Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21539 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.47940 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.39504 * 119.59448 * 179.72101 * 7 5 4 9 9 C 1.38229 * 119.18548 * 179.74960 * 8 7 5 10 10 C 1.39785 * 118.39078 * 0.51828 * 9 8 7 11 11 C 1.48264 * 120.43845 * 179.72781 * 10 9 8 12 12 C 1.40955 * 126.24627 * 359.71092 * 11 10 9 13 13 N 1.30634 * 108.06588 * 179.81912 * 12 11 10 14 14 N 1.39998 * 108.56845 * 0.44097 * 13 12 11 15 15 H 0.97002 * 125.86919 * 179.74877 * 14 13 12 16 16 C 1.34713 * 108.26248 * 359.71722 * 14 13 12 17 17 C 1.39739 * 119.11928 * 359.74787 * 10 9 8 18 18 N 1.31303 * 120.73296 * 359.97438 * 17 10 9 19 19 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 20 20 C 1.53953 * 113.74647 * 158.73801 * 19 2 1 21 21 N 1.47803 * 86.03866 * 222.08719 * 20 19 2 22 22 C 1.36940 * 134.45480 * 204.64597 * 21 20 19 23 23 H 1.08004 * 120.00062 * 179.86839 * 22 21 20 24 24 C 1.38806 * 119.99897 * 359.86583 * 22 21 20 25 25 N 1.31618 * 120.00303 * 0.02562 * 24 22 21 26 26 Si 1.86812 * 119.99830 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47087 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46797 * 120.00021 * 26 24 22 29 29 H 1.48495 * 109.46799 * 239.99894 * 26 24 22 30 30 C 1.47580 * 91.05616 * 24.54814 * 21 20 19 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 35 35 H 1.08004 * 120.40415 * 0.02562 * 8 7 5 36 36 H 1.07997 * 120.79975 * 180.26861 * 9 8 7 37 37 H 1.08002 * 125.96712 * 359.96561 * 12 11 10 38 38 H 1.07993 * 126.20643 * 179.97438 * 16 14 13 39 39 H 1.08002 * 119.63111 * 179.97438 * 17 10 9 40 40 H 1.08997 * 112.94423 * 290.33469 * 19 2 1 41 41 H 1.08999 * 113.76379 * 336.35463 * 20 19 2 42 42 H 1.09004 * 113.76409 * 107.74717 * 20 19 2 43 43 H 0.96996 * 120.00162 * 180.02562 * 25 24 22 44 44 H 1.08999 * 113.77170 * 221.15419 * 30 21 20 45 45 H 1.09002 * 113.86789 * 89.76287 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1612 2.4117 7 6 2.6396 -0.7157 3.5652 8 6 2.7751 -0.0101 4.7611 9 6 3.2311 -0.6715 5.8859 10 6 3.5507 -2.0278 5.7757 11 6 4.0496 -2.7800 6.9519 12 6 4.2588 -2.2609 8.2456 13 7 4.6983 -3.2292 9.0045 14 7 4.7964 -4.3921 8.2312 15 1 5.1000 -5.2587 8.5440 16 6 4.3962 -4.1010 6.9783 17 6 3.3942 -2.6653 4.5420 18 7 2.9527 -2.0047 3.4967 19 6 2.0400 -0.7212 -1.2491 20 6 3.4849 -0.3520 -1.6316 21 7 2.9979 -0.3177 -3.0267 22 6 3.5876 -0.4758 -4.2525 23 1 2.9929 -0.4038 -5.1512 24 6 4.9497 -0.7284 -4.3400 25 7 5.6744 -0.8166 -3.2449 26 14 5.7542 -0.9434 -6.0123 27 1 4.7293 -0.7985 -7.0769 28 1 6.8045 0.0908 -6.1928 29 1 6.3685 -2.2927 -6.0961 30 6 1.6214 -0.0472 -2.5684 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 2.5224 1.0389 4.8084 36 1 3.3417 -0.1518 6.8262 37 1 4.0837 -1.2414 8.5560 38 1 4.3568 -4.7874 6.1455 39 1 3.6390 -3.7129 4.4474 40 1 1.8529 -1.7948 -1.2261 41 1 3.8047 0.6191 -1.2539 42 1 4.2071 -1.1448 -1.4365 43 1 6.6262 -0.9927 -3.3061 44 1 0.8587 -0.5970 -3.1199 45 1 1.3910 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969995685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 128.395816 kcal Electronic energy + Delta-G solvation = -27954.557713 eV Core-core repulsion = 23975.505780 eV Total energy + Delta-G solvation = -3979.051933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77535 -40.51869 -39.14199 -37.86951 -34.77537 -33.77954 -32.22118 -32.14842 -31.85920 -30.49102 -28.99548 -27.46438 -25.20441 -24.49312 -24.24036 -23.76524 -22.02687 -21.69844 -20.78908 -20.26596 -19.27753 -18.68909 -17.69730 -16.76702 -16.59385 -15.67834 -15.58218 -15.30243 -15.27918 -14.96288 -14.85069 -14.72914 -14.05945 -13.81615 -13.69165 -13.63235 -13.41337 -13.15594 -12.92503 -12.42945 -12.27895 -12.04881 -11.60092 -11.38503 -11.28545 -11.23490 -10.88392 -10.70074 -10.67361 -10.29925 -10.23973 -10.18673 -9.87331 -9.81972 -9.68979 -9.55747 -9.34096 -8.75616 -8.73947 -8.34569 -6.81932 -5.71728 -3.03862 0.27348 1.04819 1.41144 2.22356 2.31700 2.98344 3.28668 3.41577 3.46672 3.49358 3.86032 3.98455 4.14025 4.28167 4.49147 4.53164 4.57273 4.74245 4.84482 4.96294 5.08621 5.16838 5.33837 5.36351 5.39753 5.51631 5.58895 5.72124 5.78331 5.87721 5.89960 5.99911 6.02537 6.10301 6.30087 6.36600 6.42193 6.46967 6.65141 6.65241 6.72998 6.87577 7.06016 7.30370 7.43325 7.51566 7.62594 7.84997 8.03289 8.39605 9.09579 9.75836 10.65782 11.45319 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.002139 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.469427 B =13087.608296 C =14489.534424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.088 0.912 4 N -0.695 5.695 5 C 0.569 3.431 6 O -0.541 6.541 7 C 0.072 3.928 8 C -0.101 4.101 9 C -0.086 4.086 10 C -0.026 4.026 11 C -0.204 4.204 12 C 0.072 3.928 13 N -0.293 5.293 14 N -0.470 5.470 15 H 0.444 0.556 16 C 0.085 3.915 17 C 0.097 3.903 18 N -0.447 5.447 19 C -0.146 4.146 20 C 0.171 3.829 21 N -0.613 5.613 22 C -0.221 4.221 23 H 0.080 0.920 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.130 3.870 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.410 0.590 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.188 0.812 38 H 0.185 0.815 39 H 0.159 0.841 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.252 0.748 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 -6.947 24.560 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.106 0.894 4 N -0.345 5.345 5 C 0.354 3.646 6 O -0.418 6.418 7 C -0.066 4.066 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.030 4.030 11 C -0.216 4.216 12 C -0.116 4.116 13 N -0.114 5.114 14 N -0.176 5.176 15 H 0.288 0.712 16 C -0.064 4.064 17 C -0.065 4.065 18 N -0.157 5.157 19 C -0.166 4.166 20 C 0.046 3.954 21 N -0.339 5.339 22 C -0.348 4.348 23 H 0.098 0.902 24 C -0.206 4.206 25 N -0.568 5.568 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.004 3.996 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.246 0.754 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.205 0.795 38 H 0.202 0.798 39 H 0.176 0.824 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.732 -6.885 24.680 26.255 hybrid contribution 0.751 -0.316 -0.766 1.118 sum -4.981 -7.202 23.914 25.466 Atomic orbital electron populations 1.22131 0.95579 1.01824 1.02088 1.21158 0.93554 0.97611 0.83306 0.89367 1.45949 1.64855 1.14751 1.08918 1.17803 0.78024 0.86043 0.82776 1.90773 1.51118 1.15071 1.84820 1.21230 1.00446 0.90429 0.94487 1.22042 0.96474 1.01955 0.91714 1.21484 0.97447 0.93237 0.98995 1.19222 0.97282 0.93587 0.92891 1.18777 1.15047 0.93378 0.94412 1.24055 0.97274 0.99237 0.91024 1.77275 1.23282 0.91859 1.18958 1.46256 1.52258 1.11790 1.07312 0.71199 1.22746 0.97328 0.97036 0.89333 1.22715 0.96759 0.99935 0.87061 1.67493 1.08706 1.07956 1.31529 1.23815 1.00908 0.99732 0.92154 1.22293 0.91444 0.98503 0.83188 1.46006 1.03322 1.82570 1.02030 1.19073 0.91427 1.41345 0.83006 0.90241 1.24787 0.96083 1.02532 0.97216 1.69833 1.05979 1.55334 1.25648 0.86061 0.79310 0.77337 0.83156 1.20484 1.21810 1.21758 1.22492 0.89623 0.96614 0.90897 0.92672 0.91352 0.92768 0.75429 0.83269 0.84184 0.79471 0.79763 0.82411 0.89316 0.95638 0.91004 0.93769 0.93771 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.31 37.16 0.35 -1.83 16 2 C 0.15 2.39 2.38 -67.94 -0.16 2.23 16 3 H 0.09 1.61 7.41 -51.93 -0.39 1.23 16 4 N -0.70 -10.53 5.07 -54.73 -0.28 -10.81 16 5 C 0.57 8.92 7.77 -12.29 -0.10 8.83 16 6 O -0.54 -9.79 15.97 5.33 0.09 -9.70 16 7 C 0.07 0.95 6.75 -82.99 -0.56 0.39 16 8 C -0.10 -1.10 9.61 -39.11 -0.38 -1.48 16 9 C -0.09 -0.72 9.68 -39.01 -0.38 -1.10 16 10 C -0.03 -0.22 5.90 -104.64 -0.62 -0.84 16 11 C -0.20 -1.43 6.05 -105.34 -0.64 -2.07 16 12 C 0.07 0.51 11.45 -17.03 -0.19 0.31 16 13 N -0.29 -2.35 12.66 30.82 0.39 -1.96 16 14 N -0.47 -2.46 7.32 30.65 0.22 -2.24 16 15 H 0.44 0.92 8.96 -182.67 -1.64 -0.72 16 16 C 0.08 0.43 11.40 -16.88 -0.19 0.23 16 17 C 0.10 0.89 10.73 -17.22 -0.18 0.70 16 18 N -0.45 -5.41 9.51 -9.55 -0.09 -5.50 16 19 C -0.15 -2.70 3.47 -89.69 -0.31 -3.01 16 20 C 0.17 4.09 7.08 -2.84 -0.02 4.07 16 21 N -0.61 -16.00 3.70 -177.68 -0.66 -16.66 16 22 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 23 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.92 -27.79 11.39 55.49 0.63 -27.16 16 26 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 C 0.13 2.66 7.64 -2.96 -0.02 2.64 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 5.79 7.92 -40.82 -0.32 5.47 16 35 H 0.15 1.55 7.63 -52.48 -0.40 1.15 16 36 H 0.14 0.75 7.16 -52.49 -0.38 0.37 16 37 H 0.19 0.83 7.41 -52.49 -0.39 0.44 16 38 H 0.19 0.30 7.30 -52.49 -0.38 -0.08 16 39 H 0.16 0.94 7.03 -52.49 -0.37 0.57 16 40 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 42 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -36.77 382.23 -9.72 -46.49 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.10 Total: 2.10 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.66 Total: 2.23 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.22 Total: -64.32 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.77 -9.72 -46.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969995685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.889 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds