Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47856 * 2 1 4 4 N 1.46500 * 109.47137 * 120.00223 * 2 1 3 5 5 C 1.34778 * 120.00385 * 274.99807 * 4 2 1 6 6 O 1.21613 * 119.99442 * 359.97438 * 5 4 2 7 7 C 1.47314 * 120.00448 * 180.02562 * 5 4 2 8 8 C 1.37916 * 126.80060 * 0.02562 * 7 5 4 9 9 N 1.34202 * 107.88851 * 179.97438 * 8 7 5 10 10 H 0.96994 * 125.16180 * 179.97438 * 9 8 7 11 11 N 1.39775 * 109.66515 * 0.02562 * 9 8 7 12 12 C 1.31376 * 109.07327 * 359.72237 * 11 9 8 13 13 C 1.48263 * 126.51105 * 180.24238 * 12 11 9 14 14 C 1.39814 * 120.90609 * 144.91574 * 13 12 11 15 15 C 1.37972 * 119.01432 * 179.77630 * 14 13 12 16 16 N 1.31926 * 120.88405 * 0.51600 * 15 14 13 17 17 C 1.31934 * 122.01527 * 359.73715 * 16 15 14 18 18 C 1.37965 * 120.88753 * 359.97438 * 17 16 15 19 19 C 1.53008 * 109.47293 * 240.00232 * 2 1 3 20 20 C 1.53497 * 114.20384 * 59.99774 * 19 2 1 21 21 N 1.47070 * 87.98301 * 87.52522 * 20 19 2 22 22 C 1.36932 * 136.05620 * 207.08686 * 21 20 19 23 23 H 1.08006 * 120.00205 * 7.81892 * 22 21 20 24 24 C 1.38809 * 120.00281 * 187.82655 * 22 21 20 25 25 N 1.31616 * 120.00068 * 195.17204 * 24 22 21 26 26 Si 1.86802 * 119.99918 * 15.16359 * 24 22 21 27 27 H 1.48504 * 109.47042 * 270.00682 * 26 24 22 28 28 H 1.48499 * 109.47021 * 30.00157 * 26 24 22 29 29 H 1.48492 * 109.47106 * 150.00508 * 26 24 22 30 30 C 1.47068 * 87.88415 * 27.33811 * 21 20 19 31 31 H 1.08999 * 109.46751 * 59.99882 * 1 2 3 32 32 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46758 * 300.00111 * 1 2 3 34 34 H 0.97001 * 120.00124 * 94.99855 * 4 2 1 35 35 H 1.08002 * 126.06099 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.49558 * 0.02562 * 14 13 12 37 37 H 1.07994 * 119.55423 * 180.22990 * 15 14 13 38 38 H 1.08000 * 119.55495 * 180.02562 * 17 16 15 39 39 H 1.07994 * 120.49553 * 180.02562 * 18 17 16 40 40 H 1.09008 * 113.41028 * 286.80480 * 19 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 20 19 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 20 19 2 43 43 H 0.96995 * 120.00585 * 354.89801 * 25 24 22 44 44 H 1.09005 * 113.46482 * 87.44223 * 30 21 20 45 45 H 1.09000 * 113.46807 * 217.87726 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8583 1.1617 2.4117 7 6 2.6387 -0.7127 3.5598 8 6 3.0058 -2.0387 3.6563 9 7 3.3940 -2.2680 4.9203 10 1 3.7030 -3.1209 5.2636 11 7 3.2842 -1.0915 5.6669 12 6 2.8399 -0.1298 4.8899 13 6 2.5867 1.2768 5.2841 14 6 2.8235 2.3265 4.3915 15 6 2.5699 3.6205 4.7977 16 7 2.1203 3.8732 6.0120 17 6 1.8887 2.9125 6.8861 18 6 2.1097 1.5902 6.5604 19 6 2.0400 -0.7212 -1.2493 20 6 1.5898 -0.0845 -2.5714 21 7 2.7723 0.7865 -2.4946 22 6 3.1105 2.0324 -2.9511 23 1 2.3627 2.6593 -3.4140 24 6 4.4144 2.4898 -2.8189 25 7 4.6820 3.7691 -2.9738 26 14 5.7894 1.2895 -2.4210 27 1 5.9413 1.1815 -0.9477 28 1 5.4600 -0.0447 -2.9837 29 1 7.0598 1.7775 -3.0152 30 6 3.4340 -0.2722 -1.7172 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 2.9846 -2.7640 2.8563 36 1 3.1955 2.1273 3.3974 37 1 2.7461 4.4377 4.1140 38 1 1.5203 3.1646 7.8695 39 1 1.9176 0.8089 7.2807 40 1 1.9118 -1.8029 -1.2077 41 1 0.6466 0.4561 -2.4938 42 1 1.6123 -0.7734 -3.4158 43 1 3.9826 4.3806 -3.2527 44 1 3.9432 -1.0112 -2.3359 45 1 4.0621 0.1088 -0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970048561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = 142.314230 kcal Electronic energy + Delta-G solvation = -29482.846544 eV Core-core repulsion = 25504.398158 eV Total energy + Delta-G solvation = -3978.448385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52302 -39.78196 -39.65870 -38.34115 -34.87861 -33.71022 -32.42844 -31.45870 -31.13747 -30.72763 -29.55197 -27.80747 -25.41230 -24.46615 -24.09643 -23.50622 -22.85181 -21.44079 -20.59669 -20.01076 -19.36511 -18.33344 -17.37886 -16.76894 -16.52189 -16.20873 -16.09774 -15.67767 -15.23035 -15.07547 -14.64282 -14.23024 -14.14872 -13.82762 -13.71796 -13.62345 -13.37619 -13.23450 -13.13989 -12.87979 -12.26707 -12.01645 -11.74649 -11.48208 -11.28141 -11.19980 -10.93651 -10.66751 -10.66379 -10.31414 -10.08310 -9.82891 -9.49346 -9.43104 -9.37170 -9.15904 -9.07292 -8.87444 -8.79708 -8.64982 -7.14939 -6.26189 -3.18284 0.78522 1.20839 1.26028 2.12220 2.29961 3.25188 3.41393 3.42125 3.47394 3.62565 3.89730 3.95111 4.24024 4.53080 4.61817 4.69535 4.78074 4.87328 4.93738 5.04209 5.06064 5.13401 5.20801 5.26407 5.45748 5.60970 5.65979 5.72044 5.72550 5.84071 5.91129 5.95938 6.08280 6.13704 6.20337 6.28732 6.31645 6.35287 6.47008 6.52749 6.66075 6.69985 6.76650 6.92875 7.08910 7.16140 7.66385 8.02453 8.28273 8.40292 9.01547 9.55071 10.40842 11.23778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003553 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.989513 B = 7878.803225 C = 8777.335520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.106 0.894 4 N -0.718 5.718 5 C 0.588 3.412 6 O -0.527 6.527 7 C -0.270 4.270 8 C 0.107 3.893 9 N -0.463 5.463 10 H 0.445 0.555 11 N -0.277 5.277 12 C 0.169 3.831 13 C 0.013 3.987 14 C -0.100 4.100 15 C 0.093 3.907 16 N -0.479 5.479 17 C 0.083 3.917 18 C -0.145 4.145 19 C -0.140 4.140 20 C 0.126 3.874 21 N -0.621 5.621 22 C -0.304 4.304 23 H 0.081 0.919 24 C -0.022 4.022 25 N -0.932 5.932 26 Si 1.061 2.939 27 H -0.294 1.294 28 H -0.283 1.283 29 H -0.296 1.296 30 C 0.105 3.895 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.391 0.609 35 H 0.191 0.809 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.262 0.738 44 H 0.044 0.956 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 -16.563 16.881 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.065 3.935 3 H 0.124 0.876 4 N -0.368 5.368 5 C 0.375 3.625 6 O -0.405 6.405 7 C -0.285 4.285 8 C -0.043 4.043 9 N -0.168 5.168 10 H 0.289 0.711 11 N -0.098 5.098 12 C 0.000 4.000 13 C 0.003 3.997 14 C -0.121 4.121 15 C -0.063 4.063 16 N -0.188 5.188 17 C -0.074 4.074 18 C -0.166 4.166 19 C -0.160 4.160 20 C -0.001 4.001 21 N -0.350 5.350 22 C -0.431 4.431 23 H 0.099 0.901 24 C -0.221 4.221 25 N -0.574 5.574 26 Si 0.893 3.107 27 H -0.222 1.222 28 H -0.210 1.210 29 H -0.224 1.224 30 C -0.020 4.020 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.207 0.793 36 H 0.176 0.824 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.151 0.849 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.112 -15.003 18.532 24.196 hybrid contribution -1.382 -1.917 -1.536 2.818 sum -5.494 -16.920 16.997 24.604 Atomic orbital electron populations 1.22105 0.95493 1.01291 1.02566 1.20643 0.93303 0.98259 0.81255 0.87627 1.45927 1.67728 1.13441 1.09741 1.17100 0.77430 0.86220 0.81716 1.90784 1.50305 1.14954 1.84422 1.21404 1.18183 0.93496 0.95460 1.23051 0.95380 0.97076 0.88799 1.45947 1.52196 1.11477 1.07224 0.71051 1.77351 1.23247 0.91156 1.18027 1.21681 0.95815 0.92570 0.89957 1.17943 0.99286 0.88391 0.94100 1.22682 0.96606 0.92290 1.00525 1.22768 0.95088 0.96009 0.92470 1.67607 1.10652 1.37378 1.03183 1.22572 0.97624 0.88263 0.98959 1.22126 1.00195 0.98458 0.95836 1.23189 0.99547 0.98022 0.95277 1.22392 0.93076 0.91950 0.92687 1.46247 1.13167 1.12718 1.62838 1.20117 0.96322 0.87438 1.39193 0.90090 1.25705 0.97277 0.99234 0.99919 1.70882 1.36892 1.01367 1.48225 0.83789 0.76105 0.74771 0.76016 1.22209 1.20976 1.22385 1.22717 0.93890 0.91092 0.94349 0.91221 0.93117 0.92439 0.77559 0.79258 0.82439 0.82194 0.82793 0.84856 0.90678 0.93214 0.94564 0.92809 0.93852 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.29 37.16 0.35 -1.77 16 2 C 0.17 2.58 2.43 -67.93 -0.16 2.42 16 3 H 0.11 2.15 7.36 -51.93 -0.38 1.77 16 4 N -0.72 -8.87 5.07 -54.92 -0.28 -9.15 16 5 C 0.59 8.45 7.67 -12.57 -0.10 8.35 16 6 O -0.53 -9.47 12.15 5.27 0.06 -9.41 16 7 C -0.27 -3.22 6.28 -102.95 -0.65 -3.86 16 8 C 0.11 0.78 11.50 -16.63 -0.19 0.59 16 9 N -0.46 -3.36 7.20 30.81 0.22 -3.14 16 10 H 0.44 1.47 8.96 -182.85 -1.64 -0.17 16 11 N -0.28 -3.14 12.64 34.57 0.44 -2.71 16 12 C 0.17 2.21 6.98 -80.57 -0.56 1.64 16 13 C 0.01 0.18 5.75 -104.60 -0.60 -0.42 16 14 C -0.10 -1.51 7.90 -39.09 -0.31 -1.82 16 15 C 0.09 1.35 11.17 -17.61 -0.20 1.16 16 16 N -0.48 -6.86 10.35 -13.35 -0.14 -7.00 16 17 C 0.08 0.99 11.17 -17.61 -0.20 0.79 16 18 C -0.14 -1.74 9.88 -39.09 -0.39 -2.13 16 19 C -0.14 -2.13 3.73 -89.97 -0.34 -2.47 16 20 C 0.13 2.30 8.08 -8.50 -0.07 2.23 16 21 N -0.62 -14.72 3.42 -184.59 -0.63 -15.35 16 22 C -0.30 -8.68 11.03 -15.06 -0.17 -8.85 16 23 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 24 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 25 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 26 Si 1.06 26.63 25.50 -169.99 -4.34 22.30 16 27 H -0.29 -7.17 6.97 56.52 0.39 -6.77 16 28 H -0.28 -6.50 5.66 56.52 0.32 -6.18 16 29 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 30 C 0.11 2.08 5.15 -8.37 -0.04 2.04 16 31 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.39 3.32 7.56 -40.82 -0.31 3.01 16 35 H 0.19 0.51 7.48 -52.49 -0.39 0.12 16 36 H 0.16 2.62 5.77 -52.49 -0.30 2.32 16 37 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.05 0.89 6.43 -51.93 -0.33 0.55 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 44 H 0.04 0.84 7.02 -51.93 -0.36 0.47 16 45 H 0.05 1.08 6.21 -51.93 -0.32 0.76 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -37.55 370.11 -9.05 -46.60 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.01 Total: 3.94 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.72 Total: -2.85 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.37 Total: -66.17 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.06 Total: -9.41 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.34 Total: 22.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.55 -9.05 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970048561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.916 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds