Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21547 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.47940 * 120.00023 * 180.02562 * 5 4 2 8 8 C 1.39495 * 119.59445 * 180.02562 * 7 5 4 9 9 C 1.38233 * 119.18603 * 180.02562 * 8 7 5 10 10 C 1.39789 * 118.38990 * 359.97438 * 9 8 7 11 11 C 1.48260 * 120.43714 * 180.02562 * 10 9 8 12 12 C 1.40948 * 126.24995 * 359.68443 * 11 10 9 13 13 N 1.30637 * 108.07108 * 179.85356 * 12 11 10 14 14 N 1.40003 * 108.56463 * 0.41107 * 13 12 11 15 15 H 0.96995 * 125.86699 * 179.73532 * 14 13 12 16 16 C 1.34717 * 108.26193 * 359.73535 * 14 13 12 17 17 C 1.39746 * 119.11962 * 0.02562 * 10 9 8 18 18 N 1.31304 * 120.73142 * 359.71771 * 17 10 9 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 33 33 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.07996 * 120.40987 * 359.97300 * 8 7 5 36 36 H 1.08003 * 120.80211 * 179.97438 * 9 8 7 37 37 H 1.07996 * 125.96321 * 359.97438 * 12 11 10 38 38 H 1.07996 * 126.20025 * 180.02562 * 16 14 13 39 39 H 1.08000 * 119.63326 * 180.02562 * 17 10 9 40 40 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 44 44 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 45 45 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1611 -2.4116 7 6 2.6398 -0.7158 -3.5651 8 6 2.7701 -0.0117 -4.7622 9 6 3.2308 -0.6719 -5.8860 10 6 3.5500 -2.0284 -5.7757 11 6 4.0485 -2.7807 -6.9520 12 6 4.2463 -2.2646 -8.2487 13 7 4.6961 -3.2303 -9.0048 14 7 4.7938 -4.3933 -8.2316 15 1 5.0972 -5.2599 -8.5443 16 6 4.3941 -4.1019 -6.9785 17 6 3.3930 -2.6659 -4.5421 18 7 2.9573 -2.0038 -3.4953 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 2.5136 1.0363 -4.8107 36 1 3.3413 -0.1522 -6.8263 37 1 4.0604 -1.2479 -8.5618 38 1 4.3547 -4.7884 -6.1457 39 1 3.6376 -3.7136 -4.4475 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969995686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 107.574975 kcal Electronic energy + Delta-G solvation = -28081.870262 eV Core-core repulsion = 24101.915469 eV Total energy + Delta-G solvation = -3979.954792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27508 -41.51052 -40.62960 -39.59572 -36.33312 -34.65385 -34.34996 -32.96965 -32.41144 -31.93584 -29.83160 -29.39788 -27.08129 -25.87579 -25.07745 -24.88565 -22.92067 -22.55671 -21.67994 -21.31911 -20.99582 -19.55262 -19.20554 -18.94661 -17.75033 -17.20618 -16.77705 -16.29069 -16.22537 -16.13723 -15.86047 -15.65854 -15.53621 -15.17961 -15.10890 -14.77693 -14.58494 -14.26280 -14.17206 -13.76394 -13.65458 -13.28427 -13.21835 -13.12009 -12.99142 -12.52200 -12.36278 -12.12145 -11.87887 -11.71415 -11.37358 -11.35798 -11.21038 -11.09423 -10.84413 -10.72267 -10.57186 -10.48292 -10.06484 -9.23003 -8.95220 -8.61811 -5.47859 -0.49794 0.33155 0.94813 1.36886 1.46349 1.50543 1.65148 1.97890 2.08384 2.12492 2.51844 2.98118 3.02142 3.15763 3.18434 3.48426 3.56936 3.78975 3.86319 3.90266 3.97826 4.09801 4.21333 4.28104 4.31413 4.39108 4.45886 4.57925 4.58749 4.66680 4.69332 4.79360 4.81632 4.85531 4.88563 5.01415 5.12624 5.19810 5.26327 5.30997 5.41499 5.49119 5.56009 5.66390 5.94656 6.34780 6.46795 6.62269 6.69574 6.86271 7.20225 7.32078 8.27453 8.89755 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.002315 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.379816 B =12091.502823 C =13336.120495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.073 0.927 4 N -0.696 5.696 5 C 0.568 3.432 6 O -0.572 6.572 7 C 0.038 3.962 8 C -0.104 4.104 9 C -0.087 4.087 10 C -0.007 4.007 11 C -0.231 4.231 12 C 0.069 3.931 13 N -0.330 5.330 14 N -0.464 5.464 15 H 0.456 0.544 16 C 0.106 3.894 17 C 0.090 3.910 18 N -0.463 5.463 19 C -0.104 4.104 20 C 0.132 3.868 21 N -0.662 5.662 22 C -0.288 4.288 23 H 0.054 0.946 24 C -0.086 4.086 25 N -0.971 5.971 26 Si 1.108 2.892 27 H -0.304 1.304 28 H -0.268 1.268 29 H -0.271 1.271 30 C 0.093 3.907 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.417 0.583 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.205 0.795 38 H 0.222 0.778 39 H 0.192 0.808 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.247 0.753 44 H 0.043 0.957 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -8.408 -33.803 35.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 H 0.091 0.909 4 N -0.347 5.347 5 C 0.354 3.646 6 O -0.451 6.451 7 C -0.099 4.099 8 C -0.125 4.125 9 C -0.112 4.112 10 C -0.011 4.011 11 C -0.243 4.243 12 C -0.119 4.119 13 N -0.151 5.151 14 N -0.171 5.171 15 H 0.303 0.697 16 C -0.045 4.045 17 C -0.072 4.072 18 N -0.173 5.173 19 C -0.124 4.124 20 C 0.006 3.994 21 N -0.390 5.390 22 C -0.416 4.416 23 H 0.072 0.928 24 C -0.278 4.278 25 N -0.616 5.616 26 Si 0.935 3.065 27 H -0.232 1.232 28 H -0.194 1.194 29 H -0.196 1.196 30 C -0.032 4.032 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.164 0.836 36 H 0.186 0.814 37 H 0.222 0.778 38 H 0.239 0.761 39 H 0.208 0.792 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.749 -8.442 -34.437 35.774 hybrid contribution -1.385 0.270 1.355 1.956 sum -6.135 -8.172 -33.083 34.625 Atomic orbital electron populations 1.22052 0.93129 1.03168 1.02528 1.20873 0.95382 0.96179 0.82304 0.90887 1.45888 1.65192 1.15009 1.08569 1.18204 0.77204 0.85751 0.83415 1.90754 1.52468 1.16480 1.85410 1.20892 1.03541 0.91404 0.94013 1.22099 0.96581 1.01952 0.91893 1.21805 0.96528 0.93573 0.99327 1.19368 0.95200 0.93457 0.93051 1.18800 1.17250 0.94391 0.93888 1.24433 0.96350 1.00027 0.91041 1.77256 1.24531 0.93013 1.20322 1.46355 1.51513 1.11851 1.07354 0.69675 1.23345 0.94556 0.96809 0.89799 1.23272 0.96109 1.01209 0.86612 1.67425 1.09461 1.07460 1.33000 1.23250 0.95142 1.01177 0.92786 1.22482 0.87948 0.98250 0.90695 1.46109 1.07010 1.84166 1.01739 1.20050 0.91954 1.45209 0.84377 0.92837 1.26983 0.96221 0.99844 1.04753 1.71007 1.37373 1.55635 0.97609 0.83257 0.73557 0.77983 0.71751 1.23180 1.19426 1.19636 1.23017 0.97323 0.98466 0.84361 0.90920 0.90532 0.92831 0.74593 0.83577 0.81372 0.77821 0.76150 0.79169 0.86670 0.92346 0.93033 0.94424 0.93903 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.29 71.98 0.67 -2.78 16 2 C 0.16 4.33 2.47 44.99 0.11 4.44 16 3 H 0.07 2.32 7.32 -2.39 -0.02 2.30 16 4 N -0.70 -17.99 5.07 -445.31 -2.26 -20.24 16 5 C 0.57 15.92 7.77 86.81 0.67 16.60 16 6 O -0.57 -19.22 15.97 -3.86 -0.06 -19.28 16 7 C 0.04 0.87 6.75 41.87 0.28 1.16 16 8 C -0.10 -1.96 9.61 22.57 0.22 -1.74 16 9 C -0.09 -1.11 9.68 22.64 0.22 -0.89 16 10 C -0.01 -0.09 5.90 -19.87 -0.12 -0.20 16 11 C -0.23 -2.17 6.05 -20.33 -0.12 -2.29 16 12 C 0.07 0.71 11.45 85.53 0.98 1.69 16 13 N -0.33 -4.21 12.66 -56.41 -0.71 -4.93 16 14 N -0.46 -2.95 7.32 -56.95 -0.42 -3.37 16 15 H 0.46 0.12 8.96 -213.39 -1.91 -1.79 16 16 C 0.11 0.50 11.40 83.87 0.96 1.46 16 17 C 0.09 1.19 10.73 85.14 0.91 2.11 16 18 N -0.46 -9.21 9.51 -184.11 -1.75 -10.97 16 19 C -0.10 -3.28 3.67 -10.37 -0.04 -3.31 16 20 C 0.13 4.90 7.33 83.18 0.61 5.51 16 21 N -0.66 -32.56 3.69 -737.86 -2.72 -35.28 16 22 C -0.29 -17.17 11.08 84.03 0.93 -16.24 16 23 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 24 C -0.09 -5.31 5.50 84.86 0.47 -4.84 16 25 N -0.97 -64.12 13.70 21.65 0.30 -63.83 16 26 Si 1.11 55.63 25.16 68.60 1.73 57.36 16 27 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 28 H -0.27 -12.22 6.51 99.48 0.65 -11.57 16 29 H -0.27 -12.68 6.21 99.48 0.62 -12.07 16 30 C 0.09 3.85 5.27 83.27 0.44 4.29 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 1.65 7.48 -2.39 -0.02 1.63 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.42 9.57 7.92 -92.71 -0.73 8.84 16 35 H 0.15 2.73 7.63 -2.91 -0.02 2.70 16 36 H 0.17 1.09 7.16 -2.91 -0.02 1.06 16 37 H 0.21 1.06 7.41 -2.91 -0.02 1.04 16 38 H 0.22 -0.76 7.30 -2.91 -0.02 -0.78 16 39 H 0.19 1.07 7.03 -2.91 -0.02 1.05 16 40 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 43 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 44 H 0.04 1.81 7.44 -2.39 -0.02 1.80 16 45 H 0.05 2.01 4.73 -2.39 -0.01 2.00 16 Total: -1.00 -84.98 374.72 -0.49 -85.46 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -1.78 Total: 10.11 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 7.19 Total: 4.95 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -7.57 Total: -138.61 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 55.63 SS G_CDS: 1.73 Total: 57.36 kcal Total: -84.98 -0.49 -85.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969995686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.037 kcal (2) G-P(sol) polarization free energy of solvation -84.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds