Wall clock time and date at job start Sat Apr 11 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 5 5 C 1.34779 * 119.99461 * 274.99712 * 4 2 1 6 6 O 1.21574 * 120.00484 * 0.02562 * 5 4 2 7 7 C 1.47696 * 119.99437 * 180.02562 * 5 4 2 8 8 C 1.41569 * 126.43594 * 180.02562 * 7 5 4 9 9 C 1.35325 * 105.55772 * 179.97438 * 8 7 5 10 10 N 1.35916 * 107.11315 * 359.97438 * 9 8 7 11 11 C 1.39910 * 124.95881 * 180.02562 * 10 9 8 12 12 C 1.39325 * 120.86065 * 359.72792 * 11 10 9 13 13 C 1.38018 * 119.07989 * 179.70816 * 12 11 10 14 14 N 1.31933 * 120.83419 * 0.57487 * 13 12 11 15 15 C 1.31937 * 121.88494 * 359.71515 * 14 13 12 16 16 C 1.38017 * 120.83292 * 359.97438 * 15 14 13 17 17 N 1.28476 * 110.07464 * 359.76261 * 10 9 8 18 18 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 19 19 C 1.53943 * 113.74049 * 158.74593 * 18 2 1 20 20 N 1.47812 * 86.03624 * 222.08213 * 19 18 2 21 21 C 1.36932 * 134.45834 * 204.63677 * 20 19 18 22 22 H 1.07995 * 120.00395 * 179.86632 * 21 20 19 23 23 C 1.38817 * 120.00007 * 359.87680 * 21 20 19 24 24 N 1.31616 * 120.00028 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99813 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47531 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47185 * 119.99911 * 25 23 21 28 28 H 1.48507 * 109.46809 * 239.99104 * 25 23 21 29 29 C 1.47583 * 91.04785 * 24.54989 * 20 19 18 30 30 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 32 32 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 33 33 H 0.96995 * 119.99814 * 94.99660 * 4 2 1 34 34 H 1.07995 * 127.21975 * 359.95767 * 8 7 5 35 35 H 1.08001 * 126.44366 * 179.97438 * 9 8 7 36 36 H 1.08003 * 120.45907 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.58463 * 180.29081 * 13 12 11 38 38 H 1.07996 * 119.58093 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.46135 * 180.02562 * 16 15 14 40 40 H 1.09002 * 112.94415 * 290.33524 * 18 2 1 41 41 H 1.09003 * 113.76909 * 336.34642 * 19 18 2 42 42 H 1.09000 * 113.77268 * 107.74525 * 19 18 2 43 43 H 0.96995 * 120.00501 * 180.02562 * 24 23 21 44 44 H 1.09002 * 113.76477 * 221.14838 * 29 20 19 45 45 H 1.09002 * 113.87465 * 89.77029 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1613 2.4118 7 6 2.6398 -0.7143 3.5630 8 6 2.8261 -0.1448 4.8456 9 6 3.2873 -1.1498 5.6255 10 7 3.3689 -2.2581 4.8430 11 6 3.8043 -3.5152 5.2764 12 6 4.2046 -3.7172 6.5955 13 6 4.6217 -4.9739 6.9849 14 7 4.6548 -5.9726 6.1234 15 6 4.2894 -5.8197 4.8649 16 6 3.8539 -4.5960 4.3984 17 7 2.9827 -1.9841 3.6487 18 6 2.0400 -0.7213 -1.2492 19 6 3.4848 -0.3523 -1.6316 20 7 2.9979 -0.3179 -3.0268 21 6 3.5876 -0.4759 -4.2525 22 1 2.9929 -0.4040 -5.1512 23 6 4.9497 -0.7287 -4.3401 24 7 5.6745 -0.8160 -3.2450 25 14 5.7539 -0.9449 -6.0122 26 1 4.7286 -0.8020 -7.0768 27 1 6.8042 0.0891 -6.1938 28 1 6.3684 -2.2943 -6.0951 29 6 1.6214 -0.0473 -2.5684 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 2.6395 0.8775 5.1397 35 1 3.5426 -1.0838 6.6729 36 1 4.1847 -2.9028 7.3045 37 1 4.9293 -5.1408 8.0066 38 1 4.3309 -6.6630 4.1915 39 1 3.5559 -4.4777 3.3671 40 1 1.8528 -1.7949 -1.2262 41 1 3.8048 0.6189 -1.2539 42 1 4.2071 -1.1449 -1.4366 43 1 6.6264 -0.9923 -3.3061 44 1 0.8587 -0.5970 -3.1199 45 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970131727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:54 Heat of formation + Delta-G solvation = 146.827218 kcal Electronic energy + Delta-G solvation = -28338.750761 eV Core-core repulsion = 24360.498074 eV Total energy + Delta-G solvation = -3978.252687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.27256 -40.49172 -39.55259 -37.97091 -34.83638 -34.75456 -32.27874 -32.10819 -31.11671 -30.95155 -29.87322 -27.49754 -25.62665 -24.69472 -24.37684 -23.90383 -22.72637 -21.59168 -21.05263 -20.14107 -19.23071 -18.89301 -17.29105 -16.71870 -16.56834 -16.54401 -16.38428 -15.98047 -15.41393 -14.88534 -14.71480 -14.41297 -14.27086 -14.13634 -13.97976 -13.84333 -13.51489 -13.34978 -13.01581 -12.41616 -12.28913 -12.10908 -11.64332 -11.33762 -11.27597 -11.25962 -11.13648 -10.90031 -10.71547 -10.33191 -10.18642 -10.08487 -9.79658 -9.79526 -9.72768 -9.64863 -9.38886 -9.08361 -8.77975 -8.76588 -6.84721 -5.74062 -3.06265 0.15110 0.53455 1.59415 1.84844 1.90765 3.23409 3.26740 3.40131 3.42214 3.45298 3.47985 3.80339 3.91383 4.13862 4.38040 4.41864 4.47098 4.57422 4.80372 4.96655 5.12884 5.13899 5.22392 5.28653 5.30112 5.31630 5.41310 5.50390 5.56104 5.68542 5.82435 5.96400 5.98328 6.04054 6.05894 6.26631 6.37817 6.43124 6.43555 6.60600 6.68170 6.81926 7.26954 7.39066 7.39830 7.40783 7.59289 7.73746 8.00694 8.30476 9.07166 9.73530 10.63054 11.42978 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.002548 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.164717 B =10986.185796 C =12750.623415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.701 5.701 5 C 0.601 3.399 6 O -0.532 6.532 7 C 0.012 3.988 8 C -0.164 4.164 9 C -0.016 4.016 10 N -0.244 5.244 11 C 0.188 3.812 12 C -0.187 4.187 13 C 0.125 3.875 14 N -0.488 5.488 15 C 0.126 3.874 16 C -0.165 4.165 17 N -0.254 5.254 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.221 4.221 22 H 0.080 0.920 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.406 0.594 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.252 0.748 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 -6.566 23.675 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.108 0.892 4 N -0.350 5.350 5 C 0.385 3.615 6 O -0.407 6.407 7 C -0.152 4.152 8 C -0.191 4.191 9 C -0.154 4.154 10 N -0.026 5.026 11 C 0.089 3.911 12 C -0.209 4.209 13 C -0.032 4.032 14 N -0.198 5.198 15 C -0.031 4.031 16 C -0.186 4.186 17 N -0.086 5.086 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.098 0.902 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.241 0.759 34 H 0.189 0.811 35 H 0.205 0.795 36 H 0.163 0.837 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.173 0.827 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.948 -7.606 23.111 25.047 hybrid contribution 0.399 1.186 -0.663 1.416 sum -5.549 -6.420 22.448 23.998 Atomic orbital electron populations 1.22137 0.95491 1.01855 1.02195 1.21177 0.93605 0.97636 0.83052 0.89207 1.45969 1.65539 1.14434 1.09097 1.16798 0.77650 0.85690 0.81407 1.90799 1.50778 1.14719 1.84425 1.22324 1.06049 0.90235 0.96560 1.21917 1.04738 1.00983 0.91502 1.23066 1.07004 0.85860 0.99513 1.42650 1.45830 1.07523 1.06621 1.17925 0.96713 0.82542 0.93927 1.21904 1.04055 1.00776 0.94190 1.22710 0.93798 0.87056 0.99685 1.67734 1.14712 1.33863 1.03483 1.22844 0.92118 0.96053 0.92081 1.22108 1.02242 0.92320 1.01951 1.73571 1.15487 1.17474 1.02105 1.23824 1.00958 0.99712 0.92172 1.22295 0.91384 0.98526 0.83252 1.46009 1.03320 1.82574 1.02028 1.19070 0.91431 1.41402 0.82984 0.90221 1.24789 0.96075 1.02484 0.97243 1.69829 1.05987 1.55300 1.25677 0.86059 0.79310 0.77357 0.83119 1.20471 1.21784 1.21747 1.22486 0.89642 0.96636 0.90813 0.92679 0.92690 0.91255 0.75948 0.81080 0.79542 0.83666 0.81520 0.81330 0.82668 0.89348 0.95588 0.91051 0.93764 0.93739 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.31 37.16 0.35 -1.79 16 2 C 0.15 2.37 2.38 -67.92 -0.16 2.21 16 3 H 0.09 1.61 7.41 -51.93 -0.39 1.23 16 4 N -0.70 -10.41 5.07 -54.79 -0.28 -10.69 16 5 C 0.60 9.43 7.79 -12.40 -0.10 9.33 16 6 O -0.53 -9.69 16.58 5.30 0.09 -9.60 16 7 C 0.01 0.16 7.13 -82.75 -0.59 -0.43 16 8 C -0.16 -1.79 10.80 -39.35 -0.42 -2.22 16 9 C -0.02 -0.14 10.82 -16.78 -0.18 -0.32 16 10 N -0.24 -2.57 3.51 -10.37 -0.04 -2.61 16 11 C 0.19 1.69 6.70 -83.36 -0.56 1.13 16 12 C -0.19 -1.17 9.50 -39.26 -0.37 -1.54 16 13 C 0.12 0.78 11.17 -17.59 -0.20 0.58 16 14 N -0.49 -4.10 10.36 -13.32 -0.14 -4.24 16 15 C 0.13 0.97 11.18 -17.59 -0.20 0.78 16 16 C -0.16 -1.44 9.67 -39.25 -0.38 -1.82 16 17 N -0.25 -3.25 10.94 33.43 0.37 -2.88 16 18 C -0.15 -2.67 3.47 -89.70 -0.31 -2.98 16 19 C 0.17 4.05 7.08 -2.84 -0.02 4.03 16 20 N -0.61 -15.91 3.70 -177.71 -0.66 -16.57 16 21 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -27.70 11.39 55.49 0.63 -27.07 16 25 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 C 0.13 2.64 7.64 -2.97 -0.02 2.62 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.41 5.55 8.32 -40.82 -0.34 5.21 16 34 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.19 0.78 7.04 -52.49 -0.37 0.41 16 36 H 0.15 0.49 6.78 -52.48 -0.36 0.13 16 37 H 0.17 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.16 1.37 7.74 -52.49 -0.41 0.96 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 42 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -35.77 384.22 -8.64 -44.41 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.96 Total: 3.31 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.42 Total: 2.75 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.11 Total: -64.05 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.77 -8.64 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970131727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.241 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds