Wall clock time and date at job start Sat Apr 11 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 N 1.46498 * 109.47442 * 239.99918 * 2 1 3 5 5 C 1.34779 * 119.99683 * 85.00303 * 4 2 1 6 6 O 1.21571 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.47699 * 119.99921 * 180.02562 * 5 4 2 8 8 C 1.41562 * 126.43899 * 180.02562 * 7 5 4 9 9 C 1.35322 * 105.55681 * 179.97438 * 8 7 5 10 10 N 1.35909 * 107.11801 * 359.97438 * 9 8 7 11 11 C 1.39910 * 124.96551 * 180.02562 * 10 9 8 12 12 C 1.39326 * 120.86047 * 359.72330 * 11 10 9 13 13 C 1.38013 * 119.08152 * 179.70845 * 12 11 10 14 14 N 1.31923 * 120.83426 * 0.57583 * 13 12 11 15 15 C 1.31929 * 121.88711 * 359.71808 * 14 13 12 16 16 C 1.38018 * 120.83239 * 359.97438 * 15 14 13 17 17 N 1.28481 * 110.07099 * 359.76381 * 10 9 8 18 18 C 1.53004 * 109.47254 * 119.99727 * 2 1 3 19 19 C 1.53497 * 114.20756 * 300.00701 * 18 2 1 20 20 N 1.47070 * 87.98301 * 220.34168 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08006 * 120.00205 * 7.81892 * 21 20 19 23 23 C 1.38809 * 120.00281 * 187.82655 * 21 20 19 24 24 N 1.31616 * 120.00068 * 195.17204 * 23 21 20 25 25 Si 1.86802 * 119.99918 * 15.16359 * 23 21 20 26 26 H 1.48504 * 109.47042 * 270.00682 * 25 23 21 27 27 H 1.48499 * 109.47021 * 30.00157 * 25 23 21 28 28 H 1.48492 * 109.47106 * 150.00508 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47359 * 300.00317 * 1 2 3 32 32 H 1.08999 * 109.46774 * 60.00056 * 1 2 3 33 33 H 0.96997 * 120.00314 * 265.00182 * 4 2 1 34 34 H 1.07998 * 127.22261 * 359.95257 * 8 7 5 35 35 H 1.07998 * 126.44196 * 179.97438 * 9 8 7 36 36 H 1.08009 * 120.45498 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.58373 * 180.29331 * 13 12 11 38 38 H 1.07998 * 119.58608 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.46201 * 180.02562 * 16 15 14 40 40 H 1.09005 * 113.40728 * 73.19861 * 18 2 1 41 41 H 1.08996 * 113.46841 * 105.55693 * 19 18 2 42 42 H 1.08998 * 113.51535 * 335.12668 * 19 18 2 43 43 H 0.96995 * 120.00585 * 354.89801 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8576 1.1613 -2.4118 7 6 2.6390 -0.7145 -3.5632 8 6 2.8262 -0.1448 -4.8455 9 6 3.2871 -1.1499 -5.6255 10 7 3.3688 -2.2582 -4.8430 11 6 3.8049 -3.5151 -5.2761 12 6 4.1952 -3.7198 -6.5978 13 6 4.6249 -4.9732 -6.9839 14 7 4.6578 -5.9718 -6.1225 15 6 4.2908 -5.8194 -4.8645 16 6 3.8547 -4.5958 -4.3981 17 7 2.9922 -1.9817 -3.6462 18 6 2.0400 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5715 20 7 2.9389 -0.3445 3.0960 21 6 3.4924 -0.5603 4.3297 22 1 2.8556 -0.6862 5.1929 23 6 4.8721 -0.6173 4.4711 24 7 5.4012 -1.1127 5.5697 25 14 5.9780 0.0091 3.1020 26 1 6.2775 -1.1001 2.1611 27 1 5.2905 1.1048 2.3727 28 1 7.2449 0.5203 3.6839 29 6 3.4328 -0.2642 1.7130 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 2.6399 0.8775 -5.1396 35 1 3.5421 -1.0839 -6.6728 36 1 4.1659 -2.9077 -7.3093 37 1 4.9338 -5.1398 -8.0054 38 1 4.3330 -6.6625 -4.1908 39 1 3.5561 -4.4776 -3.3670 40 1 1.9118 -1.8029 1.2076 41 1 0.8094 -0.6493 3.0815 42 1 1.3544 0.9762 2.4855 43 1 4.8298 -1.3695 6.3102 44 1 3.6837 0.7493 1.3999 45 1 4.2228 -0.9820 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970131729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:57 Heat of formation + Delta-G solvation = 153.361849 kcal Electronic energy + Delta-G solvation = -28440.533520 eV Core-core repulsion = 24462.564195 eV Total energy + Delta-G solvation = -3977.969325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.37903 -40.57717 -39.79420 -38.45568 -35.06732 -34.87661 -32.47307 -32.22774 -31.31913 -31.06189 -30.07503 -27.74157 -25.81137 -25.12086 -24.47390 -23.83855 -22.68071 -21.68814 -20.92935 -20.32013 -19.41543 -19.11292 -17.50011 -17.42896 -16.68108 -16.62950 -16.48278 -16.17433 -15.51849 -15.16493 -14.88426 -14.59184 -14.36424 -14.25849 -14.08205 -13.83106 -13.75909 -13.50170 -13.25647 -12.93876 -12.37345 -12.27293 -11.89688 -11.79676 -11.51452 -11.37983 -11.23306 -10.92780 -10.70301 -10.41085 -10.24884 -10.14851 -9.97813 -9.86990 -9.75285 -9.47684 -9.20154 -9.15406 -8.96971 -8.67434 -7.16466 -6.29314 -3.21154 0.06454 0.46045 1.47393 1.74697 1.81066 3.07578 3.17973 3.28621 3.43065 3.50938 3.64512 3.70627 3.84428 4.05695 4.28044 4.33186 4.48880 4.60532 4.66850 4.74939 4.88009 4.95009 5.05277 5.12592 5.14638 5.19315 5.30778 5.41127 5.45044 5.47701 5.59619 5.76502 5.87878 5.89179 5.93433 6.03056 6.17683 6.26205 6.29807 6.33348 6.35711 6.41764 6.58782 6.94489 7.15148 7.26847 7.33678 7.57760 8.14391 8.25065 8.98780 9.52262 10.39316 11.20714 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002719 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.786208 B =10294.883899 C =11685.556505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.092 0.908 4 N -0.704 5.704 5 C 0.602 3.398 6 O -0.530 6.530 7 C 0.009 3.991 8 C -0.164 4.164 9 C -0.015 4.015 10 N -0.243 5.243 11 C 0.187 3.813 12 C -0.186 4.186 13 C 0.126 3.874 14 N -0.488 5.488 15 C 0.126 3.874 16 C -0.165 4.165 17 N -0.255 5.255 18 C -0.139 4.139 19 C 0.131 3.869 20 N -0.625 5.625 21 C -0.304 4.304 22 H 0.082 0.918 23 C -0.024 4.024 24 N -0.933 5.933 25 Si 1.061 2.939 26 H -0.294 1.294 27 H -0.281 1.281 28 H -0.295 1.295 29 C 0.108 3.892 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.406 0.594 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -5.435 -29.280 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.110 0.890 4 N -0.355 5.355 5 C 0.385 3.615 6 O -0.404 6.404 7 C -0.154 4.154 8 C -0.191 4.191 9 C -0.153 4.153 10 N -0.025 5.025 11 C 0.088 3.912 12 C -0.209 4.209 13 C -0.032 4.032 14 N -0.197 5.197 15 C -0.031 4.031 16 C -0.187 4.187 17 N -0.087 5.087 18 C -0.159 4.159 19 C 0.004 3.996 20 N -0.353 5.353 21 C -0.430 4.430 22 H 0.100 0.900 23 C -0.223 4.223 24 N -0.575 5.575 25 Si 0.892 3.108 26 H -0.222 1.222 27 H -0.208 1.208 28 H -0.223 1.223 29 C -0.018 4.018 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.241 0.759 34 H 0.190 0.810 35 H 0.205 0.795 36 H 0.164 0.836 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.173 0.827 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.468 -6.299 -29.145 30.151 hybrid contribution -1.761 1.126 0.312 2.114 sum -6.229 -5.173 -28.833 29.948 Atomic orbital electron populations 1.22123 0.94995 1.02106 1.02441 1.21097 0.94071 0.97501 0.82650 0.88979 1.45992 1.65842 1.14473 1.09158 1.16801 0.77608 0.85693 0.81364 1.90808 1.50544 1.14696 1.84377 1.22288 1.06159 0.90378 0.96545 1.21916 1.04665 1.01004 0.91514 1.23079 1.06922 0.85730 0.99584 1.42650 1.45898 1.07554 1.06430 1.17924 0.96850 0.82510 0.93947 1.21913 1.04002 1.00847 0.94111 1.22723 0.93672 0.87051 0.99728 1.67731 1.14724 1.33774 1.03464 1.22853 0.92067 0.96047 0.92089 1.22099 1.02285 0.92332 1.01946 1.73558 1.15604 1.17465 1.02120 1.23539 0.99155 1.00318 0.92882 1.22284 0.90364 0.97037 0.89915 1.46192 1.04035 1.83197 1.01849 1.20131 0.92120 1.47029 0.83736 0.90043 1.25754 0.94364 0.99234 1.02938 1.70899 1.37629 1.42801 1.06153 0.83792 0.75727 0.76741 0.74495 1.22197 1.20763 1.22253 1.22742 0.94643 0.98399 0.86008 0.92489 0.91086 0.92453 0.75900 0.81036 0.79478 0.83634 0.81462 0.81299 0.82721 0.88348 0.93467 0.94444 0.92870 0.93689 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.29 37.16 0.35 -1.62 16 2 C 0.15 2.17 2.47 -67.93 -0.17 2.00 16 3 H 0.09 1.48 7.32 -51.93 -0.38 1.10 16 4 N -0.70 -9.44 5.07 -54.79 -0.28 -9.71 16 5 C 0.60 8.63 7.79 -12.39 -0.10 8.54 16 6 O -0.53 -8.94 16.58 5.30 0.09 -8.85 16 7 C 0.01 0.12 7.13 -82.75 -0.59 -0.47 16 8 C -0.16 -1.62 10.80 -39.35 -0.42 -2.05 16 9 C -0.01 -0.12 10.82 -16.78 -0.18 -0.30 16 10 N -0.24 -2.34 3.51 -10.37 -0.04 -2.37 16 11 C 0.19 1.53 6.70 -83.36 -0.56 0.97 16 12 C -0.19 -1.04 9.50 -39.26 -0.37 -1.41 16 13 C 0.13 0.71 11.17 -17.60 -0.20 0.51 16 14 N -0.49 -3.81 10.36 -13.32 -0.14 -3.95 16 15 C 0.13 0.89 11.17 -17.59 -0.20 0.70 16 16 C -0.16 -1.31 9.67 -39.26 -0.38 -1.69 16 17 N -0.26 -2.98 10.94 33.43 0.37 -2.62 16 18 C -0.14 -2.31 3.67 -89.97 -0.33 -2.64 16 19 C 0.13 2.52 7.33 -8.50 -0.06 2.46 16 20 N -0.63 -15.50 3.62 -184.59 -0.67 -16.17 16 21 C -0.30 -8.86 11.03 -15.06 -0.17 -9.03 16 22 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 23 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 24 N -0.93 -29.79 13.70 55.49 0.76 -29.03 16 25 Si 1.06 27.32 25.50 -169.99 -4.34 22.98 16 26 H -0.29 -7.27 6.97 56.52 0.39 -6.88 16 27 H -0.28 -6.82 5.66 56.52 0.32 -6.50 16 28 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 29 C 0.11 2.29 5.18 -8.37 -0.04 2.25 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.41 4.89 8.32 -40.82 -0.34 4.55 16 34 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.19 0.64 7.04 -52.49 -0.37 0.27 16 36 H 0.15 0.39 6.78 -52.48 -0.36 0.03 16 37 H 0.17 0.43 8.06 -52.48 -0.42 0.00 16 38 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.16 1.23 7.74 -52.49 -0.41 0.82 16 40 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 44 H 0.05 0.97 6.81 -51.93 -0.35 0.62 16 45 H 0.05 1.10 6.22 -51.93 -0.32 0.78 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -36.90 377.62 -8.03 -44.94 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.96 Total: 1.68 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -3.52 Total: -2.59 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.01 Total: -63.85 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.34 Total: 22.98 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.90 -8.03 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970131729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.299 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds