Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21539 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.47940 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.39504 * 119.59448 * 179.72101 * 7 5 4 9 9 C 1.38229 * 119.18548 * 179.74960 * 8 7 5 10 10 C 1.39785 * 118.39078 * 0.51828 * 9 8 7 11 11 C 1.48264 * 120.43845 * 179.72781 * 10 9 8 12 12 C 1.40955 * 126.24627 * 359.71092 * 11 10 9 13 13 N 1.30634 * 108.06588 * 179.81912 * 12 11 10 14 14 N 1.39998 * 108.56845 * 0.44097 * 13 12 11 15 15 H 0.97002 * 125.86919 * 179.74877 * 14 13 12 16 16 C 1.34713 * 108.26248 * 359.71722 * 14 13 12 17 17 C 1.39739 * 119.11928 * 359.74787 * 10 9 8 18 18 N 1.31303 * 120.73296 * 359.97438 * 17 10 9 19 19 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 20 20 C 1.53953 * 113.74647 * 158.73801 * 19 2 1 21 21 N 1.47803 * 86.03866 * 222.08719 * 20 19 2 22 22 C 1.36940 * 134.45480 * 204.64597 * 21 20 19 23 23 H 1.08004 * 120.00062 * 179.86839 * 22 21 20 24 24 C 1.38806 * 119.99897 * 359.86583 * 22 21 20 25 25 N 1.31618 * 120.00303 * 0.02562 * 24 22 21 26 26 Si 1.86812 * 119.99830 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47087 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46797 * 120.00021 * 26 24 22 29 29 H 1.48495 * 109.46799 * 239.99894 * 26 24 22 30 30 C 1.47580 * 91.05616 * 24.54814 * 21 20 19 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 35 35 H 1.08004 * 120.40415 * 0.02562 * 8 7 5 36 36 H 1.07997 * 120.79975 * 180.26861 * 9 8 7 37 37 H 1.08002 * 125.96712 * 359.96561 * 12 11 10 38 38 H 1.07993 * 126.20643 * 179.97438 * 16 14 13 39 39 H 1.08002 * 119.63111 * 179.97438 * 17 10 9 40 40 H 1.08997 * 112.94423 * 290.33469 * 19 2 1 41 41 H 1.08999 * 113.76379 * 336.35463 * 20 19 2 42 42 H 1.09004 * 113.76409 * 107.74717 * 20 19 2 43 43 H 0.96996 * 120.00162 * 180.02562 * 25 24 22 44 44 H 1.08999 * 113.77170 * 221.15419 * 30 21 20 45 45 H 1.09002 * 113.86789 * 89.76287 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1612 2.4117 7 6 2.6396 -0.7157 3.5652 8 6 2.7751 -0.0101 4.7611 9 6 3.2311 -0.6715 5.8859 10 6 3.5507 -2.0278 5.7757 11 6 4.0496 -2.7800 6.9519 12 6 4.2588 -2.2609 8.2456 13 7 4.6983 -3.2292 9.0045 14 7 4.7964 -4.3921 8.2312 15 1 5.1000 -5.2587 8.5440 16 6 4.3962 -4.1010 6.9783 17 6 3.3942 -2.6653 4.5420 18 7 2.9527 -2.0047 3.4967 19 6 2.0400 -0.7212 -1.2491 20 6 3.4849 -0.3520 -1.6316 21 7 2.9979 -0.3177 -3.0267 22 6 3.5876 -0.4758 -4.2525 23 1 2.9929 -0.4038 -5.1512 24 6 4.9497 -0.7284 -4.3400 25 7 5.6744 -0.8166 -3.2449 26 14 5.7542 -0.9434 -6.0123 27 1 4.7293 -0.7985 -7.0769 28 1 6.8045 0.0908 -6.1928 29 1 6.3685 -2.2927 -6.0961 30 6 1.6214 -0.0472 -2.5684 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 2.2490 -1.6317 1.1527 35 1 2.5224 1.0389 4.8084 36 1 3.3417 -0.1518 6.8262 37 1 4.0837 -1.2414 8.5560 38 1 4.3568 -4.7874 6.1455 39 1 3.6390 -3.7129 4.4474 40 1 1.8529 -1.7948 -1.2261 41 1 3.8047 0.6191 -1.2539 42 1 4.2071 -1.1448 -1.4365 43 1 6.6262 -0.9927 -3.3061 44 1 0.8587 -0.5970 -3.1199 45 1 1.3910 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969995685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = 101.957492 kcal Electronic energy + Delta-G solvation = -27955.704164 eV Core-core repulsion = 23975.505780 eV Total energy + Delta-G solvation = -3980.198385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27302 -41.46101 -40.36649 -39.38069 -36.20512 -34.54985 -34.07162 -32.96778 -32.39154 -31.76375 -29.74957 -29.30330 -26.68228 -25.84231 -25.30177 -24.90048 -23.07622 -22.55320 -21.66200 -21.26398 -20.79599 -19.19217 -18.89368 -18.67825 -17.67635 -16.91647 -16.78803 -16.26701 -16.17698 -16.10006 -15.71707 -15.66596 -15.45897 -15.05373 -14.79257 -14.69501 -14.40984 -14.22490 -14.03539 -13.74258 -13.40366 -13.24732 -13.07786 -12.99691 -12.90328 -12.69623 -12.51623 -11.96351 -11.88031 -11.73942 -11.50279 -11.35683 -11.30520 -11.14653 -10.87190 -10.71816 -10.57222 -10.46651 -10.02283 -8.94977 -8.90938 -7.89175 -5.23139 -0.49387 0.33573 0.94833 1.45360 1.47037 1.51306 1.57311 1.97978 2.09332 2.16696 2.48064 3.02454 3.18035 3.31598 3.39914 3.56025 3.74195 3.80697 3.90529 3.95895 3.99426 4.10050 4.28333 4.31268 4.32285 4.50599 4.57891 4.60553 4.76090 4.79755 4.84288 4.85752 4.88376 5.01878 5.06934 5.15100 5.25989 5.27376 5.35211 5.48902 5.49749 5.57328 5.65880 5.68632 5.94480 6.34871 6.49110 6.62437 6.87649 6.92546 7.22032 7.61880 8.58057 9.27900 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.002139 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.469427 B =13087.608296 C =14489.534424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.063 0.937 4 N -0.694 5.694 5 C 0.566 3.434 6 O -0.575 6.575 7 C 0.038 3.962 8 C -0.105 4.105 9 C -0.086 4.086 10 C -0.008 4.008 11 C -0.231 4.231 12 C 0.069 3.931 13 N -0.329 5.329 14 N -0.463 5.463 15 H 0.456 0.544 16 C 0.105 3.895 17 C 0.089 3.911 18 N -0.464 5.464 19 C -0.110 4.110 20 C 0.168 3.832 21 N -0.644 5.644 22 C -0.233 4.233 23 H 0.086 0.914 24 C -0.072 4.072 25 N -0.955 5.955 26 Si 0.980 3.020 27 H -0.263 1.263 28 H -0.295 1.295 29 H -0.290 1.290 30 C 0.132 3.868 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.415 0.585 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.206 0.794 38 H 0.221 0.779 39 H 0.191 0.809 40 H 0.102 0.898 41 H 0.003 0.997 42 H 0.040 0.960 43 H 0.247 0.753 44 H 0.067 0.933 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 -8.730 25.380 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.081 0.919 4 N -0.344 5.344 5 C 0.352 3.648 6 O -0.455 6.455 7 C -0.098 4.098 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.011 4.011 11 C -0.243 4.243 12 C -0.118 4.118 13 N -0.150 5.150 14 N -0.170 5.170 15 H 0.304 0.696 16 C -0.045 4.045 17 C -0.073 4.073 18 N -0.175 5.175 19 C -0.130 4.130 20 C 0.043 3.957 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.104 0.896 24 C -0.265 4.265 25 N -0.605 5.605 26 Si 0.809 3.191 27 H -0.187 1.187 28 H -0.223 1.223 29 H -0.217 1.217 30 C 0.007 3.993 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.252 0.748 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.222 0.778 38 H 0.238 0.762 39 H 0.208 0.792 40 H 0.121 0.879 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.619 -8.684 25.517 27.755 hybrid contribution 1.058 0.150 -0.874 1.380 sum -5.561 -8.534 24.643 26.665 Atomic orbital electron populations 1.22044 0.93028 1.03092 1.02471 1.20931 0.95327 0.95876 0.82719 0.91877 1.45888 1.64941 1.14902 1.08630 1.18243 0.77246 0.85772 0.83512 1.90734 1.52734 1.16490 1.85502 1.20903 1.03515 0.91375 0.94040 1.22104 0.96663 1.01942 0.91878 1.21804 0.96526 0.93543 0.99273 1.19370 0.95238 0.93482 0.93032 1.18793 1.17167 0.94350 0.93978 1.24433 0.96390 1.00010 0.90975 1.77245 1.24677 0.92890 1.20208 1.46343 1.51499 1.11909 1.07273 0.69650 1.23328 0.94510 0.96852 0.89844 1.23278 0.96089 1.01232 0.86667 1.67420 1.09473 1.07575 1.33008 1.23440 0.96316 1.00481 0.92729 1.22156 0.94017 0.96347 0.83220 1.46435 1.05898 1.82830 1.01907 1.19512 0.91947 1.40255 0.84408 0.89587 1.25683 0.96835 1.03073 1.00892 1.70038 1.05775 1.56849 1.27800 0.84978 0.78192 0.76762 0.79211 1.18724 1.22259 1.21682 1.22682 0.87623 0.97627 0.91398 0.90913 0.90325 0.93033 0.74816 0.83578 0.81196 0.77770 0.76224 0.79205 0.87946 0.97952 0.94184 0.94393 0.91523 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.31 71.98 0.67 -3.19 16 2 C 0.16 5.06 2.38 44.99 0.11 5.16 16 3 H 0.06 2.38 7.41 -2.39 -0.02 2.37 16 4 N -0.69 -21.40 5.07 -445.34 -2.26 -23.65 16 5 C 0.57 18.38 7.77 86.81 0.67 19.05 16 6 O -0.57 -21.75 15.97 -3.84 -0.06 -21.81 16 7 C 0.04 1.02 6.75 41.87 0.28 1.30 16 8 C -0.10 -2.29 9.61 22.57 0.22 -2.07 16 9 C -0.09 -1.31 9.68 22.64 0.22 -1.10 16 10 C -0.01 -0.11 5.90 -19.87 -0.12 -0.23 16 11 C -0.23 -2.62 6.05 -20.33 -0.12 -2.74 16 12 C 0.07 0.83 11.45 85.54 0.98 1.81 16 13 N -0.33 -4.64 12.66 -56.40 -0.71 -5.36 16 14 N -0.46 -3.62 7.32 -56.96 -0.42 -4.03 16 15 H 0.46 0.71 8.96 -213.38 -1.91 -1.21 16 16 C 0.11 0.70 11.40 83.87 0.96 1.65 16 17 C 0.09 1.46 10.73 85.13 0.91 2.37 16 18 N -0.46 -10.99 9.51 -184.11 -1.75 -12.74 16 19 C -0.11 -4.03 3.47 -10.13 -0.04 -4.07 16 20 C 0.17 8.35 7.08 86.45 0.61 8.96 16 21 N -0.64 -33.97 3.70 -716.07 -2.65 -36.62 16 22 C -0.23 -13.38 10.70 84.03 0.90 -12.48 16 23 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.96 -59.47 11.39 21.65 0.25 -59.23 16 26 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 30 C 0.13 5.24 7.64 86.49 0.66 5.90 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.88 7.52 -2.39 -0.02 1.87 16 33 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.41 11.81 7.92 -92.70 -0.73 11.08 16 35 H 0.15 3.16 7.63 -2.91 -0.02 3.14 16 36 H 0.17 1.44 7.16 -2.91 -0.02 1.42 16 37 H 0.21 1.37 7.41 -2.91 -0.02 1.35 16 38 H 0.22 -0.31 7.30 -2.91 -0.02 -0.33 16 39 H 0.19 1.64 7.03 -2.91 -0.02 1.61 16 40 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.00 0.14 7.99 -2.39 -0.02 0.12 16 42 H 0.04 2.22 7.16 -2.38 -0.02 2.20 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -82.71 382.23 0.21 -82.50 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -1.59 Total: 15.66 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 7.38 Total: 16.57 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -7.54 Total: -141.62 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -82.71 0.21 -82.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969995685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.453 kcal (2) G-P(sol) polarization free energy of solvation -82.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds