Wall clock time and date at job start Sat Apr 11 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47360 * 2 1 4 4 N 1.46506 * 109.46831 * 120.00078 * 2 1 3 5 5 C 1.34779 * 119.99461 * 274.99712 * 4 2 1 6 6 O 1.21574 * 120.00484 * 0.02562 * 5 4 2 7 7 C 1.47696 * 119.99437 * 180.02562 * 5 4 2 8 8 C 1.41569 * 126.43594 * 180.02562 * 7 5 4 9 9 C 1.35325 * 105.55772 * 179.97438 * 8 7 5 10 10 N 1.35916 * 107.11315 * 359.97438 * 9 8 7 11 11 C 1.39910 * 124.95881 * 180.02562 * 10 9 8 12 12 C 1.39325 * 120.86065 * 359.72792 * 11 10 9 13 13 C 1.38018 * 119.07989 * 179.70816 * 12 11 10 14 14 N 1.31933 * 120.83419 * 0.57487 * 13 12 11 15 15 C 1.31937 * 121.88494 * 359.71515 * 14 13 12 16 16 C 1.38017 * 120.83292 * 359.97438 * 15 14 13 17 17 N 1.28476 * 110.07464 * 359.76261 * 10 9 8 18 18 C 1.53002 * 109.46982 * 239.99707 * 2 1 3 19 19 C 1.53943 * 113.74049 * 158.74593 * 18 2 1 20 20 N 1.47812 * 86.03624 * 222.08213 * 19 18 2 21 21 C 1.36932 * 134.45834 * 204.63677 * 20 19 18 22 22 H 1.07995 * 120.00395 * 179.86632 * 21 20 19 23 23 C 1.38817 * 120.00007 * 359.87680 * 21 20 19 24 24 N 1.31616 * 120.00028 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99813 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47531 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47185 * 119.99911 * 25 23 21 28 28 H 1.48507 * 109.46809 * 239.99104 * 25 23 21 29 29 C 1.47583 * 91.04785 * 24.54989 * 20 19 18 30 30 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46812 * 300.00367 * 1 2 3 32 32 H 1.09002 * 109.46935 * 60.00025 * 1 2 3 33 33 H 0.96995 * 119.99814 * 94.99660 * 4 2 1 34 34 H 1.07995 * 127.21975 * 359.95767 * 8 7 5 35 35 H 1.08001 * 126.44366 * 179.97438 * 9 8 7 36 36 H 1.08003 * 120.45907 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.58463 * 180.29081 * 13 12 11 38 38 H 1.07996 * 119.58093 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.46135 * 180.02562 * 16 15 14 40 40 H 1.09002 * 112.94415 * 290.33524 * 18 2 1 41 41 H 1.09003 * 113.76909 * 336.34642 * 19 18 2 42 42 H 1.09000 * 113.77268 * 107.74525 * 19 18 2 43 43 H 0.96995 * 120.00501 * 180.02562 * 24 23 21 44 44 H 1.09002 * 113.76477 * 221.14838 * 29 20 19 45 45 H 1.09002 * 113.87465 * 89.77029 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1613 2.4118 7 6 2.6398 -0.7143 3.5630 8 6 2.8261 -0.1448 4.8456 9 6 3.2873 -1.1498 5.6255 10 7 3.3689 -2.2581 4.8430 11 6 3.8043 -3.5152 5.2764 12 6 4.2046 -3.7172 6.5955 13 6 4.6217 -4.9739 6.9849 14 7 4.6548 -5.9726 6.1234 15 6 4.2894 -5.8197 4.8649 16 6 3.8539 -4.5960 4.3984 17 7 2.9827 -1.9841 3.6487 18 6 2.0400 -0.7213 -1.2492 19 6 3.4848 -0.3523 -1.6316 20 7 2.9979 -0.3179 -3.0268 21 6 3.5876 -0.4759 -4.2525 22 1 2.9929 -0.4040 -5.1512 23 6 4.9497 -0.7287 -4.3401 24 7 5.6745 -0.8160 -3.2450 25 14 5.7539 -0.9449 -6.0122 26 1 4.7286 -0.8020 -7.0768 27 1 6.8042 0.0891 -6.1938 28 1 6.3684 -2.2943 -6.0951 29 6 1.6214 -0.0473 -2.5684 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 2.6395 0.8775 5.1397 35 1 3.5426 -1.0838 6.6729 36 1 4.1847 -2.9028 7.3045 37 1 4.9293 -5.1408 8.0066 38 1 4.3309 -6.6630 4.1915 39 1 3.5559 -4.4777 3.3671 40 1 1.8528 -1.7949 -1.2262 41 1 3.8048 0.6189 -1.2539 42 1 4.2071 -1.1449 -1.4366 43 1 6.6264 -0.9923 -3.3061 44 1 0.8587 -0.5970 -3.1199 45 1 1.3909 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970131727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:53 Heat of formation + Delta-G solvation = 122.384799 kcal Electronic energy + Delta-G solvation = -28339.810664 eV Core-core repulsion = 24360.498074 eV Total energy + Delta-G solvation = -3979.312590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07446 -41.16452 -40.80180 -39.58398 -36.24072 -35.51708 -34.19691 -32.79008 -32.21129 -31.70115 -30.90227 -29.36612 -26.85916 -26.15187 -25.54182 -24.96488 -23.75800 -22.48418 -22.29349 -21.37375 -20.54158 -19.75649 -18.78464 -18.33139 -17.46811 -17.34231 -17.12297 -16.92894 -16.87062 -16.15403 -15.85975 -15.75250 -15.54583 -14.91826 -14.84522 -14.78419 -14.69950 -14.62655 -14.27633 -13.96304 -13.45298 -13.28035 -13.10433 -12.92983 -12.84026 -12.72555 -12.54917 -12.11274 -11.99571 -11.89321 -11.76049 -11.55239 -11.34052 -11.15159 -10.89092 -10.70044 -10.44150 -10.30594 -10.14574 -9.77910 -8.93454 -7.91393 -5.25324 -0.51930 0.01362 0.62908 1.12447 1.20616 1.43886 1.45356 1.55712 2.08846 2.28231 2.46208 2.73069 3.04966 3.29254 3.36381 3.47234 3.57718 3.63272 3.76372 3.84475 3.91889 4.02171 4.07061 4.28092 4.42913 4.46043 4.47968 4.57138 4.61578 4.65079 4.73374 4.77357 4.81729 4.85326 4.90327 5.00121 5.07370 5.21076 5.24387 5.32860 5.43220 5.46005 5.53679 5.63991 5.77923 5.91912 6.37205 6.69822 6.87281 6.90182 7.10167 7.59789 8.55597 9.25625 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.002548 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.164717 B =10986.185796 C =12750.623415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.067 0.933 4 N -0.698 5.698 5 C 0.600 3.400 6 O -0.565 6.565 7 C -0.019 4.019 8 C -0.183 4.183 9 C 0.006 3.994 10 N -0.243 5.243 11 C 0.161 3.839 12 C -0.171 4.171 13 C 0.124 3.876 14 N -0.509 5.509 15 C 0.120 3.880 16 C -0.180 4.180 17 N -0.274 5.274 18 C -0.111 4.111 19 C 0.168 3.832 20 N -0.645 5.645 21 C -0.232 4.232 22 H 0.087 0.913 23 C -0.072 4.072 24 N -0.955 5.955 25 Si 0.980 3.020 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.291 1.291 29 C 0.133 3.867 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.181 0.819 35 H 0.238 0.762 36 H 0.182 0.818 37 H 0.202 0.798 38 H 0.184 0.816 39 H 0.144 0.856 40 H 0.101 0.899 41 H 0.004 0.996 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.067 0.933 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 -7.405 25.519 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.085 0.915 4 N -0.348 5.348 5 C 0.385 3.615 6 O -0.442 6.442 7 C -0.180 4.180 8 C -0.210 4.210 9 C -0.132 4.132 10 N -0.025 5.025 11 C 0.062 3.938 12 C -0.193 4.193 13 C -0.033 4.033 14 N -0.218 5.218 15 C -0.036 4.036 16 C -0.201 4.201 17 N -0.107 5.107 18 C -0.131 4.131 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.361 4.361 22 H 0.104 0.896 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.808 3.192 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.218 1.218 29 C 0.008 3.992 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.247 0.753 34 H 0.199 0.801 35 H 0.254 0.746 36 H 0.199 0.801 37 H 0.219 0.781 38 H 0.201 0.799 39 H 0.162 0.838 40 H 0.120 0.880 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.844 -8.464 24.946 27.217 hybrid contribution 0.690 1.385 -1.118 1.909 sum -6.154 -7.079 23.828 25.607 Atomic orbital electron populations 1.22054 0.92896 1.03114 1.02649 1.20962 0.95400 0.95955 0.82352 0.91520 1.45916 1.65473 1.14613 1.08814 1.17095 0.76957 0.85395 0.82039 1.90763 1.52333 1.16031 1.85094 1.22127 1.08105 0.91068 0.96732 1.22164 1.05822 1.02207 0.90769 1.23777 1.04362 0.84102 1.01005 1.42880 1.44912 1.08561 1.06197 1.18303 0.98225 0.81931 0.95319 1.22296 1.01877 1.01829 0.93290 1.23349 0.92637 0.86533 1.00760 1.67782 1.15144 1.35078 1.03828 1.23073 0.91914 0.96171 0.92439 1.22145 1.03103 0.93136 1.01765 1.73496 1.16271 1.17190 1.03771 1.23447 0.96346 1.00458 0.92805 1.22160 0.93960 0.96383 0.83286 1.46442 1.05938 1.82850 1.01907 1.19504 0.91927 1.40240 0.84394 0.89560 1.25681 0.96842 1.03060 1.00882 1.70036 1.05751 1.56865 1.27818 0.84983 0.78216 0.76750 0.79226 1.18674 1.22212 1.21757 1.22677 0.87591 0.97702 0.91269 0.90985 0.92876 0.90158 0.75299 0.80139 0.74620 0.80058 0.78096 0.79873 0.83807 0.88036 0.97806 0.94336 0.94435 0.91514 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.31 71.98 0.67 -3.13 16 2 C 0.16 5.02 2.38 44.99 0.11 5.13 16 3 H 0.07 2.47 7.41 -2.39 -0.02 2.45 16 4 N -0.70 -21.31 5.07 -445.52 -2.26 -23.57 16 5 C 0.60 19.47 7.79 86.74 0.68 20.14 16 6 O -0.56 -21.28 16.58 -3.95 -0.07 -21.35 16 7 C -0.02 -0.52 7.13 42.47 0.30 -0.22 16 8 C -0.18 -3.82 10.80 22.42 0.24 -3.58 16 9 C 0.01 0.09 10.82 83.39 0.90 0.99 16 10 N -0.24 -4.81 3.51 -186.72 -0.66 -5.46 16 11 C 0.16 2.64 6.70 38.38 0.26 2.90 16 12 C -0.17 -1.56 9.50 22.48 0.21 -1.34 16 13 C 0.12 1.16 11.17 84.63 0.95 2.11 16 14 N -0.51 -7.65 10.36 -196.05 -2.03 -9.68 16 15 C 0.12 1.79 11.18 84.62 0.95 2.73 16 16 C -0.18 -3.13 9.67 22.48 0.22 -2.91 16 17 N -0.27 -7.06 10.94 -48.14 -0.53 -7.59 16 18 C -0.11 -4.03 3.47 -10.14 -0.04 -4.07 16 19 C 0.17 8.29 7.08 86.44 0.61 8.91 16 20 N -0.64 -33.92 3.70 -716.16 -2.65 -36.57 16 21 C -0.23 -13.33 10.70 84.04 0.90 -12.43 16 22 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 24 N -0.96 -59.55 11.39 21.65 0.25 -59.30 16 25 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 26 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 29 C 0.13 5.24 7.64 86.48 0.66 5.90 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.88 7.52 -2.39 -0.02 1.86 16 33 H 0.41 11.59 8.32 -92.71 -0.77 10.82 16 34 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.24 0.77 7.04 -2.91 -0.02 0.75 16 36 H 0.18 0.23 6.78 -2.91 -0.02 0.21 16 37 H 0.20 0.37 8.06 -2.91 -0.02 0.34 16 38 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.14 2.73 7.74 -2.91 -0.02 2.71 16 40 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 42 H 0.04 2.13 7.17 -2.39 -0.02 2.12 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -81.28 384.22 2.42 -78.86 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.25 Total: 18.49 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 8.08 Total: 17.37 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -7.88 Total: -142.17 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.07 Total: -21.35 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -81.28 2.42 -78.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970131727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.246 kcal (2) G-P(sol) polarization free energy of solvation -81.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds