Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47257 * 2 1 4 4 C 1.50700 * 109.47197 * 240.00206 * 2 1 3 5 5 O 1.21286 * 120.00180 * 239.99812 * 4 2 1 6 6 N 1.34781 * 119.99746 * 60.00029 * 4 2 1 7 7 C 1.46503 * 119.99640 * 180.02562 * 6 4 2 8 8 H 1.08995 * 110.73150 * 36.94950 * 7 6 4 9 9 C 1.54346 * 110.81864 * 273.54328 * 7 6 4 10 10 C 1.51374 * 105.17238 * 268.12364 * 9 7 6 11 11 C 1.38495 * 130.39670 * 162.81530 * 10 9 7 12 12 C 1.38102 * 120.21722 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.93549 * 359.97438 * 12 11 10 14 14 C 1.38108 * 119.93139 * 359.97438 * 13 12 11 15 15 C 1.38222 * 109.75566 * 342.81492 * 10 9 7 16 16 C 1.51374 * 109.75864 * 359.97438 * 15 10 9 17 17 H 1.08998 * 110.29839 * 136.11499 * 16 15 10 18 18 N 1.46501 * 110.30233 * 258.26765 * 16 15 10 19 19 C 1.36936 * 119.99657 * 270.74513 * 18 16 15 20 20 H 1.07995 * 120.00387 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99757 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99995 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00240 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46880 * 60.00133 * 23 21 19 25 25 H 1.48495 * 109.47595 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47238 * 300.00509 * 23 21 19 27 27 N 1.46505 * 109.47374 * 120.00157 * 2 1 3 28 28 C 1.34428 * 126.82137 * 35.02220 * 27 2 1 29 29 N 1.30829 * 108.07758 * 179.97438 * 28 27 2 30 30 C 1.33239 * 109.82920 * 0.02562 * 29 28 27 31 31 N 1.30714 * 108.94945 * 359.97438 * 30 29 28 32 32 H 1.08996 * 109.47253 * 59.99867 * 1 2 3 33 33 H 1.09000 * 109.46545 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46798 * 299.99550 * 1 2 3 35 35 H 0.97000 * 120.00140 * 359.97438 * 6 4 2 36 36 H 1.08999 * 110.31032 * 27.04822 * 9 7 6 37 37 H 1.08997 * 110.30499 * 149.10412 * 9 7 6 38 38 H 1.07996 * 119.89026 * 359.97299 * 11 10 9 39 39 H 1.07992 * 120.03045 * 180.02562 * 12 11 10 40 40 H 1.07992 * 120.03300 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.88653 * 179.97438 * 14 13 12 42 42 H 0.96994 * 119.99883 * 90.74768 * 18 16 15 43 43 H 0.96997 * 120.00108 * 179.97438 * 22 21 19 44 44 H 1.08003 * 125.95935 * 359.97438 * 28 27 2 45 45 H 1.08002 * 125.53210 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7297 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6508 8 1 2.2065 -2.0195 -3.4954 9 6 3.5954 -0.4280 -4.0474 10 6 3.3424 0.6973 -5.0278 11 6 4.1778 1.7119 -5.4647 12 6 3.7225 2.6423 -6.3780 13 6 2.4288 2.5612 -6.8588 14 6 1.5946 1.5496 -6.4252 15 6 2.0490 0.6162 -5.5085 16 6 1.3445 -0.5694 -4.8845 17 1 0.3358 -0.2919 -4.5787 18 7 1.3008 -1.6891 -5.8283 19 6 0.2516 -1.8092 -6.7000 20 1 -0.5435 -1.0783 -6.6920 21 6 0.2099 -2.8704 -7.5939 22 7 1.1786 -3.7614 -7.6033 23 14 -1.2217 -3.0347 -8.7825 24 1 -1.2848 -1.8316 -9.6508 25 1 -1.0305 -4.2433 -9.6237 26 1 -2.4884 -3.1600 -8.0175 27 7 2.0184 -0.6907 1.1962 28 6 1.4561 -1.7522 1.7996 29 7 2.1941 -2.0702 2.8320 30 6 3.2309 -1.2381 2.9201 31 7 3.1672 -0.3754 1.9401 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.1487 0.5387 -2.5435 36 1 4.1237 -0.0539 -3.1705 37 1 4.1689 -1.2238 -4.5227 38 1 5.1884 1.7761 -5.0892 39 1 4.3766 3.4319 -6.7169 40 1 2.0712 3.2877 -7.5734 41 1 0.5840 1.4872 -6.8009 42 1 2.0151 -2.3453 -5.8357 43 1 1.1493 -4.5031 -8.2276 44 1 0.5528 -2.2548 1.4866 45 1 3.9995 -1.2709 3.6782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960258227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 84.881365 kcal Electronic energy + Delta-G solvation = -29321.152155 eV Core-core repulsion = 25340.213294 eV Total energy + Delta-G solvation = -3980.938861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.12084 -41.64475 -40.38658 -37.60943 -36.07532 -35.78697 -34.05521 -32.78578 -32.34955 -31.34912 -30.99400 -29.07257 -27.72584 -26.29715 -25.18992 -23.86178 -22.99487 -22.81992 -21.84341 -21.55639 -21.15340 -19.43609 -18.82648 -18.16456 -17.45144 -16.99641 -16.67349 -16.50592 -16.34363 -16.04700 -15.75860 -15.58178 -15.28134 -15.15248 -15.09400 -14.88546 -14.26132 -14.24044 -13.96406 -13.73407 -13.39931 -13.30098 -13.12313 -12.96188 -12.79396 -12.66854 -12.49593 -12.33423 -12.25548 -12.00877 -11.85525 -11.66497 -11.52485 -11.06060 -10.99341 -10.79152 -10.56589 -10.30649 -9.63573 -9.43195 -9.08240 -7.95676 -5.26353 0.54023 0.55723 0.59388 1.17468 1.36933 1.48231 1.50546 1.56421 1.96206 2.05335 2.55808 2.93750 3.32200 3.36050 3.37045 3.46097 3.53881 3.71756 3.77151 3.96303 4.03649 4.10675 4.17100 4.24997 4.26987 4.31144 4.43618 4.60244 4.65805 4.67540 4.72127 4.78230 4.88229 4.94253 5.06761 5.19355 5.24034 5.29302 5.37448 5.46022 5.50440 5.64717 5.70471 5.78220 5.88027 6.20299 6.24393 6.37287 7.03549 7.08379 7.30253 7.98929 8.23374 9.27085 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003244 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.867325 B = 8628.214751 C =10292.067520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.151 0.849 4 C 0.503 3.497 5 O -0.572 6.572 6 N -0.689 5.689 7 C 0.151 3.849 8 H 0.076 0.924 9 C -0.080 4.080 10 C -0.105 4.105 11 C -0.120 4.120 12 C -0.123 4.123 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.113 4.113 16 C 0.211 3.789 17 H 0.074 0.926 18 N -0.719 5.719 19 C -0.236 4.236 20 H 0.084 0.916 21 C -0.071 4.071 22 N -0.969 5.969 23 Si 0.971 3.029 24 H -0.277 1.277 25 H -0.301 1.301 26 H -0.274 1.274 27 N -0.367 5.367 28 C 0.268 3.732 29 N -0.574 5.574 30 C 0.194 3.806 31 N -0.347 5.347 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.418 0.582 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.113 0.887 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.244 0.756 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 15.726 14.595 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.168 0.832 4 C 0.289 3.711 5 O -0.450 6.450 6 N -0.341 5.341 7 C 0.044 3.956 8 H 0.094 0.906 9 C -0.118 4.118 10 C -0.105 4.105 11 C -0.138 4.138 12 C -0.141 4.141 13 C -0.145 4.145 14 C -0.126 4.126 15 C -0.116 4.116 16 C 0.101 3.899 17 H 0.092 0.908 18 N -0.357 5.357 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.264 4.264 22 N -0.619 5.619 23 Si 0.800 3.200 24 H -0.203 1.203 25 H -0.228 1.228 26 H -0.200 1.200 27 N -0.157 5.157 28 C -0.028 4.028 29 N -0.302 5.302 30 C -0.109 4.109 31 N -0.174 5.174 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.132 0.868 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.260 0.740 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.498 15.369 14.626 21.222 hybrid contribution -0.338 -0.749 -1.325 1.559 sum -0.836 14.620 13.301 19.783 Atomic orbital electron populations 1.22295 0.86780 1.05532 1.07065 1.21451 0.98638 0.97722 0.78346 0.83164 1.21188 0.80040 0.84450 0.85466 1.90786 1.39158 1.28074 1.87018 1.45585 1.52924 1.31902 1.03700 1.21500 0.93273 0.96558 0.84271 0.90554 1.21285 0.97101 0.95926 0.97507 1.20575 0.94843 0.96332 0.98789 1.20823 0.99626 0.94676 0.98664 1.21280 0.96168 0.99482 0.97211 1.21312 0.94273 0.98578 1.00304 1.20778 1.00490 0.94623 0.96699 1.21530 0.96497 0.95643 0.97971 1.19898 0.96875 0.85545 0.87552 0.90834 1.42401 1.25756 1.26786 1.40712 1.19536 0.99714 1.06938 1.10587 0.89847 1.25554 1.00861 0.97860 1.02086 1.69821 1.35230 1.15901 1.40922 0.85255 0.79324 0.76624 0.78818 1.20320 1.22801 1.19978 1.50212 1.18661 1.24915 1.21901 1.26533 0.99688 0.87426 0.89157 1.70576 1.08030 1.29430 1.22144 1.26589 0.97549 0.89439 0.97300 1.77959 1.03938 1.26594 1.08888 0.86656 0.90436 0.88091 0.74355 0.90454 0.91162 0.85184 0.83430 0.83987 0.86845 0.79540 0.94093 0.74016 0.74058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.75 71.98 0.63 -0.64 16 2 C 0.15 2.35 3.77 44.24 0.17 2.52 16 3 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.50 12.41 7.22 87.66 0.63 13.04 16 5 O -0.57 -20.44 16.15 -3.05 -0.05 -20.49 16 6 N -0.69 -15.66 5.04 -438.18 -2.21 -17.87 16 7 C 0.15 4.80 2.94 45.91 0.13 4.93 16 8 H 0.08 2.97 7.64 -2.39 -0.02 2.95 16 9 C -0.08 -2.53 6.48 30.52 0.20 -2.33 16 10 C -0.10 -3.26 6.14 -19.59 -0.12 -3.38 16 11 C -0.12 -3.23 10.04 22.30 0.22 -3.00 16 12 C -0.12 -2.97 10.05 22.24 0.22 -2.75 16 13 C -0.13 -3.29 10.05 22.24 0.22 -3.07 16 14 C -0.11 -3.36 10.04 22.30 0.22 -3.14 16 15 C -0.11 -3.79 5.77 -19.59 -0.11 -3.91 16 16 C 0.21 7.53 3.11 44.92 0.14 7.67 16 17 H 0.07 2.45 7.99 -2.39 -0.02 2.43 16 18 N -0.72 -34.12 5.13 -323.28 -1.66 -35.78 16 19 C -0.24 -12.24 9.96 84.03 0.84 -11.41 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 22 N -0.97 -58.21 13.06 21.65 0.28 -57.92 16 23 Si 0.97 44.36 29.55 68.60 2.03 46.39 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 N -0.37 -8.11 3.04 -335.01 -1.02 -9.13 16 28 C 0.27 5.72 11.77 180.36 2.12 7.84 16 29 N -0.57 -14.34 11.19 -204.00 -2.28 -16.62 16 30 C 0.19 4.50 13.03 180.77 2.36 6.85 16 31 N -0.35 -8.96 12.70 -61.24 -0.78 -9.74 16 32 H 0.11 0.48 7.56 -2.39 -0.02 0.47 16 33 H 0.08 0.66 7.22 -2.39 -0.02 0.64 16 34 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.42 6.58 8.00 -92.71 -0.74 5.84 16 36 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.37 19.76 7.83 -92.71 -0.73 19.04 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.24 3.27 7.32 -2.91 -0.02 3.24 16 45 H 0.24 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -78.62 384.30 2.23 -76.39 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.43 Total: 39.00 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 8.34 Total: 5.77 kcal Atomic # 7 Polarization: -139.40 SS G_CDS: -7.66 Total: -147.06 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.62 2.23 -76.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960258227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.271 kcal (2) G-P(sol) polarization free energy of solvation -78.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds