Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21547 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.47940 * 120.00023 * 180.02562 * 5 4 2 8 8 C 1.39495 * 119.59445 * 180.02562 * 7 5 4 9 9 C 1.38233 * 119.18603 * 180.02562 * 8 7 5 10 10 C 1.39789 * 118.38990 * 359.97438 * 9 8 7 11 11 C 1.48260 * 120.43714 * 180.02562 * 10 9 8 12 12 C 1.40948 * 126.24995 * 359.68443 * 11 10 9 13 13 N 1.30637 * 108.07108 * 179.85356 * 12 11 10 14 14 N 1.40003 * 108.56463 * 0.41107 * 13 12 11 15 15 H 0.96995 * 125.86699 * 179.73532 * 14 13 12 16 16 C 1.34717 * 108.26193 * 359.73535 * 14 13 12 17 17 C 1.39746 * 119.11962 * 0.02562 * 10 9 8 18 18 N 1.31304 * 120.73142 * 359.71771 * 17 10 9 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 33 33 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.07996 * 120.40987 * 359.97300 * 8 7 5 36 36 H 1.08003 * 120.80211 * 179.97438 * 9 8 7 37 37 H 1.07996 * 125.96321 * 359.97438 * 12 11 10 38 38 H 1.07996 * 126.20025 * 180.02562 * 16 14 13 39 39 H 1.08000 * 119.63326 * 180.02562 * 17 10 9 40 40 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 44 44 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 45 45 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1611 -2.4116 7 6 2.6398 -0.7158 -3.5651 8 6 2.7701 -0.0117 -4.7622 9 6 3.2308 -0.6719 -5.8860 10 6 3.5500 -2.0284 -5.7757 11 6 4.0485 -2.7807 -6.9520 12 6 4.2463 -2.2646 -8.2487 13 7 4.6961 -3.2303 -9.0048 14 7 4.7938 -4.3933 -8.2316 15 1 5.0972 -5.2599 -8.5443 16 6 4.3941 -4.1019 -6.9785 17 6 3.3930 -2.6659 -4.5421 18 7 2.9573 -2.0038 -3.4953 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 2.5136 1.0363 -4.8107 36 1 3.3413 -0.1522 -6.8263 37 1 4.0604 -1.2479 -8.5618 38 1 4.3547 -4.7884 -6.1457 39 1 3.6376 -3.7136 -4.4475 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969995686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = 136.546996 kcal Electronic energy + Delta-G solvation = -28080.613941 eV Core-core repulsion = 24101.915469 eV Total energy + Delta-G solvation = -3978.698471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85035 -40.65178 -39.41943 -38.32831 -35.03702 -33.88624 -32.38590 -32.32536 -31.95037 -30.76542 -29.12576 -27.70672 -25.53863 -24.87105 -24.34159 -23.63501 -22.10676 -21.58308 -20.82085 -20.42411 -19.52769 -18.77177 -17.95722 -17.43753 -16.80517 -15.91597 -15.69368 -15.45630 -15.37466 -15.19660 -15.09043 -14.88072 -14.22226 -13.98743 -13.77336 -13.70213 -13.58856 -13.26900 -13.12489 -12.89882 -12.42125 -12.25402 -11.85795 -11.78397 -11.47124 -11.45381 -10.90459 -10.77827 -10.62186 -10.36089 -10.31158 -10.30909 -10.16640 -9.92285 -9.69488 -9.21457 -9.09772 -8.88137 -8.86182 -8.44238 -7.12577 -6.26228 -3.19916 0.16595 0.94127 1.33922 2.13128 2.25020 2.85708 3.11983 3.44414 3.48877 3.68127 3.73757 3.87816 4.04324 4.20174 4.43643 4.47494 4.61338 4.62990 4.75432 4.76053 4.88197 4.95184 5.00063 5.14857 5.30281 5.41190 5.48155 5.52360 5.61820 5.69420 5.79895 5.80746 5.91899 5.92901 6.05424 6.20529 6.25823 6.28119 6.31839 6.35667 6.43908 6.58401 6.64240 6.96177 6.99215 7.16169 7.37741 7.68740 8.23005 8.26672 9.00885 9.53435 10.40584 11.23737 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.002315 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.379816 B =12091.502823 C =13336.120495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.091 0.909 4 N -0.699 5.699 5 C 0.570 3.430 6 O -0.538 6.538 7 C 0.069 3.931 8 C -0.100 4.100 9 C -0.086 4.086 10 C -0.024 4.024 11 C -0.206 4.206 12 C 0.072 3.928 13 N -0.292 5.292 14 N -0.469 5.469 15 H 0.444 0.556 16 C 0.086 3.914 17 C 0.096 3.904 18 N -0.448 5.448 19 C -0.139 4.139 20 C 0.134 3.866 21 N -0.629 5.629 22 C -0.302 4.302 23 H 0.083 0.917 24 C -0.026 4.026 25 N -0.935 5.935 26 Si 1.070 2.930 27 H -0.296 1.296 28 H -0.293 1.293 29 H -0.287 1.287 30 C 0.103 3.897 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.410 0.590 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.189 0.811 38 H 0.185 0.815 39 H 0.159 0.841 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 -6.766 -30.485 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.109 0.891 4 N -0.349 5.349 5 C 0.354 3.646 6 O -0.415 6.415 7 C -0.069 4.069 8 C -0.120 4.120 9 C -0.112 4.112 10 C -0.027 4.027 11 C -0.218 4.218 12 C -0.116 4.116 13 N -0.113 5.113 14 N -0.176 5.176 15 H 0.288 0.712 16 C -0.064 4.064 17 C -0.065 4.065 18 N -0.158 5.158 19 C -0.159 4.159 20 C 0.007 3.993 21 N -0.357 5.357 22 C -0.428 4.428 23 H 0.100 0.900 24 C -0.224 4.224 25 N -0.577 5.577 26 Si 0.903 3.097 27 H -0.223 1.223 28 H -0.221 1.221 29 H -0.214 1.214 30 C -0.023 4.023 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.246 0.754 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.205 0.795 38 H 0.202 0.798 39 H 0.176 0.824 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.290 -6.780 -31.069 32.088 hybrid contribution -1.453 -0.155 0.428 1.522 sum -5.743 -6.936 -30.641 31.937 Atomic orbital electron populations 1.22118 0.95062 1.02078 1.02355 1.21086 0.94035 0.97497 0.82876 0.89094 1.45972 1.65205 1.14784 1.08981 1.17818 0.77960 0.86052 0.82731 1.90785 1.50879 1.15034 1.84768 1.21189 1.00732 0.90503 0.94443 1.22041 0.96352 1.01967 0.91688 1.21501 0.97366 0.93251 0.99041 1.19231 0.97037 0.93566 0.92895 1.18769 1.15259 0.93444 0.94311 1.24056 0.97200 0.99303 0.90992 1.77289 1.23063 0.91935 1.18992 1.46268 1.52192 1.11766 1.07330 0.71157 1.22750 0.97327 0.96958 0.89322 1.22719 0.96831 0.99929 0.87044 1.67484 1.08775 1.07890 1.31672 1.23557 0.99004 1.00371 0.92970 1.22260 0.90034 0.97146 0.89822 1.45968 1.04099 1.83731 1.01923 1.20154 0.92125 1.47474 0.83069 0.89958 1.25713 0.94252 0.99334 1.03148 1.70914 1.37272 1.52389 0.97167 0.83718 0.75661 0.76291 0.74065 1.22302 1.22105 1.21402 1.22833 0.94840 0.98487 0.86109 0.92484 0.91176 0.92503 0.75398 0.83228 0.84102 0.79453 0.79760 0.82360 0.88301 0.93505 0.94283 0.92983 0.93751 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.29 37.16 0.35 -1.65 16 2 C 0.15 2.19 2.47 -67.93 -0.17 2.03 16 3 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 4 N -0.70 -9.58 5.07 -54.72 -0.28 -9.86 16 5 C 0.57 8.18 7.77 -12.28 -0.10 8.08 16 6 O -0.54 -9.03 15.97 5.32 0.09 -8.94 16 7 C 0.07 0.83 6.75 -82.99 -0.56 0.27 16 8 C -0.10 -0.98 9.61 -39.11 -0.38 -1.36 16 9 C -0.09 -0.64 9.68 -39.00 -0.38 -1.02 16 10 C -0.02 -0.18 5.90 -104.63 -0.62 -0.79 16 11 C -0.21 -1.30 6.05 -105.34 -0.64 -1.93 16 12 C 0.07 0.46 11.45 -17.03 -0.20 0.27 16 13 N -0.29 -2.18 12.66 30.82 0.39 -1.78 16 14 N -0.47 -2.19 7.32 30.65 0.22 -1.96 16 15 H 0.44 0.68 8.96 -182.68 -1.64 -0.95 16 16 C 0.09 0.37 11.40 -16.88 -0.19 0.18 16 17 C 0.10 0.79 10.73 -17.21 -0.18 0.60 16 18 N -0.45 -4.91 9.51 -9.54 -0.09 -5.00 16 19 C -0.14 -2.35 3.67 -89.96 -0.33 -2.68 16 20 C 0.13 2.62 7.33 -8.50 -0.06 2.55 16 21 N -0.63 -15.73 3.69 -184.57 -0.68 -16.41 16 22 C -0.30 -8.87 11.08 -15.06 -0.17 -9.03 16 23 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 24 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 25 N -0.94 -30.00 13.70 55.49 0.76 -29.24 16 26 Si 1.07 27.57 25.16 -169.99 -4.28 23.29 16 27 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 28 H -0.29 -7.10 6.51 56.52 0.37 -6.73 16 29 H -0.29 -7.02 6.21 56.52 0.35 -6.67 16 30 C 0.10 2.21 5.27 -8.36 -0.04 2.17 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 5.14 7.92 -40.82 -0.32 4.81 16 35 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 36 H 0.14 0.64 7.16 -52.48 -0.38 0.27 16 37 H 0.19 0.71 7.41 -52.49 -0.39 0.32 16 38 H 0.19 0.17 7.30 -52.49 -0.38 -0.21 16 39 H 0.16 0.80 7.03 -52.49 -0.37 0.43 16 40 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 44 H 0.04 0.97 7.44 -51.93 -0.39 0.59 16 45 H 0.05 1.15 4.73 -51.93 -0.25 0.91 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -37.98 374.72 -9.03 -47.00 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.05 Total: 0.47 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.76 Total: -3.20 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.33 Total: -64.27 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 27.57 SS G_CDS: -4.28 Total: 23.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.98 -9.03 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969995686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.552 kcal (2) G-P(sol) polarization free energy of solvation -37.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds