Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47106 * 2 1 4 4 N 1.46498 * 109.47442 * 239.99918 * 2 1 3 5 5 C 1.34779 * 119.99683 * 85.00303 * 4 2 1 6 6 O 1.21571 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.47699 * 119.99921 * 180.02562 * 5 4 2 8 8 C 1.41562 * 126.43899 * 180.02562 * 7 5 4 9 9 C 1.35322 * 105.55681 * 179.97438 * 8 7 5 10 10 N 1.35909 * 107.11801 * 359.97438 * 9 8 7 11 11 C 1.39910 * 124.96551 * 180.02562 * 10 9 8 12 12 C 1.39326 * 120.86047 * 359.72330 * 11 10 9 13 13 C 1.38013 * 119.08152 * 179.70845 * 12 11 10 14 14 N 1.31923 * 120.83426 * 0.57583 * 13 12 11 15 15 C 1.31929 * 121.88711 * 359.71808 * 14 13 12 16 16 C 1.38018 * 120.83239 * 359.97438 * 15 14 13 17 17 N 1.28481 * 110.07099 * 359.76381 * 10 9 8 18 18 C 1.53004 * 109.47254 * 119.99727 * 2 1 3 19 19 C 1.53497 * 114.20756 * 300.00701 * 18 2 1 20 20 N 1.47070 * 87.98301 * 220.34168 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08006 * 120.00205 * 7.81892 * 21 20 19 23 23 C 1.38809 * 120.00281 * 187.82655 * 21 20 19 24 24 N 1.31616 * 120.00068 * 195.17204 * 23 21 20 25 25 Si 1.86802 * 119.99918 * 15.16359 * 23 21 20 26 26 H 1.48504 * 109.47042 * 270.00682 * 25 23 21 27 27 H 1.48499 * 109.47021 * 30.00157 * 25 23 21 28 28 H 1.48492 * 109.47106 * 150.00508 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47359 * 300.00317 * 1 2 3 32 32 H 1.08999 * 109.46774 * 60.00056 * 1 2 3 33 33 H 0.96997 * 120.00314 * 265.00182 * 4 2 1 34 34 H 1.07998 * 127.22261 * 359.95257 * 8 7 5 35 35 H 1.07998 * 126.44196 * 179.97438 * 9 8 7 36 36 H 1.08009 * 120.45498 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.58373 * 180.29331 * 13 12 11 38 38 H 1.07998 * 119.58608 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.46201 * 180.02562 * 16 15 14 40 40 H 1.09005 * 113.40728 * 73.19861 * 18 2 1 41 41 H 1.08996 * 113.46841 * 105.55693 * 19 18 2 42 42 H 1.08998 * 113.51535 * 335.12668 * 19 18 2 43 43 H 0.96995 * 120.00585 * 354.89801 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8576 1.1613 -2.4118 7 6 2.6390 -0.7145 -3.5632 8 6 2.8262 -0.1448 -4.8455 9 6 3.2871 -1.1499 -5.6255 10 7 3.3688 -2.2582 -4.8430 11 6 3.8049 -3.5151 -5.2761 12 6 4.1952 -3.7198 -6.5978 13 6 4.6249 -4.9732 -6.9839 14 7 4.6578 -5.9718 -6.1225 15 6 4.2908 -5.8194 -4.8645 16 6 3.8547 -4.5958 -4.3981 17 7 2.9922 -1.9817 -3.6462 18 6 2.0400 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5715 20 7 2.9389 -0.3445 3.0960 21 6 3.4924 -0.5603 4.3297 22 1 2.8556 -0.6862 5.1929 23 6 4.8721 -0.6173 4.4711 24 7 5.4012 -1.1127 5.5697 25 14 5.9780 0.0091 3.1020 26 1 6.2775 -1.1001 2.1611 27 1 5.2905 1.1048 2.3727 28 1 7.2449 0.5203 3.6839 29 6 3.4328 -0.2642 1.7130 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 2.6399 0.8775 -5.1396 35 1 3.5421 -1.0839 -6.6728 36 1 4.1659 -2.9077 -7.3093 37 1 4.9338 -5.1398 -8.0054 38 1 4.3330 -6.6625 -4.1908 39 1 3.5561 -4.4776 -3.3670 40 1 1.9118 -1.8029 1.2076 41 1 0.8094 -0.6493 3.0815 42 1 1.3544 0.9762 2.4855 43 1 4.8298 -1.3695 6.3102 44 1 3.6837 0.7493 1.3999 45 1 4.2228 -0.9820 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970131729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 126.641612 kcal Electronic energy + Delta-G solvation = -28441.692196 eV Core-core repulsion = 24462.564195 eV Total energy + Delta-G solvation = -3979.128001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.07864 -41.23349 -40.92372 -39.89724 -36.36388 -35.52263 -34.54658 -32.81192 -32.34547 -31.70394 -30.98143 -29.50640 -27.12482 -26.29340 -25.29422 -24.94751 -23.65944 -22.40434 -22.28282 -21.45572 -20.76758 -19.77587 -19.54483 -18.45124 -17.52782 -17.37492 -17.13181 -17.00485 -16.85900 -16.20311 -16.03347 -15.75006 -15.64235 -15.30088 -14.97161 -14.84647 -14.77020 -14.69456 -14.41788 -14.07856 -13.66401 -13.31725 -13.23171 -13.11905 -12.83988 -12.64264 -12.51294 -12.11963 -11.91640 -11.89256 -11.74460 -11.48205 -11.34228 -11.02213 -10.86201 -10.69834 -10.44279 -10.30913 -10.18125 -9.78877 -9.26326 -8.63880 -5.48185 -0.52136 0.01087 0.62296 1.11493 1.20348 1.35035 1.45962 1.60960 2.05379 2.26679 2.48543 2.72849 2.98874 3.04345 3.13416 3.43972 3.47312 3.57852 3.67705 3.82671 3.84666 4.01478 4.06245 4.18550 4.35527 4.42267 4.45317 4.47006 4.59167 4.61334 4.64873 4.65221 4.68598 4.77021 4.79468 4.85849 4.89670 5.01344 5.18984 5.21069 5.29070 5.38030 5.45486 5.50943 5.77065 5.93989 6.35437 6.68406 6.68968 6.87471 7.08629 7.31595 8.26862 8.87748 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002719 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.786208 B =10294.883899 C =11685.556505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 H 0.077 0.923 4 N -0.700 5.700 5 C 0.602 3.398 6 O -0.562 6.562 7 C -0.018 4.018 8 C -0.182 4.182 9 C 0.005 3.995 10 N -0.243 5.243 11 C 0.161 3.839 12 C -0.171 4.171 13 C 0.124 3.876 14 N -0.510 5.510 15 C 0.119 3.881 16 C -0.179 4.179 17 N -0.273 5.273 18 C -0.105 4.105 19 C 0.130 3.870 20 N -0.658 5.658 21 C -0.289 4.289 22 H 0.053 0.947 23 C -0.083 4.083 24 N -0.969 5.969 25 Si 1.099 2.901 26 H -0.279 1.279 27 H -0.261 1.261 28 H -0.301 1.301 29 C 0.099 3.901 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.181 0.819 35 H 0.236 0.764 36 H 0.182 0.818 37 H 0.201 0.799 38 H 0.184 0.816 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.248 0.752 44 H 0.047 0.953 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 -5.651 -33.513 34.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.055 3.945 3 H 0.095 0.905 4 N -0.351 5.351 5 C 0.387 3.613 6 O -0.439 6.439 7 C -0.180 4.180 8 C -0.209 4.209 9 C -0.133 4.133 10 N -0.025 5.025 11 C 0.063 3.937 12 C -0.193 4.193 13 C -0.033 4.033 14 N -0.219 5.219 15 C -0.037 4.037 16 C -0.200 4.200 17 N -0.107 5.107 18 C -0.124 4.124 19 C 0.004 3.996 20 N -0.386 5.386 21 C -0.417 4.417 22 H 0.071 0.929 23 C -0.275 4.275 24 N -0.614 5.614 25 Si 0.925 3.075 26 H -0.206 1.206 27 H -0.186 1.186 28 H -0.229 1.229 29 C -0.026 4.026 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.249 0.751 34 H 0.198 0.802 35 H 0.252 0.748 36 H 0.199 0.801 37 H 0.218 0.782 38 H 0.201 0.799 39 H 0.164 0.836 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.935 -6.535 -33.406 34.395 hybrid contribution -1.711 1.112 1.540 2.556 sum -6.646 -5.423 -31.865 33.000 Atomic orbital electron populations 1.22061 0.93034 1.03154 1.02708 1.20897 0.95427 0.96258 0.81939 0.90491 1.45916 1.65690 1.14721 1.08762 1.17050 0.76928 0.85371 0.81939 1.90779 1.52064 1.16015 1.85003 1.22121 1.08012 0.91128 0.96732 1.22158 1.05679 1.02151 0.90899 1.23767 1.04434 0.84081 1.01036 1.42862 1.45093 1.08489 1.06084 1.18278 0.98227 0.81984 0.95245 1.22290 1.01905 1.01793 0.93336 1.23334 0.92656 0.86606 1.00743 1.67771 1.15243 1.35025 1.03882 1.23081 0.91939 0.96255 0.92399 1.22143 1.03017 0.93020 1.01854 1.73486 1.16344 1.17195 1.03642 1.23229 0.95341 1.01044 0.92816 1.22501 0.88151 0.98271 0.90670 1.46304 1.06937 1.83765 1.01635 1.20014 0.91932 1.44771 0.84984 0.92873 1.26936 0.96326 0.99879 1.04383 1.70994 1.37688 1.45779 1.06974 0.83315 0.74127 0.77319 0.72748 1.20581 1.18574 1.22866 1.22931 0.97012 0.98431 0.84257 0.91059 0.90348 0.92674 0.75085 0.80156 0.74812 0.80113 0.78232 0.79913 0.83593 0.86957 0.92439 0.92893 0.94274 0.93524 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.29 71.98 0.67 -2.73 16 2 C 0.16 4.31 2.47 44.99 0.11 4.42 16 3 H 0.08 2.37 7.32 -2.39 -0.02 2.36 16 4 N -0.70 -17.92 5.07 -445.54 -2.26 -20.18 16 5 C 0.60 16.87 7.79 86.74 0.68 17.55 16 6 O -0.56 -18.75 16.58 -3.94 -0.07 -18.82 16 7 C -0.02 -0.44 7.13 42.47 0.30 -0.14 16 8 C -0.18 -3.26 10.80 22.42 0.24 -3.02 16 9 C 0.01 0.06 10.82 83.39 0.90 0.96 16 10 N -0.24 -4.13 3.51 -186.73 -0.66 -4.79 16 11 C 0.16 2.28 6.70 38.38 0.26 2.53 16 12 C -0.17 -1.26 9.50 22.48 0.21 -1.04 16 13 C 0.12 0.98 11.17 84.63 0.95 1.93 16 14 N -0.51 -6.93 10.36 -196.06 -2.03 -8.96 16 15 C 0.12 1.56 11.17 84.63 0.95 2.51 16 16 C -0.18 -2.69 9.67 22.48 0.22 -2.47 16 17 N -0.27 -6.09 10.94 -48.15 -0.53 -6.62 16 18 C -0.10 -3.28 3.67 -10.37 -0.04 -3.32 16 19 C 0.13 4.77 7.33 83.18 0.61 5.38 16 20 N -0.66 -32.26 3.62 -737.93 -2.67 -34.93 16 21 C -0.29 -17.16 11.03 84.03 0.93 -16.24 16 22 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 23 C -0.08 -5.08 5.50 84.86 0.47 -4.62 16 24 N -0.97 -63.84 13.70 21.65 0.30 -63.54 16 25 Si 1.10 55.55 25.50 68.60 1.75 57.30 16 26 H -0.28 -13.28 6.97 99.48 0.69 -12.59 16 27 H -0.26 -12.12 5.66 99.48 0.56 -11.55 16 28 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 29 C 0.10 4.06 5.18 83.26 0.43 4.49 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.65 7.48 -2.39 -0.02 1.63 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 9.44 8.32 -92.71 -0.77 8.67 16 34 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.24 0.29 7.04 -2.91 -0.02 0.27 16 36 H 0.18 -0.07 6.78 -2.91 -0.02 -0.09 16 37 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.15 2.34 7.74 -2.91 -0.02 2.32 16 40 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 43 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 44 H 0.05 1.94 6.81 -2.38 -0.02 1.92 16 45 H 0.04 1.82 6.22 -2.39 -0.01 1.80 16 Total: -1.00 -83.03 377.62 1.77 -81.25 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.06 Total: 13.08 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 7.88 Total: 6.20 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -7.85 Total: -139.01 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.07 Total: -18.82 kcal Atomic # 14 Polarization: 55.55 SS G_CDS: 1.75 Total: 57.30 kcal Total: -83.03 1.77 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970131729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.896 kcal (2) G-P(sol) polarization free energy of solvation -83.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds