Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47856 * 2 1 4 4 N 1.46500 * 109.47137 * 120.00223 * 2 1 3 5 5 C 1.34778 * 120.00385 * 274.99807 * 4 2 1 6 6 O 1.21613 * 119.99442 * 359.97438 * 5 4 2 7 7 C 1.47314 * 120.00448 * 180.02562 * 5 4 2 8 8 C 1.37916 * 126.80060 * 0.02562 * 7 5 4 9 9 N 1.34202 * 107.88851 * 179.97438 * 8 7 5 10 10 H 0.96994 * 125.16180 * 179.97438 * 9 8 7 11 11 N 1.39775 * 109.66515 * 0.02562 * 9 8 7 12 12 C 1.31376 * 109.07327 * 359.72237 * 11 9 8 13 13 C 1.48263 * 126.51105 * 180.24238 * 12 11 9 14 14 C 1.39814 * 120.90609 * 144.91574 * 13 12 11 15 15 C 1.37972 * 119.01432 * 179.77630 * 14 13 12 16 16 N 1.31926 * 120.88405 * 0.51600 * 15 14 13 17 17 C 1.31934 * 122.01527 * 359.73715 * 16 15 14 18 18 C 1.37965 * 120.88753 * 359.97438 * 17 16 15 19 19 C 1.53008 * 109.47293 * 240.00232 * 2 1 3 20 20 C 1.53497 * 114.20384 * 59.99774 * 19 2 1 21 21 N 1.47070 * 87.98301 * 87.52522 * 20 19 2 22 22 C 1.36932 * 136.05620 * 207.08686 * 21 20 19 23 23 H 1.08006 * 120.00205 * 7.81892 * 22 21 20 24 24 C 1.38809 * 120.00281 * 187.82655 * 22 21 20 25 25 N 1.31616 * 120.00068 * 195.17204 * 24 22 21 26 26 Si 1.86802 * 119.99918 * 15.16359 * 24 22 21 27 27 H 1.48504 * 109.47042 * 270.00682 * 26 24 22 28 28 H 1.48499 * 109.47021 * 30.00157 * 26 24 22 29 29 H 1.48492 * 109.47106 * 150.00508 * 26 24 22 30 30 C 1.47068 * 87.88415 * 27.33811 * 21 20 19 31 31 H 1.08999 * 109.46751 * 59.99882 * 1 2 3 32 32 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46758 * 300.00111 * 1 2 3 34 34 H 0.97001 * 120.00124 * 94.99855 * 4 2 1 35 35 H 1.08002 * 126.06099 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.49558 * 0.02562 * 14 13 12 37 37 H 1.07994 * 119.55423 * 180.22990 * 15 14 13 38 38 H 1.08000 * 119.55495 * 180.02562 * 17 16 15 39 39 H 1.07994 * 120.49553 * 180.02562 * 18 17 16 40 40 H 1.09008 * 113.41028 * 286.80480 * 19 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 20 19 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 20 19 2 43 43 H 0.96995 * 120.00585 * 354.89801 * 25 24 22 44 44 H 1.09005 * 113.46482 * 87.44223 * 30 21 20 45 45 H 1.09000 * 113.46807 * 217.87726 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8583 1.1617 2.4117 7 6 2.6387 -0.7127 3.5598 8 6 3.0058 -2.0387 3.6563 9 7 3.3940 -2.2680 4.9203 10 1 3.7030 -3.1209 5.2636 11 7 3.2842 -1.0915 5.6669 12 6 2.8399 -0.1298 4.8899 13 6 2.5867 1.2768 5.2841 14 6 2.8235 2.3265 4.3915 15 6 2.5699 3.6205 4.7977 16 7 2.1203 3.8732 6.0120 17 6 1.8887 2.9125 6.8861 18 6 2.1097 1.5902 6.5604 19 6 2.0400 -0.7212 -1.2493 20 6 1.5898 -0.0845 -2.5714 21 7 2.7723 0.7865 -2.4946 22 6 3.1105 2.0324 -2.9511 23 1 2.3627 2.6593 -3.4140 24 6 4.4144 2.4898 -2.8189 25 7 4.6820 3.7691 -2.9738 26 14 5.7894 1.2895 -2.4210 27 1 5.9413 1.1815 -0.9477 28 1 5.4600 -0.0447 -2.9837 29 1 7.0598 1.7775 -3.0152 30 6 3.4340 -0.2722 -1.7172 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 2.9846 -2.7640 2.8563 36 1 3.1955 2.1273 3.3974 37 1 2.7461 4.4377 4.1140 38 1 1.5203 3.1646 7.8695 39 1 1.9176 0.8089 7.2807 40 1 1.9118 -1.8029 -1.2077 41 1 0.6466 0.4561 -2.4938 42 1 1.6123 -0.7734 -3.4158 43 1 3.9826 4.3806 -3.2527 44 1 3.9432 -1.0112 -2.3359 45 1 4.0621 0.1088 -0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970048561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = 112.280509 kcal Electronic energy + Delta-G solvation = -29484.148904 eV Core-core repulsion = 25504.398158 eV Total energy + Delta-G solvation = -3979.750745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32241 -40.94035 -40.77495 -39.64816 -36.14939 -34.69302 -34.44144 -32.57199 -32.19064 -31.58718 -30.60069 -29.53450 -26.91633 -25.54786 -25.28075 -24.55420 -24.11549 -22.85002 -21.55555 -21.10001 -20.56923 -19.62987 -19.06019 -17.75130 -17.51685 -17.35716 -17.10542 -16.84514 -16.70667 -16.12873 -15.89011 -15.62641 -15.28418 -15.24435 -14.96436 -14.82316 -14.69098 -14.51653 -14.38814 -13.72483 -13.61225 -13.31407 -13.11146 -12.74930 -12.72382 -12.54356 -12.36342 -12.15059 -11.84925 -11.63525 -11.55474 -11.34151 -11.05801 -10.87591 -10.79241 -10.50234 -10.24948 -10.09897 -9.94695 -9.69056 -9.16229 -8.58001 -5.40118 -0.21004 0.22655 0.52770 1.18057 1.36776 1.49780 1.64499 1.68227 2.22555 2.43369 2.57086 2.88144 3.12530 3.15784 3.21454 3.50760 3.53119 3.55616 3.85907 3.96589 4.09283 4.11719 4.20114 4.33343 4.36032 4.41924 4.50593 4.63529 4.67251 4.69556 4.73985 4.77595 4.80631 4.84668 4.91482 4.93774 5.14660 5.21993 5.27374 5.31192 5.34473 5.47832 5.69116 5.73708 6.00831 6.18122 6.35201 6.74795 6.75481 6.98262 7.40344 7.43525 8.35119 8.93858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003553 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.989513 B = 7878.803225 C = 8777.335520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.042 0.958 4 N -0.702 5.702 5 C 0.583 3.417 6 O -0.577 6.577 7 C -0.309 4.309 8 C 0.150 3.850 9 N -0.441 5.441 10 H 0.465 0.535 11 N -0.291 5.291 12 C 0.144 3.856 13 C 0.005 3.995 14 C -0.118 4.118 15 C 0.077 3.923 16 N -0.499 5.499 17 C 0.085 3.915 18 C -0.141 4.141 19 C -0.103 4.103 20 C 0.120 3.880 21 N -0.660 5.660 22 C -0.285 4.285 23 H 0.043 0.957 24 C -0.090 4.090 25 N -0.975 5.975 26 Si 1.104 2.896 27 H -0.288 1.288 28 H -0.241 1.241 29 H -0.307 1.307 30 C 0.096 3.904 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.038 0.962 34 H 0.416 0.584 35 H 0.248 0.752 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.191 0.809 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.244 0.756 44 H 0.067 0.933 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 -22.798 18.410 29.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.069 3.931 3 H 0.060 0.940 4 N -0.354 5.354 5 C 0.372 3.628 6 O -0.458 6.458 7 C -0.324 4.324 8 C -0.002 4.002 9 N -0.149 5.149 10 H 0.315 0.685 11 N -0.113 5.113 12 C -0.024 4.024 13 C -0.006 4.006 14 C -0.140 4.140 15 C -0.079 4.079 16 N -0.209 5.209 17 C -0.072 4.072 18 C -0.162 4.162 19 C -0.123 4.123 20 C -0.005 4.005 21 N -0.388 5.388 22 C -0.413 4.413 23 H 0.061 0.939 24 C -0.281 4.281 25 N -0.621 5.621 26 Si 0.929 3.071 27 H -0.216 1.216 28 H -0.165 1.165 29 H -0.235 1.235 30 C -0.029 4.029 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.253 0.747 35 H 0.264 0.736 36 H 0.151 0.849 37 H 0.176 0.824 38 H 0.208 0.792 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.528 -21.357 20.077 29.660 hybrid contribution -1.401 -0.073 -1.950 2.402 sum -5.929 -21.430 18.127 28.688 Atomic orbital electron populations 1.22002 0.93996 1.03312 1.01177 1.20312 0.94365 0.95588 0.82849 0.93995 1.45598 1.67278 1.14350 1.08131 1.17536 0.76733 0.85790 0.82776 1.90780 1.52406 1.17344 1.85249 1.21249 1.21551 0.95522 0.94113 1.23749 0.91131 0.95833 0.89455 1.46013 1.50493 1.11274 1.07092 0.68528 1.77276 1.23316 0.92034 1.18684 1.21673 0.97176 0.92447 0.91105 1.18207 0.98762 0.89104 0.94497 1.22477 0.98283 0.93170 1.00029 1.22791 0.95945 0.96042 0.93096 1.67641 1.11536 1.38461 1.03260 1.23206 0.96223 0.88027 0.99767 1.22406 0.99165 0.99120 0.95484 1.22989 0.95176 1.01132 0.92964 1.22695 0.91020 0.91398 0.95370 1.46308 1.16299 1.12691 1.63545 1.19936 0.95171 0.89779 1.36389 0.93891 1.27073 1.00327 0.99809 1.00897 1.71002 1.36488 1.02635 1.51947 0.83321 0.72792 0.74706 0.76264 1.21576 1.16490 1.23526 1.23010 0.96198 0.90003 0.93647 0.92303 0.89170 0.94293 0.74652 0.73636 0.84893 0.82373 0.79209 0.82382 0.84225 0.93535 0.91814 0.94720 0.91514 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.29 71.98 0.67 -3.04 16 2 C 0.17 5.04 2.43 44.99 0.11 5.15 16 3 H 0.04 1.79 7.36 -2.39 -0.02 1.77 16 4 N -0.70 -15.34 5.07 -445.91 -2.26 -17.60 16 5 C 0.58 16.44 7.67 86.63 0.66 17.11 16 6 O -0.58 -22.16 12.15 -4.07 -0.05 -22.21 16 7 C -0.31 -6.74 6.28 -18.78 -0.12 -6.85 16 8 C 0.15 1.43 11.50 84.25 0.97 2.40 16 9 N -0.44 -4.39 7.20 -56.43 -0.41 -4.80 16 10 H 0.47 0.59 8.96 -213.54 -1.91 -1.33 16 11 N -0.29 -5.89 12.64 -44.54 -0.56 -6.45 16 12 C 0.14 3.64 6.98 44.06 0.31 3.95 16 13 C 0.00 0.13 5.75 -19.85 -0.11 0.02 16 14 C -0.12 -3.91 7.90 22.59 0.18 -3.73 16 15 C 0.08 2.45 11.17 84.62 0.95 3.39 16 16 N -0.50 -14.88 10.35 -196.14 -2.03 -16.91 16 17 C 0.08 1.99 11.17 84.61 0.95 2.93 16 18 C -0.14 -3.30 9.88 22.59 0.22 -3.08 16 19 C -0.10 -2.69 3.73 -10.37 -0.04 -2.73 16 20 C 0.12 4.06 8.08 83.18 0.67 4.73 16 21 N -0.66 -30.85 3.42 -737.93 -2.53 -33.38 16 22 C -0.28 -16.89 11.03 84.03 0.93 -15.97 16 23 H 0.04 2.79 8.06 -2.91 -0.02 2.76 16 24 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 25 N -0.97 -65.65 13.70 21.65 0.30 -65.35 16 26 Si 1.10 54.32 25.50 68.60 1.75 56.07 16 27 H -0.29 -13.74 6.97 99.48 0.69 -13.05 16 28 H -0.24 -10.04 5.66 99.48 0.56 -9.48 16 29 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 30 C 0.10 3.48 5.15 83.26 0.43 3.91 16 31 H 0.06 1.60 6.50 -2.39 -0.02 1.59 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.42 4.64 7.56 -92.71 -0.70 3.94 16 35 H 0.25 -0.67 7.48 -2.91 -0.02 -0.69 16 36 H 0.13 5.02 5.77 -2.91 -0.02 5.00 16 37 H 0.16 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.05 1.59 6.43 -2.39 -0.02 1.58 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.24 16.56 8.73 -92.71 -0.81 15.75 16 44 H 0.07 2.18 7.02 -2.38 -0.02 2.17 16 45 H 0.03 1.35 6.21 -2.39 -0.01 1.34 16 Total: -1.00 -93.64 370.11 -0.31 -93.94 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -1.75 Total: 13.58 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 7.23 Total: 3.12 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -7.49 Total: -144.49 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 54.32 SS G_CDS: 1.75 Total: 56.07 kcal Total: -93.64 -0.31 -93.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970048561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.223 kcal (2) G-P(sol) polarization free energy of solvation -93.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds