Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46560 * 2 1 4 4 N 1.46497 * 109.47158 * 120.00030 * 2 1 3 5 5 C 1.34781 * 120.00373 * 274.99860 * 4 2 1 6 6 O 1.21612 * 119.99552 * 0.02562 * 5 4 2 7 7 C 1.47312 * 120.00159 * 180.02562 * 5 4 2 8 8 C 1.37923 * 126.80263 * 0.14304 * 7 5 4 9 9 N 1.34199 * 107.89103 * 180.24688 * 8 7 5 10 10 H 0.96996 * 125.16645 * 179.79650 * 9 8 7 11 11 N 1.39779 * 109.66964 * 359.75918 * 9 8 7 12 12 C 1.31387 * 109.06735 * 359.97438 * 11 9 8 13 13 C 1.48239 * 126.51004 * 179.97438 * 12 11 9 14 14 C 1.39376 * 119.73393 * 335.02767 * 13 12 11 15 15 C 1.38385 * 119.06719 * 180.22685 * 14 13 12 16 16 C 1.38795 * 118.51511 * 359.52940 * 15 14 13 17 17 C 1.38257 * 119.37286 * 0.45116 * 16 15 14 18 18 N 1.31760 * 120.89536 * 359.79342 * 17 16 15 19 19 C 1.52997 * 109.46782 * 240.00722 * 2 1 3 20 20 C 1.53939 * 113.73982 * 158.74198 * 19 2 1 21 21 N 1.47811 * 86.03515 * 222.07846 * 20 19 2 22 22 C 1.36945 * 134.45761 * 204.64059 * 21 20 19 23 23 H 1.07999 * 119.99885 * 173.34565 * 22 21 20 24 24 C 1.38810 * 120.00138 * 353.35223 * 22 21 20 25 25 N 1.31624 * 119.99770 * 5.05592 * 24 22 21 26 26 Si 1.86795 * 120.00165 * 185.06305 * 24 22 21 27 27 H 1.48501 * 109.47298 * 94.98432 * 26 24 22 28 28 H 1.48499 * 109.47143 * 214.98429 * 26 24 22 29 29 H 1.48504 * 109.47026 * 334.98205 * 26 24 22 30 30 C 1.47579 * 91.05125 * 24.55032 * 21 20 19 31 31 H 1.08993 * 109.46919 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47011 * 299.99502 * 1 2 3 33 33 H 1.08997 * 109.47219 * 59.99420 * 1 2 3 34 34 H 0.96996 * 119.99579 * 95.00132 * 4 2 1 35 35 H 1.07993 * 126.05460 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.46899 * 359.95560 * 14 13 12 37 37 H 1.07996 * 120.74803 * 179.72789 * 15 14 13 38 38 H 1.08000 * 120.31797 * 180.21903 * 16 15 14 39 39 H 1.07993 * 119.55446 * 179.76876 * 17 16 15 40 40 H 1.09000 * 112.94181 * 290.32821 * 19 2 1 41 41 H 1.08997 * 113.77215 * 336.34024 * 20 19 2 42 42 H 1.08999 * 113.77358 * 107.74321 * 20 19 2 43 43 H 0.97001 * 119.99645 * 180.02562 * 25 24 22 44 44 H 1.09007 * 113.76643 * 221.15709 * 30 21 20 45 45 H 1.08996 * 113.87506 * 89.76756 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3572 6 8 1.8575 1.1616 2.4119 7 6 2.6388 -0.7126 3.5598 8 6 3.0080 -2.0381 3.6557 9 7 3.3897 -2.2692 4.9213 10 1 3.6962 -3.1227 5.2654 11 7 3.2792 -1.0929 5.6683 12 6 2.8357 -0.1309 4.8910 13 6 2.5769 1.2741 5.2867 14 6 2.2945 1.5766 6.6176 15 6 2.0504 2.8922 6.9708 16 6 2.1064 3.8649 5.9824 17 6 2.3928 3.4943 4.6816 18 7 2.6164 2.2335 4.3710 19 6 2.0400 -0.7211 -1.2493 20 6 3.4847 -0.3519 -1.6317 21 7 2.9977 -0.3174 -3.0269 22 6 3.5874 -0.4754 -4.2528 23 1 2.9788 -0.5087 -5.1444 24 6 4.9671 -0.5928 -4.3493 25 7 5.7005 -0.6524 -3.2580 26 14 5.7830 -0.6659 -6.0281 27 1 6.2262 0.6954 -6.4228 28 1 6.9586 -1.5712 -5.9680 29 1 4.8129 -1.1800 -7.0280 30 6 1.6213 -0.0470 -2.5684 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6317 1.1525 35 1 2.9888 -2.7627 2.8552 36 1 2.2623 0.7948 7.3620 37 1 1.8246 3.1565 7.9933 38 1 1.9243 4.9011 6.2264 39 1 2.4334 4.2483 3.9096 40 1 1.8528 -1.7947 -1.2264 41 1 3.8047 0.6192 -1.2540 42 1 4.2070 -1.1445 -1.4368 43 1 6.6647 -0.7341 -3.3255 44 1 0.8585 -0.5968 -3.1200 45 1 1.3907 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969819105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = 142.494397 kcal Electronic energy + Delta-G solvation = -28861.701672 eV Core-core repulsion = 24883.261099 eV Total energy + Delta-G solvation = -3978.440573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33096 -39.84471 -39.17311 -37.71885 -34.53458 -33.10706 -32.44969 -32.18852 -31.14059 -30.19451 -29.35194 -27.44148 -24.87986 -24.38085 -23.99407 -23.62918 -22.89430 -21.21354 -20.48376 -19.83765 -19.18374 -18.18767 -16.90000 -16.69077 -16.21043 -16.06833 -15.74782 -15.67010 -15.16703 -14.82575 -14.30718 -14.04098 -13.91570 -13.79545 -13.70249 -13.46967 -13.25545 -12.85594 -12.71553 -12.36583 -11.97548 -11.90705 -11.57563 -11.31662 -11.22397 -11.19019 -10.85968 -10.67622 -10.45645 -10.25730 -9.92404 -9.84677 -9.67614 -9.51245 -9.33516 -9.08269 -9.07397 -8.74193 -8.66342 -8.48702 -6.80303 -5.73523 -3.04280 0.65807 1.26305 1.43343 2.17351 2.40464 3.41574 3.46599 3.48592 3.52704 3.72608 3.88898 3.95025 4.35725 4.49655 4.67250 4.76088 4.84604 4.98664 5.05032 5.14264 5.26103 5.34026 5.40208 5.41575 5.45798 5.61468 5.66921 5.78534 5.90053 5.93722 6.00808 6.04000 6.14122 6.16050 6.37402 6.47955 6.51972 6.59789 6.70236 6.80103 6.83910 7.00912 7.20725 7.30397 7.44160 7.62224 7.97125 8.02734 8.05912 8.76282 9.09232 9.75451 10.66767 11.44095 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002508 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.436891 B =11161.281413 C =11492.753020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.088 0.912 4 N -0.722 5.722 5 C 0.581 3.419 6 O -0.503 6.503 7 C -0.250 4.250 8 C 0.099 3.901 9 N -0.462 5.462 10 H 0.444 0.556 11 N -0.278 5.278 12 C 0.170 3.830 13 C 0.187 3.813 14 C -0.143 4.143 15 C -0.087 4.087 16 C -0.167 4.167 17 C 0.103 3.897 18 N -0.404 5.404 19 C -0.146 4.146 20 C 0.175 3.825 21 N -0.614 5.614 22 C -0.222 4.222 23 H 0.079 0.921 24 C -0.008 4.008 25 N -0.919 5.919 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.129 3.871 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.391 0.609 35 H 0.191 0.809 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.085 0.915 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.253 0.747 44 H 0.042 0.958 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 -0.664 22.183 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.106 0.894 4 N -0.373 5.373 5 C 0.367 3.633 6 O -0.376 6.376 7 C -0.265 4.265 8 C -0.050 4.050 9 N -0.169 5.169 10 H 0.289 0.711 11 N -0.101 5.101 12 C 0.001 3.999 13 C 0.049 3.951 14 C -0.165 4.165 15 C -0.113 4.113 16 C -0.187 4.187 17 C -0.056 4.056 18 N -0.113 5.113 19 C -0.166 4.166 20 C 0.050 3.950 21 N -0.340 5.340 22 C -0.350 4.350 23 H 0.097 0.903 24 C -0.205 4.205 25 N -0.566 5.566 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.003 3.997 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.224 0.776 35 H 0.208 0.792 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.176 0.824 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.450 -0.383 22.252 23.806 hybrid contribution 0.450 -0.594 -0.733 1.045 sum -8.000 -0.977 21.519 22.979 Atomic orbital electron populations 1.22125 0.96062 1.01444 1.01897 1.20987 0.93103 0.97621 0.83153 0.89436 1.45909 1.68352 1.13515 1.09572 1.17081 0.78184 0.86439 0.81634 1.90861 1.48554 1.14159 1.84054 1.21471 1.16589 0.92957 0.95489 1.23119 0.95872 0.97365 0.88644 1.45887 1.52624 1.11207 1.07149 0.71089 1.77236 1.23288 0.91336 1.18199 1.21296 0.96493 0.91696 0.90399 1.18372 0.98149 0.89454 0.89158 1.22053 1.00373 0.97658 0.96402 1.21453 0.97402 0.92469 0.99942 1.22310 1.01056 1.00693 0.94690 1.22853 0.94894 0.92795 0.95040 1.67939 1.09038 0.99959 1.34382 1.23800 1.00855 0.99472 0.92476 1.22215 0.91217 0.98458 0.83132 1.46011 1.03583 1.82421 1.02000 1.19025 0.89826 1.42673 0.83462 0.90309 1.24817 0.95943 1.02570 0.97152 1.69843 1.04766 1.56059 1.25890 0.86156 0.79090 0.77432 0.83457 1.21660 1.21786 1.20599 1.22493 0.89617 0.96628 0.90968 0.93025 0.92819 0.91705 0.77581 0.79208 0.84667 0.84768 0.84792 0.82411 0.89657 0.95346 0.91640 0.93728 0.93955 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.31 37.16 0.35 -1.80 16 2 C 0.16 2.46 2.38 -67.93 -0.16 2.29 16 3 H 0.09 1.62 7.42 -51.93 -0.39 1.23 16 4 N -0.72 -10.07 5.07 -54.91 -0.28 -10.35 16 5 C 0.58 9.14 7.77 -12.57 -0.10 9.04 16 6 O -0.50 -9.46 13.34 5.27 0.07 -9.39 16 7 C -0.25 -3.37 6.31 -102.95 -0.65 -4.01 16 8 C 0.10 0.90 11.50 -16.63 -0.19 0.71 16 9 N -0.46 -3.92 7.20 30.81 0.22 -3.70 16 10 H 0.44 2.00 8.96 -182.84 -1.64 0.36 16 11 N -0.28 -3.34 12.53 34.57 0.43 -2.91 16 12 C 0.17 2.39 7.11 -80.57 -0.57 1.81 16 13 C 0.19 2.66 6.62 -82.96 -0.55 2.11 16 14 C -0.14 -1.59 9.75 -39.10 -0.38 -1.97 16 15 C -0.09 -0.78 10.16 -39.32 -0.40 -1.18 16 16 C -0.17 -1.55 10.11 -39.37 -0.40 -1.95 16 17 C 0.10 1.26 11.17 -17.58 -0.20 1.07 16 18 N -0.40 -6.29 7.08 -9.79 -0.07 -6.36 16 19 C -0.15 -2.61 3.47 -89.70 -0.31 -2.92 16 20 C 0.18 4.11 6.99 -2.84 -0.02 4.09 16 21 N -0.61 -15.88 3.70 -177.74 -0.66 -16.54 16 22 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 23 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.92 -27.56 11.51 55.49 0.64 -26.92 16 26 Si 0.91 22.36 29.56 -169.99 -5.02 17.33 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 C 0.13 2.63 7.64 -2.97 -0.02 2.60 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 34 H 0.39 4.38 7.56 -40.82 -0.31 4.08 16 35 H 0.19 0.97 7.48 -52.49 -0.39 0.58 16 36 H 0.14 1.28 8.04 -52.49 -0.42 0.86 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.03 0.72 7.99 -51.93 -0.41 0.31 16 42 H 0.07 1.68 7.37 -51.93 -0.38 1.30 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -37.62 381.12 -10.04 -47.66 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.26 Total: 2.34 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -3.86 Total: 3.09 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.29 Total: -66.78 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.62 -10.04 -47.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969819105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.158 kcal (2) G-P(sol) polarization free energy of solvation -37.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds