Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47285 * 2 1 4 4 C 1.34775 * 120.00314 * 84.71553 * 3 2 1 5 5 O 1.21576 * 120.00429 * 185.47104 * 4 3 2 6 6 C 1.47627 * 119.99545 * 5.47483 * 4 3 2 7 7 C 1.39630 * 120.18828 * 56.93894 * 6 4 3 8 8 C 1.37859 * 119.91374 * 179.67546 * 7 6 4 9 9 C 1.38502 * 120.30220 * 0.61868 * 8 7 6 10 10 C 1.38103 * 120.38535 * 359.67999 * 9 8 7 11 11 C 1.38723 * 120.07719 * 359.97438 * 10 9 8 12 12 N 1.39802 * 120.15470 * 180.02562 * 11 10 9 13 13 C 1.36333 * 126.86653 * 6.00229 * 12 11 10 14 14 C 1.34960 * 106.77600 * 179.90719 * 13 12 11 15 15 N 1.33377 * 109.01809 * 0.37554 * 14 13 12 16 16 N 1.28769 * 109.92958 * 359.76329 * 15 14 13 17 17 C 1.46502 * 119.99947 * 264.72087 * 3 2 1 18 18 C 1.53939 * 113.74430 * 222.50649 * 17 3 2 19 19 N 1.47808 * 86.04061 * 222.08678 * 18 17 3 20 20 C 1.36938 * 134.45921 * 204.64761 * 19 18 17 21 21 H 1.08002 * 120.00530 * 179.86417 * 20 19 18 22 22 C 1.38814 * 119.99623 * 359.86116 * 20 19 18 23 23 N 1.31616 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99665 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47150 * 90.00431 * 24 22 20 26 26 H 1.48504 * 109.47193 * 209.99879 * 24 22 20 27 27 H 1.48495 * 109.47271 * 330.00053 * 24 22 20 28 28 C 1.47575 * 91.05303 * 24.54757 * 19 18 17 29 29 H 1.08991 * 109.47338 * 300.00082 * 1 2 3 30 30 H 1.08999 * 109.47180 * 60.00199 * 1 2 3 31 31 H 1.09003 * 109.47532 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46942 * 239.99663 * 2 1 3 33 33 H 1.09004 * 109.46954 * 120.00237 * 2 1 3 34 34 H 1.08002 * 120.04053 * 359.97438 * 7 6 4 35 35 H 1.07996 * 119.84980 * 180.34574 * 8 7 6 36 36 H 1.08000 * 119.81043 * 179.69996 * 9 8 7 37 37 H 1.08003 * 119.96635 * 180.02562 * 10 9 8 38 38 H 1.07995 * 126.61155 * 0.04790 * 13 12 11 39 39 H 1.07993 * 125.48985 * 180.11705 * 14 13 12 40 40 H 1.08997 * 112.94766 * 354.10423 * 17 3 2 41 41 H 1.09004 * 113.77011 * 336.34988 * 18 17 3 42 42 H 1.09000 * 113.76928 * 107.74530 * 18 17 3 43 43 H 0.97005 * 119.99746 * 180.02562 * 23 22 20 44 44 H 1.08994 * 113.77480 * 221.15683 * 28 19 18 45 45 H 1.09005 * 113.76914 * 89.75468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1416 2.0524 1.1622 5 8 2.4511 3.2280 1.1554 6 6 1.9010 1.3598 2.4436 7 6 2.6324 0.2166 2.7720 8 6 2.4077 -0.4217 3.9730 9 6 1.4502 0.0582 4.8512 10 6 0.7154 1.1843 4.5362 11 6 0.9334 1.8432 3.3351 12 7 0.1908 2.9836 3.0149 13 6 -0.6967 3.6344 3.8195 14 6 -1.1759 4.6765 3.1083 15 7 -0.6139 4.6722 1.8987 16 7 0.2052 3.6836 1.7987 17 6 2.3726 2.0328 -1.2634 18 6 3.6711 2.8566 -1.1931 19 7 2.9478 3.8735 -1.9853 20 6 3.3296 4.8766 -2.8357 21 1 2.5830 5.5001 -3.3051 22 6 4.6763 5.0922 -3.0944 23 7 5.5861 4.3321 -2.5228 24 14 5.1971 6.4610 -4.2540 25 1 5.4002 7.7133 -3.4820 26 1 6.4657 6.0835 -4.9273 27 1 4.1396 6.6745 -5.2744 28 6 1.6497 3.3724 -1.4939 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3765 -0.1642 2.0881 35 1 2.9779 -1.3026 4.2285 36 1 1.2774 -0.4509 5.7878 37 1 -0.0293 1.5529 5.2261 38 1 -0.9631 3.3687 4.8318 39 1 -1.9009 5.3953 3.4602 40 1 2.3272 1.3571 -2.1174 41 1 3.9288 3.1856 -0.1864 42 1 4.5092 2.4014 -1.7208 43 1 6.5272 4.4830 -2.7033 44 1 0.8768 3.3281 -2.2612 45 1 1.3122 3.8532 -0.5757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957466882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = 161.161235 kcal Electronic energy + Delta-G solvation = -30863.998374 eV Core-core repulsion = 26886.367256 eV Total energy + Delta-G solvation = -3977.631118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.17695 -41.65984 -40.03134 -38.28242 -36.66254 -35.44872 -34.21210 -32.47272 -31.59561 -31.29248 -30.63359 -29.20845 -26.55281 -26.17624 -25.07896 -24.83496 -24.01683 -22.75930 -22.25850 -21.68243 -20.26769 -19.11776 -18.75960 -18.01532 -17.30292 -16.88408 -16.71940 -16.62690 -16.44138 -16.07801 -15.77242 -15.58136 -15.26806 -14.99846 -14.87720 -14.60787 -14.34395 -14.11508 -13.95631 -13.66047 -13.38955 -13.13406 -12.95463 -12.86550 -12.74816 -12.57131 -12.51866 -12.28345 -12.14099 -12.07024 -12.01206 -11.91957 -11.76779 -11.47828 -10.99836 -10.51087 -10.32876 -10.02940 -9.46676 -9.42596 -8.87268 -7.91731 -5.24360 -0.52296 0.06098 0.92298 1.24750 1.38865 1.43932 1.52285 1.62433 1.79747 2.03449 2.47756 2.67601 3.26637 3.34778 3.46678 3.54152 3.63284 3.84052 3.92189 4.06273 4.10277 4.15051 4.22673 4.27620 4.31198 4.36028 4.42387 4.54103 4.59889 4.62822 4.77814 4.81573 4.88762 4.91547 5.10858 5.13363 5.21385 5.23677 5.26327 5.30158 5.35684 5.39182 5.46768 5.63138 5.89530 5.92587 5.96909 6.55951 6.90367 7.19375 7.38492 7.57936 8.57988 9.26026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.003843 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.068666 B = 7283.984947 C = 8157.752086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.596 5.596 4 C 0.553 3.447 5 O -0.540 6.540 6 C -0.138 4.138 7 C -0.081 4.081 8 C -0.105 4.105 9 C -0.067 4.067 10 C -0.123 4.123 11 C 0.144 3.856 12 N -0.330 5.330 13 C 0.030 3.970 14 C -0.087 4.087 15 N -0.291 5.291 16 N -0.071 5.071 17 C 0.129 3.871 18 C 0.163 3.837 19 N -0.632 5.632 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.984 3.016 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.109 3.891 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.172 0.828 38 H 0.252 0.748 39 H 0.220 0.780 40 H 0.125 0.875 41 H 0.019 0.981 42 H 0.039 0.961 43 H 0.249 0.751 44 H 0.037 0.963 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.323 -18.867 21.910 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.341 3.659 5 O -0.416 6.416 6 C -0.143 4.143 7 C -0.100 4.100 8 C -0.124 4.124 9 C -0.085 4.085 10 C -0.143 4.143 11 C 0.050 3.950 12 N -0.112 5.112 13 C -0.119 4.119 14 C -0.242 4.242 15 N -0.160 5.160 16 N -0.048 5.048 17 C 0.024 3.976 18 C 0.037 3.963 19 N -0.358 5.358 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.811 3.189 25 H -0.218 1.218 26 H -0.211 1.211 27 H -0.190 1.190 28 C -0.018 4.018 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.162 0.838 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.190 0.810 38 H 0.268 0.732 39 H 0.237 0.763 40 H 0.142 0.858 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.393 -17.925 20.239 30.171 hybrid contribution 0.220 1.583 -0.048 1.599 sum -13.173 -16.341 20.191 29.124 Atomic orbital electron populations 1.22079 0.95676 1.03024 1.00642 1.22035 0.94756 0.80829 1.05194 1.47933 1.64815 1.15126 1.04945 1.18505 0.77050 0.85924 0.84458 1.90875 1.46397 1.17127 1.87245 1.19786 1.00308 0.99157 0.95045 1.21418 0.97830 0.91720 0.99002 1.21678 0.97993 1.00838 0.91851 1.21700 0.92650 0.93449 1.00675 1.21320 1.02872 0.96899 0.93223 1.17964 0.93806 0.86477 0.96704 1.48347 1.29518 1.20742 1.12633 1.24406 0.92406 0.94307 1.00782 1.23987 1.07026 1.03039 0.90189 1.74418 1.06061 1.14244 1.21326 1.82689 1.17120 1.03426 1.01597 1.23343 0.95694 0.92571 0.85946 1.22414 0.93527 0.87197 0.93164 1.46096 1.03174 1.37191 1.49344 1.19428 0.92023 1.07983 1.17065 0.90531 1.25684 0.95273 1.02368 1.02746 1.70049 0.99782 1.42265 1.48222 0.85003 0.77653 0.78015 0.78195 1.21844 1.21061 1.18968 1.23053 0.89248 0.92976 0.96483 0.94986 0.93993 0.88483 0.88282 0.88007 0.83825 0.80847 0.79841 0.81035 0.73229 0.76308 0.85751 0.96283 0.94264 0.94259 0.94447 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 10.20 71.98 0.73 -2.67 16 2 C 0.09 2.15 5.94 86.38 0.51 2.66 16 3 N -0.60 -21.11 2.74 -807.17 -2.21 -23.32 16 4 C 0.55 21.63 5.06 86.72 0.44 22.07 16 5 O -0.54 -27.95 10.55 -3.95 -0.04 -27.99 16 6 C -0.14 -3.83 4.80 -19.99 -0.10 -3.92 16 7 C -0.08 -1.48 7.63 22.52 0.17 -1.31 16 8 C -0.11 -0.96 10.02 22.24 0.22 -0.74 16 9 C -0.07 -0.44 10.03 22.30 0.22 -0.21 16 10 C -0.12 -1.44 9.47 22.35 0.21 -1.23 16 11 C 0.14 3.45 6.70 38.46 0.26 3.71 16 12 N -0.33 -9.66 3.82 -186.57 -0.71 -10.37 16 13 C 0.03 0.59 10.92 83.24 0.91 1.50 16 14 C -0.09 -2.19 11.86 83.70 0.99 -1.19 16 15 N -0.29 -11.35 12.33 -58.72 -0.72 -12.08 16 16 N -0.07 -2.94 9.18 37.02 0.34 -2.60 16 17 C 0.13 5.70 4.60 46.75 0.21 5.92 16 18 C 0.16 9.26 6.78 86.44 0.59 9.85 16 19 N -0.63 -38.85 3.70 -716.70 -2.65 -41.51 16 20 C -0.24 -15.38 10.70 84.03 0.90 -14.48 16 21 H 0.08 4.82 7.83 -2.91 -0.02 4.80 16 22 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 23 N -0.95 -63.61 11.39 21.65 0.25 -63.36 16 24 Si 0.98 50.64 29.55 68.60 2.03 52.67 16 25 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 26 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 28 C 0.11 5.70 8.27 86.49 0.72 6.42 16 29 H 0.03 0.80 8.02 -2.39 -0.02 0.79 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.93 7.88 -2.39 -0.02 1.91 16 33 H 0.10 1.81 4.71 -2.39 -0.01 1.79 16 34 H 0.14 2.45 7.50 -2.91 -0.02 2.43 16 35 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.18 -0.37 8.06 -2.91 -0.02 -0.40 16 37 H 0.17 0.66 6.88 -2.91 -0.02 0.64 16 38 H 0.25 1.32 7.21 -2.91 -0.02 1.30 16 39 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.12 4.86 7.91 -2.39 -0.02 4.85 16 41 H 0.02 1.22 5.70 -2.38 -0.01 1.21 16 42 H 0.04 2.38 7.16 -2.39 -0.02 2.36 16 43 H 0.25 15.86 8.31 -92.70 -0.77 15.09 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.05 2.81 5.81 -2.38 -0.01 2.80 16 Total: -1.00 -103.08 366.59 4.75 -98.33 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.02 Total: 7.73 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 7.46 Total: 22.50 kcal Atomic # 7 Polarization: -147.52 SS G_CDS: -5.72 Total: -153.24 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.04 Total: -27.99 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.03 Total: 52.67 kcal Total: -103.08 4.75 -98.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957466882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.494 kcal (2) G-P(sol) polarization free energy of solvation -103.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds