Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47401 * 2 1 4 4 N 1.46502 * 109.47345 * 239.99755 * 2 1 3 5 5 C 1.34771 * 119.99999 * 84.99923 * 4 2 1 6 6 O 1.21575 * 120.00333 * 0.02562 * 5 4 2 7 7 C 1.47668 * 120.00089 * 180.02562 * 5 4 2 8 8 C 1.40237 * 120.49746 * 180.02562 * 7 5 4 9 9 C 1.38016 * 118.35710 * 179.72763 * 8 7 5 10 10 C 1.39159 * 119.25130 * 0.49639 * 9 8 7 11 11 N 1.39496 * 119.52333 * 179.77160 * 10 9 8 12 12 C 1.37232 * 126.49506 * 184.98214 * 11 10 9 13 13 C 1.34586 * 106.82374 * 180.14101 * 12 11 10 14 14 N 1.34172 * 108.23844 * 359.61938 * 13 12 11 15 15 C 1.30452 * 109.38428 * 0.23912 * 14 13 12 16 16 N 1.32425 * 120.94379 * 359.49076 * 10 9 8 17 17 C 1.31636 * 121.80512 * 0.25719 * 16 10 9 18 18 C 1.53003 * 109.47089 * 119.99891 * 2 1 3 19 19 C 1.53944 * 113.74298 * 281.82332 * 18 2 1 20 20 N 1.47803 * 86.03852 * 222.08362 * 19 18 2 21 21 C 1.36938 * 134.45628 * 204.64171 * 20 19 18 22 22 H 1.08006 * 120.00158 * 179.86572 * 21 20 19 23 23 C 1.38814 * 120.00166 * 359.86810 * 21 20 19 24 24 N 1.31613 * 119.99524 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47159 * 60.00290 * 25 23 21 27 27 H 1.48499 * 109.46574 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47299 * 300.00033 * 25 23 21 29 29 C 1.47576 * 91.05255 * 24.54844 * 20 19 18 30 30 H 1.08997 * 109.46763 * 60.07790 * 1 2 3 31 31 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47102 * 300.07246 * 1 2 3 33 33 H 0.96999 * 119.99770 * 265.00455 * 4 2 1 34 34 H 1.08003 * 120.81967 * 359.97438 * 8 7 5 35 35 H 1.07994 * 120.37279 * 180.26946 * 9 8 7 36 36 H 1.08000 * 126.58685 * 359.97438 * 12 11 10 37 37 H 1.08001 * 125.87969 * 179.88396 * 13 12 11 38 38 H 1.08005 * 125.73086 * 179.97438 * 15 14 13 39 39 H 1.08005 * 119.68060 * 179.97438 * 17 16 10 40 40 H 1.09004 * 112.94501 * 53.41273 * 18 2 1 41 41 H 1.09005 * 113.76444 * 336.35015 * 19 18 2 42 42 H 1.08997 * 113.77325 * 107.73959 * 19 18 2 43 43 H 0.97003 * 119.99515 * 180.02562 * 24 23 21 44 44 H 1.09007 * 113.77277 * 221.15371 * 29 20 19 45 45 H 1.09005 * 113.87444 * 89.76506 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1613 -2.4117 7 6 2.6388 -0.7147 -3.5629 8 6 2.7773 -0.0251 -4.7762 9 6 3.2462 -0.7178 -5.8740 10 6 3.5538 -2.0688 -5.7451 11 7 4.0236 -2.7755 -6.8522 12 6 4.2780 -4.1227 -6.9127 13 6 4.7162 -4.3808 -8.1588 14 7 4.7236 -3.2297 -8.8482 15 6 4.3112 -2.2611 -8.0779 16 7 3.4121 -2.6918 -4.5851 17 6 2.9731 -2.0685 -3.5120 18 6 2.0400 -0.7212 1.2493 19 6 1.9744 0.1329 2.5283 20 7 3.3097 -0.4178 2.8417 21 6 4.0192 -0.6143 3.9963 22 1 5.0065 -1.0504 3.9559 23 6 3.4696 -0.2530 5.2188 24 7 2.2667 0.2788 5.2679 25 14 4.4374 -0.5218 6.7938 26 1 5.7077 0.2447 6.7312 27 1 3.6351 -0.0554 7.9532 28 1 4.7387 -1.9675 6.9492 29 6 3.5701 -0.6730 1.4117 30 1 -0.3633 0.5126 -0.8907 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8893 33 1 2.2490 -1.6318 -1.1525 34 1 2.5270 1.0230 -4.8486 35 1 3.3695 -0.2178 -6.8233 36 1 4.1534 -4.8379 -6.1131 37 1 5.0073 -5.3486 -8.5396 38 1 4.2148 -1.2243 -8.3650 39 1 2.8703 -2.6103 -2.5834 40 1 1.6175 -1.7193 1.3660 41 1 1.9751 1.2066 2.3400 42 1 1.1953 -0.1775 3.2245 43 1 1.8828 0.5316 6.1222 44 1 4.0627 -1.6258 1.2179 45 1 4.0407 0.1623 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970239514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = 132.230820 kcal Electronic energy + Delta-G solvation = -28057.842195 eV Core-core repulsion = 24078.956560 eV Total energy + Delta-G solvation = -3978.885635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.83338 -40.95931 -39.53606 -38.07430 -35.04369 -34.74920 -33.24132 -32.31725 -31.37800 -30.19544 -29.51994 -27.53331 -25.54773 -24.78605 -24.47734 -23.97535 -22.24529 -21.42012 -21.33141 -20.55193 -19.48828 -19.28123 -17.82508 -17.22125 -16.77270 -16.26324 -15.92285 -15.76401 -15.20645 -15.00816 -14.80791 -14.39187 -14.32831 -14.21794 -13.98771 -13.95760 -13.73515 -13.55859 -13.26688 -13.14742 -12.38871 -12.15612 -11.68376 -11.46241 -11.30720 -11.21627 -10.91744 -10.76378 -10.64114 -10.60691 -10.59277 -10.42384 -10.13549 -9.88645 -9.78551 -9.48666 -9.35123 -9.05524 -8.92173 -8.82760 -6.92003 -5.80443 -3.12709 -0.18442 0.54493 1.57268 1.89288 2.59648 2.68225 2.96487 3.35758 3.37209 3.41458 3.42651 3.58106 3.93319 4.14859 4.19953 4.24959 4.41684 4.46515 4.65030 4.85905 4.96297 5.03749 5.08497 5.10163 5.29451 5.32748 5.43690 5.47908 5.56790 5.65105 5.72881 5.73766 5.90189 5.98514 6.17761 6.19345 6.28279 6.36543 6.45821 6.55830 6.57577 6.69666 7.09963 7.17288 7.30296 7.39278 7.48170 7.51574 7.94432 8.04965 9.01058 9.67366 10.55685 11.36728 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.001966 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.116513 B =14241.489593 C =15200.054691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.091 0.909 4 N -0.710 5.710 5 C 0.562 3.438 6 O -0.533 6.533 7 C -0.191 4.191 8 C 0.011 3.989 9 C -0.187 4.187 10 C 0.364 3.636 11 N -0.413 5.413 12 C -0.023 4.023 13 C -0.030 4.030 14 N -0.477 5.477 15 C 0.195 3.805 16 N -0.500 5.500 17 C 0.172 3.828 18 C -0.148 4.148 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.397 0.603 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.184 0.816 37 H 0.178 0.822 38 H 0.213 0.787 39 H 0.173 0.827 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.040 0.960 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -5.475 -24.691 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.360 5.360 5 C 0.347 3.653 6 O -0.411 6.411 7 C -0.197 4.197 8 C -0.015 4.015 9 C -0.209 4.209 10 C 0.136 3.864 11 N -0.096 5.096 12 C -0.152 4.152 13 C -0.174 4.174 14 N -0.193 5.193 15 C -0.087 4.087 16 N -0.211 5.211 17 C 0.012 3.988 18 C -0.168 4.168 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C -0.002 4.002 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.201 0.799 37 H 0.195 0.805 38 H 0.230 0.770 39 H 0.190 0.810 40 H 0.108 0.892 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.117 -5.424 -25.060 25.665 hybrid contribution 0.288 0.198 1.743 1.777 sum -0.829 -5.226 -23.318 23.910 Atomic orbital electron populations 1.22115 0.95155 1.01943 1.02458 1.21205 0.93968 0.97558 0.82644 0.89141 1.46085 1.66249 1.13989 1.09693 1.17817 0.78158 0.86548 0.82728 1.90805 1.50306 1.15185 1.84790 1.21162 1.06497 0.95793 0.96223 1.21642 0.89244 1.01096 0.89526 1.21550 1.05027 0.92666 1.01649 1.18361 0.93388 0.88515 0.86175 1.43160 1.48541 1.08454 1.09460 1.23019 1.06638 0.84291 1.01249 1.22448 1.05991 0.97803 0.91155 1.70345 1.18271 0.99205 1.31522 1.25420 1.02766 1.00862 0.79617 1.66998 1.16478 1.39487 0.98141 1.22851 0.89787 0.90631 0.95526 1.23893 0.97631 1.00859 0.94461 1.22229 0.89678 0.93878 0.89190 1.45966 1.16319 1.71880 0.99601 1.18969 0.98475 1.34990 0.82798 0.90360 1.24783 0.97070 1.01044 0.97517 1.69791 1.15351 1.47133 1.24565 0.86200 0.78893 0.77849 0.82817 1.21202 1.21519 1.21073 1.22541 0.92966 0.97694 0.86955 0.92758 0.92646 0.90853 0.76774 0.82168 0.83174 0.79857 0.80515 0.77014 0.81025 0.89193 0.95373 0.90622 0.93540 0.94136 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.44 37.16 0.35 -1.65 16 2 C 0.15 2.08 2.29 -67.93 -0.16 1.93 16 3 H 0.09 1.47 7.48 -51.93 -0.39 1.08 16 4 N -0.71 -7.90 4.90 -54.81 -0.27 -8.16 16 5 C 0.56 6.68 7.74 -12.41 -0.10 6.58 16 6 O -0.53 -8.18 16.08 5.30 0.09 -8.10 16 7 C -0.19 -1.75 5.89 -104.81 -0.62 -2.37 16 8 C 0.01 0.09 9.70 -38.91 -0.38 -0.29 16 9 C -0.19 -1.24 9.48 -39.32 -0.37 -1.61 16 10 C 0.36 3.12 7.49 -154.51 -1.16 1.97 16 11 N -0.41 -3.54 2.98 -63.80 -0.19 -3.73 16 12 C -0.02 -0.19 11.16 -16.43 -0.18 -0.38 16 13 C -0.03 -0.26 11.85 -17.82 -0.21 -0.47 16 14 N -0.48 -4.72 11.24 -14.45 -0.16 -4.88 16 15 C 0.19 1.51 11.89 -89.54 -1.06 0.45 16 16 N -0.50 -4.62 9.87 -11.99 -0.12 -4.74 16 17 C 0.17 1.41 10.71 -17.15 -0.18 1.22 16 18 C -0.15 -2.46 3.35 -89.69 -0.30 -2.76 16 19 C 0.18 3.91 6.98 -2.84 -0.02 3.89 16 20 N -0.61 -15.22 3.70 -177.72 -0.66 -15.88 16 21 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 22 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -26.85 11.39 55.49 0.63 -26.22 16 25 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 29 C 0.12 2.38 8.38 -2.97 -0.02 2.36 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.40 3.39 6.66 -40.82 -0.27 3.12 16 34 H 0.16 1.13 7.73 -52.48 -0.41 0.72 16 35 H 0.15 0.52 6.75 -52.49 -0.35 0.17 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.21 0.80 7.05 -52.48 -0.37 0.43 16 39 H 0.17 0.99 6.41 -52.48 -0.34 0.66 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 42 H 0.08 1.86 7.17 -51.93 -0.37 1.49 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -35.27 381.85 -10.46 -45.73 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.84 Total: 1.18 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -4.67 Total: 2.18 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.77 Total: -63.61 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.27 -10.46 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970239514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.959 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds