.48985 * 180.11705 * 14 13 12 40 40 H 1.08997 * 112.94766 * 354.10423 * 17 3 2 41 41 H 1.09004 * 113.77011 * 336.34988 * 18 17 3 42 42 H 1.09000 * 113.76928 * 107.74530 * 18 17 3 43 43 H 0.97005 * 119.99746 * 180.02562 * 23 22 20 44 44 H 1.08994 * 113.77480 * 221.15683 * 28 19 18 45 45 H 1.09005 * 113.76914 * 89.75468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1416 2.0524 1.1622 5 8 2.4511 3.2280 1.1554 6 6 1.9010 1.3598 2.4436 7 6 2.6324 0.2166 2.7720 8 6 2.4077 -0.4217 3.9730 9 6 1.4502 0.0582 4.8512 10 6 0.7154 1.1843 4.5362 11 6 0.9334 1.8432 3.3351 12 7 0.1908 2.9836 3.0149 13 6 -0.6967 3.6344 3.8195 14 6 -1.1759 4.6765 3.1083 15 7 -0.6139 4.6722 1.8987 16 7 0.2052 3.6836 1.7987 17 6 2.3726 2.0328 -1.2634 18 6 3.6711 2.8566 -1.1931 19 7 2.9478 3.8735 -1.9853 20 6 3.3296 4.8766 -2.8357 21 1 2.5830 5.5001 -3.3051 22 6 4.6763 5.0922 -3.0944 23 7 5.5861 4.3321 -2.5228 24 14 5.1971 6.4610 -4.2540 25 1 5.4002 7.7133 -3.4820 26 1 6.4657 6.0835 -4.9273 27 1 4.1396 6.6745 -5.2744 28 6 1.6497 3.3724 -1.4939 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3765 -0.1642 2.0881 35 1 2.9779 -1.3026 4.2285 36 1 1.2774 -0.4509 5.7878 37 1 -0.0293 1.5529 5.2261 38 1 -0.9631 3.3687 4.8318 39 1 -1.9009 5.3953 3.4602 40 1 2.3272 1.3571 -2.1174 41 1 3.9288 3.1856 -0.1864 42 1 4.5092 2.4014 -1.7208 43 1 6.5272 4.4830 -2.7033 44 1 0.8768 3.3281 -2.2612 45 1 1.3122 3.8532 -0.5757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957466882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = 190.927497 kcal Electronic energy + Delta-G solvation = -30862.707612 eV Core-core repulsion = 26886.367256 eV Total energy + Delta-G solvation = -3976.340356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.19969 -40.40648 -38.90809 -36.57606 -35.32642 -34.52577 -32.09460 -31.50267 -30.71216 -30.00768 -29.73541 -27.20190 -24.93223 -24.47921 -24.20740 -23.19534 -23.01253 -21.61437 -21.37827 -20.11214 -18.99162 -18.19422 -16.91536 -16.43786 -16.01310 -15.74766 -15.68690 -15.41931 -15.19046 -14.69657 -14.43880 -14.28336 -14.02883 -13.89799 -13.61441 -13.58480 -13.17657 -12.83889 -12.33882 -12.25879 -12.16764 -11.89422 -11.51827 -11.38037 -11.30955 -11.20329 -11.06047 -11.02352 -10.97270 -10.73297 -10.48322 -9.92737 -9.83027 -9.47776 -9.37024 -9.28447 -9.12420 -8.61890 -8.47937 -7.92003 -6.58347 -5.56335 -2.85066 0.30579 0.75012 1.75827 2.08532 2.61352 2.99885 3.22815 3.51778 3.53004 3.57386 3.58444 4.14994 4.29944 4.45761 4.60594 4.66086 4.67032 4.90567 4.92680 5.01522 5.05570 5.14251 5.26507 5.32933 5.37436 5.47959 5.52220 5.69921 5.75197 5.81396 5.85250 5.86391 5.91635 5.99102 6.01690 6.13290 6.22668 6.25927 6.56685 6.70148 6.81806 6.88471 7.24625 7.47579 7.73860 7.79986 7.91760 8.18793 8.21973 8.70043 9.25966 9.91917 10.85215 11.61558 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.003843 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.068666 B = 7283.984947 C = 8157.752086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.594 5.594 4 C 0.555 3.445 5 O -0.476 6.476 6 C -0.106 4.106 7 C -0.071 4.071 8 C -0.123 4.123 9 C -0.085 4.085 10 C -0.135 4.135 11 C 0.179 3.821 12 N -0.329 5.329 13 C 0.007 3.993 14 C -0.073 4.073 15 N -0.235 5.235 16 N 0.000 5.000 17 C 0.091 3.909 18 C 0.158 3.842 19 N -0.604 5.604 20 C -0.209 4.209 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.909 3.091 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.110 3.890 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.191 0.809 39 H 0.187 0.813 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.250 0.750 44 H 0.030 0.970 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.004 -15.624 18.656 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.328 5.328 4 C 0.340 3.660 5 O -0.347 6.347 6 C -0.111 4.111 7 C -0.090 4.090 8 C -0.141 4.141 9 C -0.104 4.104 10 C -0.156 4.156 11 C 0.085 3.915 12 N -0.111 5.111 13 C -0.142 4.142 14 C -0.226 4.226 15 N -0.106 5.106 16 N 0.022 4.978 17 C -0.012 4.012 18 C 0.032 3.968 19 N -0.330 5.330 20 C -0.337 4.337 21 H 0.096 0.904 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.017 4.017 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.208 0.792 39 H 0.204 0.796 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.047 -14.609 16.999 25.446 hybrid contribution -0.135 0.678 0.695 0.980 sum -12.181 -13.932 17.694 25.604 Atomic orbital electron populations 1.22163 0.96370 1.01405 1.02463 1.21681 0.94284 0.83645 1.02947 1.47952 1.64948 1.13317 1.06616 1.17735 0.79017 0.86511 0.82773 1.90921 1.43711 1.14042 1.86063 1.20022 0.97302 0.97142 0.96679 1.21276 0.98061 0.92481 0.97152 1.21213 0.98475 1.00723 0.93733 1.21086 0.94767 0.94855 0.99652 1.20812 1.02550 0.97267 0.95013 1.17435 0.93057 0.86076 0.94961 1.48110 1.29376 1.20526 1.13088 1.23433 0.95087 0.96230 0.99418 1.23241 1.06479 1.01482 0.91383 1.74489 1.04717 1.13228 1.18196 1.82727 1.14850 1.01534 0.98720 1.24093 1.00559 0.93373 0.83190 1.22671 0.92013 0.86414 0.95678 1.45671 1.01052 1.36997 1.49302 1.19016 0.91376 1.06971 1.16332 0.90406 1.24736 0.95512 0.99709 1.00809 1.69835 0.99759 1.40701 1.46825 0.86144 0.77746 0.81777 0.80303 1.21807 1.21815 1.20715 1.23046 0.90239 0.91002 0.97401 0.93320 0.91972 0.92051 0.90065 0.90785 0.83987 0.84610 0.84549 0.84694 0.79199 0.79616 0.88072 0.93130 0.91699 0.93969 0.95137 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.20 37.16 0.38 -1.51 16 2 C 0.10 1.18 5.94 -4.05 -0.02 1.15 16 3 N -0.59 -10.08 2.74 -169.10 -0.46 -10.54 16 4 C 0.55 10.21 5.06 -12.43 -0.06 10.14 16 5 O -0.48 -11.21 10.55 5.30 0.06 -11.15 16 6 C -0.11 -1.48 4.80 -104.82 -0.50 -1.98 16 7 C -0.07 -0.72 7.63 -39.20 -0.30 -1.02 16 8 C -0.12 -0.88 10.02 -39.62 -0.40 -1.28 16 9 C -0.08 -0.55 10.03 -39.53 -0.40 -0.95 16 10 C -0.14 -1.12 9.47 -39.45 -0.37 -1.50 16 11 C 0.18 2.28 6.70 -83.32 -0.56 1.72 16 12 N -0.33 -4.80 3.82 -10.32 -0.04 -4.84 16 13 C 0.01 0.07 10.92 -16.72 -0.18 -0.11 16 14 C -0.07 -0.91 11.86 -18.04 -0.21 -1.12 16 15 N -0.24 -4.24 12.33 30.09 0.37 -3.87 16 16 N 0.00 0.00 9.18 60.35 0.55 0.55 16 17 C 0.09 1.90 4.60 -70.14 -0.32 1.57 16 18 C 0.16 4.16 6.78 -2.84 -0.02 4.14 16 19 N -0.60 -17.38 3.70 -177.88 -0.66 -18.04 16 20 C -0.21 -6.44 10.70 -15.06 -0.16 -6.60 16 21 H 0.08 2.33 7.83 -52.49 -0.41 1.92 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.92 -29.37 11.39 55.49 0.63 -28.74 16 24 Si 0.91 23.80 29.55 -169.99 -5.02 18.78 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.11 2.68 8.27 -2.97 -0.02 2.65 16 29 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 33 H 0.07 0.73 4.71 -51.93 -0.24 0.49 16 34 H 0.14 1.31 7.50 -52.49 -0.39 0.92 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.14 0.72 6.88 -52.48 -0.36 0.36 16 38 H 0.19 1.01 7.21 -52.49 -0.38 0.63 16 39 H 0.19 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.10 1.93 7.91 -51.93 -0.41 1.52 16 41 H 0.05 1.46 5.70 -51.93 -0.30 1.16 16 42 H 0.06 1.83 7.16 -51.93 -0.37 1.46 16 43 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.75 5.81 -51.93 -0.30 1.45 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -40.65 366.59 -7.97 -48.62 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.67 Total: -1.14 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -3.26 Total: 4.86 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: 0.40 Total: -65.49 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.06 Total: -11.15 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.02 Total: 18.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -40.65 -7.97 -48.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957466882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.548 kcal (2) G-P(sol) polarization free energy of solvation -40.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds